Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Wed Oct 9 11:26:16 2013 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions CC=clang CXX=clang++ FC=gfortran --download-mpich=1 Working directory: /Users/barrysmith/Src/PETSc Machine platform: ('Darwin', 'anlextwls002-169.wl.anl-external.org', '12.5.0', 'Darwin Kernel Version 12.5.0: Sun Sep 29 13:33:47 PDT 2013; root:xnu-2050.48.12~1/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.2 (default, Oct 11 2012, 20:14:37) [GCC 4.2.1 Compatible Apple Clang 4.0 (tags/Apple/clang-418.0.60)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/local/bin/gdb...not found Checking for program /opt/local/sbin/gdb...not found Checking for program /Users/barrysmith/Src/petsc/bin/gdb...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/gdb...not found Checking for program /Users/barrysmith/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/local/bin/dbx...not found Checking for program /opt/local/sbin/dbx...not found Checking for program /Users/barrysmith/Src/petsc/bin/dbx...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/dbx...not found Checking for program /Users/barrysmith/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /opt/X11/bin/dbx...not found Checking for program /Users/barrysmith/Src/petsc-dev/bin/dbx...not found Checking for program /Users/barrysmith/bin/dbx...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /opt/local/bin/dbx...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /opt/local/bin/dbx...not found Checking for program /Users/barrysmith/Src/pyjs/bin/dbx...not found Checking for program /Users/barrysmith/dbx...not found Checking for program /opt/local/bin/xdb...not found Checking for program /opt/local/sbin/xdb...not found Checking for program /Users/barrysmith/Src/petsc/bin/xdb...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/xdb...not found Checking for program /Users/barrysmith/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /opt/X11/bin/xdb...not found Checking for program /Users/barrysmith/Src/petsc-dev/bin/xdb...not found Checking for program /Users/barrysmith/bin/xdb...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /opt/local/bin/xdb...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /opt/local/bin/xdb...not found Checking for program /Users/barrysmith/Src/pyjs/bin/xdb...not found Checking for program /Users/barrysmith/xdb...not found Checking for program /opt/local/bin/dsymutil...not found Checking for program /opt/local/sbin/dsymutil...not found Checking for program /Users/barrysmith/Src/petsc/bin/dsymutil...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/dsymutil...not found Checking for program /Users/barrysmith/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/languages.py:28) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/languages.py:37) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:37) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMkdir from config.programs(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/local/bin/mkdir...not found Checking for program /opt/local/sbin/mkdir...not found Checking for program /Users/barrysmith/Src/petsc/bin/mkdir...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/mkdir...not found Checking for program /Users/barrysmith/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /opt/local/bin/autoreconf...found All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs sh: cd /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/autoconfdir&&/opt/local/bin/autoreconf Executing: cd /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/autoconfdir&&/opt/local/bin/autoreconf sh: ================================================================================ TEST configurePrograms from config.programs(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /opt/local/bin/sh...not found Checking for program /opt/local/sbin/sh...not found Checking for program /Users/barrysmith/Src/petsc/bin/sh...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/sh...not found Checking for program /Users/barrysmith/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/local/bin/sed...not found Checking for program /opt/local/sbin/sed...not found Checking for program /Users/barrysmith/Src/petsc/bin/sed...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/sed...not found Checking for program /Users/barrysmith/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" sh: /usr/bin/sed -i s/sed/sd/g "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/sed1" Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/sed1" sh: Rejected SEDINPLACE cmd: /usr/bin/sed -i sh: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/sed1" Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/sed1" sh: Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /opt/local/bin/mv...not found Checking for program /opt/local/sbin/mv...not found Checking for program /Users/barrysmith/Src/petsc/bin/mv...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/mv...not found Checking for program /Users/barrysmith/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/local/bin/cp...not found Checking for program /opt/local/sbin/cp...not found Checking for program /Users/barrysmith/Src/petsc/bin/cp...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/cp...not found Checking for program /Users/barrysmith/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/local/bin/grep...not found Checking for program /opt/local/sbin/grep...not found Checking for program /Users/barrysmith/Src/petsc/bin/grep...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/grep...not found Checking for program /Users/barrysmith/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /opt/local/bin/rm...not found Checking for program /opt/local/sbin/rm...not found Checking for program /Users/barrysmith/Src/petsc/bin/rm...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/rm...not found Checking for program /Users/barrysmith/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/local/bin/diff...not found Checking for program /opt/local/sbin/diff...not found Checking for program /Users/barrysmith/Src/petsc/bin/diff...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/diff...not found Checking for program /Users/barrysmith/bin/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/diff1" "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/diff2" Executing: "/usr/bin/diff" -w "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/diff1" "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/barrysmith/ps...not found Checking for program /opt/local/bin/gzip...not found Checking for program /opt/local/sbin/gzip...not found Checking for program /Users/barrysmith/Src/petsc/bin/gzip...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/gzip...not found Checking for program /Users/barrysmith/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureGit from config.sourceControl(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /opt/local/bin/git...not found Checking for program /opt/local/sbin/git...not found Checking for program /Users/barrysmith/Src/petsc/bin/git...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/git...not found Checking for program /Users/barrysmith/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" sh: git --version Executing: git --version sh: git version 1.8.3.4 (Apple Git-47) ================================================================================ TEST configureMercurial from config.sourceControl(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /opt/local/bin/hg...not found Checking for program /opt/local/sbin/hg...not found Checking for program /Users/barrysmith/Src/petsc/bin/hg...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/hg...not found Checking for program /Users/barrysmith/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /usr/local/bin/hg...found Defined make macro "HG" to "hg" sh: hg version -q Executing: hg version -q sh: Mercurial Distributed SCM (version 2.2.3+20120707) ================================================================================ TEST configureCVS from config.sourceControl(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /opt/local/bin/cvs...not found Checking for program /opt/local/sbin/cvs...not found Checking for program /Users/barrysmith/Src/petsc/bin/cvs...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/cvs...not found Checking for program /Users/barrysmith/bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" sh: cvs --version Executing: cvs --version sh: Concurrent Versions System (CVS) 1.12.13 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /opt/local/bin/svn...not found Checking for program /opt/local/sbin/svn...not found Checking for program /Users/barrysmith/Src/petsc/bin/svn...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/svn...not found Checking for program /Users/barrysmith/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" sh: svn --version -q Executing: svn --version -q sh: 1.7.10 ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/Users/barrysmith/Src/PETSc" Defined "DIR" to ""/Users/barrysmith/Src/PETSc"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/petscdir.py:77) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:77) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/petscdir.py:84) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:84) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""76ef0031c4ffa7d564e9b92e452c4bfeaaf5f487"" Defined "VERSION_DATE_GIT" to ""2013-10-09 08:02:25 -0500"" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST printEnvVariables from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1503) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1503) **** printenv **** VERSIONER_PYTHON_PREFER_32_BIT=no MATLABPATH=/pathlib/examples/Matlab/m-files:/pathlib/examples/Matlab:/pathlib_petsc:/Users/barrysmith/Src/petsc/bin/matlab:/Users/barrysmith/Src/petsc/bin/matlab/classes: TERM_PROGRAM_VERSION=309 LOGNAME=barrysmith USER=barrysmith PATH=/opt/local/bin:/opt/local/sbin:/Users/barrysmith/Src/petsc/bin:/Developer/NVIDIA/CUDA-5.5/bin/:/Users/barrysmith/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/Users/barrysmith/Src/petsc-dev/bin:/Users/barrysmith/bin:/usr/local/texlive/2012/bin/x86_64-darwin/:/usr/X11R6/bin:/opt/local/bin:/usr/local/texlive/2012/bin/x86_64-darwin:/bin:/usr/X11R6/bin:/opt/local/bin:/Users/barrysmith/Src/pyjs/bin HOME=/Users/barrysmith DISPLAY=/tmp/launch-huSisx/org.macosforge.xquartz:0 TERM_PROGRAM=Apple_Terminal LANG=en_US.UTF-8 TERM=xterm-256color SHELL=/bin/bash VERSIONER_PYTHON_VERSION=2.7 SHLVL=1 PWD=/Users/barrysmith/Src/petsc PETSC_DIR=/Users/barrysmith/Src/PETSc _=./configure PETSC_OPTIONS=-malloc_test TERM_SESSION_ID=AB9C124C-28A7-4D14-A42B-BDF1A224FAD2 SSH_AUTH_SOCK=/tmp/launch-vIUrYZ/Listeners DATAFILESPATH=/Users/barrysmith/Datafiles Apple_PubSub_Socket_Render=/tmp/launch-6h9F9z/Render TMPDIR=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/ OLDPWD=/Users/barrysmith CLICOLOR= __CF_USER_TEXT_ENCODING=0x1F7:0:0 Apple_Ubiquity_Message=/tmp/launch-peaBZ4/Apple_Ubiquity_Message PETSC_ARCH=arch-clang COMMAND_MODE=unix2003 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1510) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1510) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1475) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1475) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1494) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1494) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:399) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:399) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:409) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:409) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:525) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:525) Locate a functional C compiler Checking for program /opt/local/bin/clang...not found Checking for program /opt/local/sbin/clang...not found Checking for program /Users/barrysmith/Src/petsc/bin/clang...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/clang...not found Checking for program /Users/barrysmith/bin/clang...not found Checking for program /usr/bin/clang...found Defined make macro "CC" to "clang" Pushing language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:560) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:560) Locate a functional C preprocessor Checking for program /opt/local/bin/clang...not found Checking for program /opt/local/sbin/clang...not found Checking for program /Users/barrysmith/Src/petsc/bin/clang...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/clang...not found Checking for program /Users/barrysmith/bin/clang...not found Checking for program /usr/bin/clang...found Defined make macro "CPP" to "clang -E" Pushing language C sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 407 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 246 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 255 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 36 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; typedef __darwin_wchar_t wchar_t; typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 145 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) __attribute__((availability(macosx,introduced=10.6))); void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ); size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 78 "/usr/include/i386/types.h" 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 256 "/usr/include/stdlib.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) __attribute__((availability(macosx,introduced=10.7))); void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) __attribute__((availability(macosx,introduced=10.7))); int atexit_b(void (^)(void)) __attribute__((availability(macosx,introduced=10.6))); void *bsearch_b(const void *, const void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((availability(macosx,introduced=10.0,deprecated=10.5))); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int heapsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:594) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:594) Locate a functional CUDA compiler Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /Users/barrysmith/Src/petsc/bin/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA sh: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu Executing: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu sh: Possible ERROR while running compiler: ret = 256 error message = {clang: error: unsupported option '-dumpspecs' clang: error: no input files } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /Users/barrysmith/Src/petsc/bin/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA sh: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu Executing: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu sh: Possible ERROR while running compiler: ret = 256 error message = {clang: error: unsupported option '-dumpspecs' clang: error: no input files } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:632) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:632) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional Cxx compiler Checking for program /opt/local/bin/clang++...not found Checking for program /opt/local/sbin/clang++...not found Checking for program /Users/barrysmith/Src/petsc/bin/clang++...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/clang++...not found Checking for program /Users/barrysmith/bin/clang++...not found Checking for program /usr/bin/clang++...found Defined make macro "CXX" to "clang++" Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:773) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:773) Locate a functional Cxx preprocessor Checking for program /opt/local/bin/clang++...not found Checking for program /opt/local/sbin/clang++...not found Checking for program /Users/barrysmith/Src/petsc/bin/clang++...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/clang++...not found Checking for program /Users/barrysmith/bin/clang++...not found Checking for program /usr/bin/clang++...found Defined make macro "CXXCPP" to "clang++ -E" Pushing language Cxx sh: clang++ -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" # 1 "" 1 # 1 "" 3 # 167 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.2.1/cstdlib" 1 3 # 48 "/usr/include/c++/4.2.1/cstdlib" 3 # 48 "/usr/include/c++/4.2.1/cstdlib" 3 # 1 "/usr/include/c++/4.2.1/bits/c++config.h" 1 3 # 41 "/usr/include/c++/4.2.1/bits/c++config.h" 3 # 1 "/usr/include/c++/4.2.1/bits/os_defines.h" 1 3 # 61 "/usr/include/c++/4.2.1/bits/os_defines.h" 3 # 1 "/usr/include/unistd.h" 1 3 4 # 71 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 72 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 138 "/usr/include/sys/unistd.h" 3 4 struct accessx_descriptor { unsigned int ad_name_offset; int ad_flags; int ad_pad[2]; }; # 73 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 74 "/usr/include/unistd.h" 2 3 4 typedef __darwin_gid_t gid_t; typedef __darwin_intptr_t intptr_t; typedef __darwin_off_t off_t; typedef __darwin_pid_t pid_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_uid_t uid_t; typedef __darwin_useconds_t useconds_t; # 458 "/usr/include/unistd.h" 3 4 extern "C" { void _exit(int) __attribute__((noreturn)); int access(const char *, int); unsigned int alarm(unsigned int); int chdir(const char *); int chown(const char *, uid_t, gid_t); int close(int) __asm("_" "close" ); int dup(int); int dup2(int, int); int execl(const char *, const char *, ...); int execle(const char *, const char *, ...); int execlp(const char *, const char *, ...); int execv(const char *, char * const *); int execve(const char *, char * const *, char * const *); int execvp(const char *, char * const *); pid_t fork(void); long fpathconf(int, int); char *getcwd(char *, size_t); gid_t getegid(void); uid_t geteuid(void); gid_t getgid(void); int getgroups(int, gid_t []); char *getlogin(void); pid_t getpgrp(void); pid_t getpid(void); pid_t getppid(void); uid_t getuid(void); int isatty(int); int link(const char *, const char *); off_t lseek(int, off_t, int); long pathconf(const char *, int); int pause(void) __asm("_" "pause" ); int pipe(int [2]); ssize_t read(int, void *, size_t) __asm("_" "read" ); int rmdir(const char *); int setgid(gid_t); int setpgid(pid_t, pid_t); pid_t setsid(void); int setuid(uid_t); unsigned int sleep(unsigned int) __asm("_" "sleep" ); long sysconf(int); pid_t tcgetpgrp(int); int tcsetpgrp(int, pid_t); char *ttyname(int); int ttyname_r(int, char *, size_t) __asm("_" "ttyname_r" ); int unlink(const char *); ssize_t write(int, const void *, size_t) __asm("_" "write" ); } # 535 "/usr/include/unistd.h" 3 4 extern "C" { size_t confstr(int, char *, size_t) __asm("_" "confstr" ); int getopt(int, char * const [], const char *) __asm("_" "getopt" ); extern char *optarg; extern int optind, opterr, optopt; } # 560 "/usr/include/unistd.h" 3 4 extern "C" { void *brk(const void *); int chroot(const char *) ; char *crypt(const char *, const char *); char *ctermid(char *); void encrypt(char *, int) __asm("_" "encrypt" ); int fchdir(int); long gethostid(void); pid_t getpgid(pid_t); pid_t getsid(pid_t); int getdtablesize(void) ; int getpagesize(void) __attribute__((const)) ; char *getpass(const char *) ; char *getwd(char *) ; int lchown(const char *, uid_t, gid_t) __asm("_" "lchown" ); int lockf(int, int, off_t) __asm("_" "lockf" ); int nice(int) __asm("_" "nice" ); ssize_t pread(int, void *, size_t, off_t) __asm("_" "pread" ); ssize_t pwrite(int, const void *, size_t, off_t) __asm("_" "pwrite" ); void *sbrk(int); pid_t setpgrp(void) __asm("_" "setpgrp" ); int setregid(gid_t, gid_t) __asm("_" "setregid" ); int setreuid(uid_t, uid_t) __asm("_" "setreuid" ); void swab(const void * , void * , ssize_t); void sync(void); int truncate(const char *, off_t); useconds_t ualarm(useconds_t, useconds_t); int usleep(useconds_t) __asm("_" "usleep" ); pid_t vfork(void); int fsync(int) __asm("_" "fsync" ); int ftruncate(int, off_t); int getlogin_r(char *, size_t); } # 647 "/usr/include/unistd.h" 3 4 extern "C" { int fchown(int, uid_t, gid_t); int gethostname(char *, size_t); ssize_t readlink(const char * , char * , size_t); int setegid(gid_t); int seteuid(uid_t); int symlink(const char *, const char *); } # 1 "/usr/include/sys/select.h" 1 3 4 # 66 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/sys/select.h" 2 3 4 # 78 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 183 "/usr/include/sys/_structs.h" 3 4 extern "C" { typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; } static inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/select.h" 2 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; typedef __darwin_sigset_t sigset_t; # 134 "/usr/include/sys/select.h" 3 4 extern "C" { int pselect(int, fd_set * , fd_set * , fd_set * , const struct timespec * , const sigset_t * ) __asm("_" "pselect" "$1050") ; # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * , fd_set * , fd_set * , struct timeval * ) __asm("_" "select" "$1050") ; # 153 "/usr/include/sys/select.h" 2 3 4 } # 663 "/usr/include/unistd.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; typedef __darwin_uuid_t uuid_t; extern "C" { void _Exit(int) __attribute__((noreturn)); int accessx_np(const struct accessx_descriptor *, size_t, int *, uid_t); int acct(const char *); int add_profil(char *, size_t, unsigned long, unsigned int); void endusershell(void); int execvP(const char *, const char *, char * const *); char *fflagstostr(unsigned long); int getdomainname(char *, int); int getgrouplist(const char *, int, int *, int *); int gethostuuid(uuid_t, const struct timespec *) __attribute__((availability(macosx,introduced=10.5))); mode_t getmode(const void *, mode_t); int getpeereid(int, uid_t *, gid_t *); int getsgroups_np(int *, uuid_t); char *getusershell(void); int getwgroups_np(int *, uuid_t); int initgroups(const char *, int); int iruserok(unsigned long, int, const char *, const char *); int iruserok_sa(const void *, int, int, const char *, const char *); int issetugid(void); char *mkdtemp(char *); int mknod(const char *, mode_t, dev_t); int mkpath_np(const char *path, mode_t omode) __attribute__((availability(macosx,introduced=10.8))); int mkstemp(char *); int mkstemps(char *, int); char *mktemp(char *); int nfssvc(int, void *); int profil(char *, size_t, unsigned long, unsigned int); int pthread_setugid_np(uid_t, gid_t); int pthread_getugid_np( uid_t *, gid_t *); int rcmd(char **, int, const char *, const char *, const char *, int *); int rcmd_af(char **, int, const char *, const char *, const char *, int *, int); int reboot(int); int revoke(const char *); int rresvport(int *); int rresvport_af(int *, int); int ruserok(const char *, int, const char *, const char *); int setdomainname(const char *, int); int setgroups(int, const gid_t *); void sethostid(long); int sethostname(const char *, int); void setkey(const char *) __asm("_" "setkey" ); int setlogin(const char *); void *setmode(const char *) __asm("_" "setmode" ); int setrgid(gid_t); int setruid(uid_t); int setsgroups_np(int, const uuid_t); void setusershell(void); int setwgroups_np(int, const uuid_t); int strtofflags(char **, unsigned long *, unsigned long *); int swapon(const char *); int syscall(int, ...); int ttyslot(void); int undelete(const char *); int unwhiteout(const char *); void *valloc(size_t); extern char *suboptarg; int getsubopt(char **, char * const *, char **); int fgetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int fsetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int getattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "getattrlist" ); int setattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "setattrlist" ); int exchangedata(const char*,const char*,unsigned int); int getdirentriesattr(int,void*,void*,size_t,unsigned int*,unsigned int*,unsigned int*,unsigned int); # 763 "/usr/include/unistd.h" 3 4 struct fssearchblock; struct searchstate; int searchfs(const char *, struct fssearchblock *, unsigned long *, unsigned int, unsigned int, struct searchstate *); int fsctl(const char *,unsigned long,void*,unsigned int); int ffsctl(int,unsigned long,void*,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int fsync_volume_np(int, int) __attribute__((availability(macosx,introduced=10.8))); int sync_volume_np(const char *, int) __attribute__((availability(macosx,introduced=10.8))); extern int optreset; } # 62 "/usr/include/c++/4.2.1/bits/os_defines.h" 2 3 extern "C" { # 92 "/usr/include/c++/4.2.1/bits/os_defines.h" 3 extern void __dtrace_probe$cxa_runtime$cxa_exception_rethrow$v1(void); extern int __dtrace_isenabled$cxa_runtime$cxa_exception_rethrow$v1(void); extern void __dtrace_probe$cxa_runtime$cxa_exception_throw$v1$766f6964202a(void *); extern int __dtrace_isenabled$cxa_runtime$cxa_exception_throw$v1(void); } # 42 "/usr/include/c++/4.2.1/bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.2.1/bits/cpu_defines.h" 1 3 # 45 "/usr/include/c++/4.2.1/bits/c++config.h" 2 3 # 153 "/usr/include/c++/4.2.1/bits/c++config.h" 3 namespace std { # 165 "/usr/include/c++/4.2.1/bits/c++config.h" 3 } # 50 "/usr/include/c++/4.2.1/cstdlib" 2 3 # 1 "/usr/include/c++/4.2.1/cstddef" 1 3 # 48 "/usr/include/c++/4.2.1/cstddef" 3 # 48 "/usr/include/c++/4.2.1/cstddef" 3 # 1 "/usr/bin/../lib/clang/5.0/include/stddef.h" 1 3 4 # 34 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 51 "/usr/include/c++/4.2.1/cstddef" 2 3 namespace std { using ::ptrdiff_t; using ::size_t; } # 51 "/usr/include/c++/4.2.1/cstdlib" 2 3 # 71 "/usr/include/c++/4.2.1/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 65 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 95 "/usr/include/sys/wait.h" 3 4 typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 175 "/usr/include/sys/signal.h" 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 extern "C" { void (*signal(int, void (*)(int)))(int); } # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 extern "C" { int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); } # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 254 "/usr/include/sys/wait.h" 3 4 extern "C" { pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); } # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 35 "/usr/include/alloca.h" 3 4 extern "C" { void *alloca(size_t); } # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; # 97 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 144 "/usr/include/stdlib.h" 3 4 extern "C" { void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:882) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:882) Locate a functional Fortran compiler Checking for program /opt/local/bin/gfortran...not found Checking for program /opt/local/sbin/gfortran...not found Checking for program /Users/barrysmith/Src/petsc/bin/gfortran...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/gfortran...not found Checking for program /Users/barrysmith/bin/gfortran...not found Checking for program /usr/bin/gfortran...not found Checking for program /bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...found Defined make macro "FC" to "gfortran" Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:901) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:901) Make sure fortran comment "!" works Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:964) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:964) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C sh: clang --help Executing: clang --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying C compiler flag -fPIC sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx sh: clang++ --help Executing: clang++ --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying Cxx compiler flag -fPIC sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:997) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:997) ================================================================================ TEST checkArchiver from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1096) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1096) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: ar -V Executing: ar -V sh: sh: ar -V Executing: ar -V sh: Defined make macro "FAST_AR_FLAGS" to "Scq" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /opt/local/bin/ar...not found Checking for program /opt/local/sbin/ar...not found Checking for program /Users/barrysmith/Src/petsc/bin/ar...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/ar...not found Checking for program /Users/barrysmith/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/local/bin/ranlib...not found Checking for program /opt/local/sbin/ranlib...not found Checking for program /Users/barrysmith/Src/petsc/bin/ranlib...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/ranlib...not found Checking for program /Users/barrysmith/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conf1.o Executing: /usr/bin/ar cr /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conf1.o sh: sh: /usr/bin/ranlib -c /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a Executing: /usr/bin/ranlib -c /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a sh: sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconf1 Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1211) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1211) Check that the linker can produce shared libraries sh: uname -s Executing: uname -s sh: Darwin Checking shared linker clang using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /opt/local/bin/clang...not found Checking for program /opt/local/sbin/clang...not found Checking for program /Users/barrysmith/Src/petsc/bin/clang...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/clang...not found Checking for program /Users/barrysmith/bin/clang...not found Checking for program /usr/bin/clang...found Defined make macro "LD_SHARED" to "clang" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -dynamiclib -single_module sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -undefined dynamic_lookup sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -multiply_defined suppress sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:7:8: warning: if statement has empty body [-Wempty-body] if(ret);; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:7:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconftest Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconftest sh: Using shared linker clang with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib sh: uname -s Executing: uname -s sh: Darwin ================================================================================ TEST checkLinkerMac from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1269) TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1269) Tests some Apple Mac specific linker flags Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-multiply_defined,suppress sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-multiply_defined -Wl,suppress sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-commons,use_dylibs sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-search_paths_first Popping language C Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-multiply_defined,suppress sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-commons,use_dylibs sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-search_paths_first Popping language Cxx Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-multiply_defined,suppress sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-multiply_defined -Wl,suppress sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-commons,use_dylibs sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-search_paths_first Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1289) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1289) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: uname -s Executing: uname -s sh: Darwin sh: clang -V Executing: clang -V sh: Popping language C Pushing language Cxx sh: uname -s Executing: uname -s sh: Darwin sh: clang -V Executing: clang -V sh: Popping language Cxx Pushing language FC sh: uname -s Executing: uname -s sh: Darwin sh: clang -V Executing: clang -V sh: Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1324) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1324) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1373) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1373) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 37 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 38 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stdbool.h" 1 3 4 # 41 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/AvailabilityMacros.h" 1 3 4 # 42 "/usr/include/dlfcn.h" 2 3 4 typedef struct dl_info { const char *dli_fname; void *dli_fbase; const char *dli_sname; void *dli_saddr; } Dl_info; extern int dladdr(const void *, Dl_info *); extern int dlclose(void * __handle); extern char * dlerror(void); extern void * dlopen(const char * __path, int __mode); extern void * dlsym(void * __handle, const char * __symbol); extern _Bool dlopen_preflight(const char* __path) ; # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for function dlopen in library ['dl'] [] Pushing language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlsym in library ['dl'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlsym(); int main() { dlsym() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlclose in library ['dl'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlclose(); int main() { dlclose() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Darwin Checking dynamic linker clang using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /opt/local/bin/clang...not found Checking for program /opt/local/sbin/clang...not found Checking for program /Users/barrysmith/Src/petsc/bin/clang...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/clang...not found Checking for program /Users/barrysmith/bin/clang...not found Checking for program /usr/bin/clang...found Defined make macro "DYNAMICLINKER" to "clang" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -dynamiclib -single_module sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -undefined dynamic_lookup sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -multiply_defined suppress sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:11:3: warning: implicitly declaring library function 'printf' with type 'int (const char *, ...)' printf("Could not load symbol\n"); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:11:3: note: please include the header or explicitly provide a declaration for 'printf' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Using dynamic linker clang with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib ================================================================================ TEST output from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1419) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1419) Output module data as defines and substitutions Substituting "CC" with "clang" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "clang -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "clang++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "clang++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C sh: clang --version Executing: clang --version sh: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix getCompilerVersion: clang Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) sh: clang --help Executing: clang --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying C compiler flag -Wall sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas sh: clang --help Executing: clang --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying C compiler flag -g3 sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Trying C compiler flag -fno-inline sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-inline Trying C compiler flag -O0 sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O0 Popping language C Pushing language Cxx sh: clang++ --version Executing: clang++ --version sh: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix getCompilerVersion: clang++ Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) sh: clang++ --help Executing: clang++ --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying Cxx compiler flag -Wall sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas sh: clang++ --help Executing: clang++ --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying Cxx compiler flag -g sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.8.1 20130404 (prerelease) Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: gfortran GNU Fortran (GCC) 4.8.1 20130404 (prerelease) sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.8.1 20130404 (prerelease) Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.8.1 20130404 (prerelease) Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Trying FC compiler flag -Wall sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Trying FC compiler flag -Wno-unused-dummy-argument sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -g sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/arch.py:32) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:32) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-clang"" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/sharedLibraries.py:51) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:51) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/sharedLibraries.py:90) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:90) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(config/PETSc/utilities/bmakeDir.py:26) Makes $PETSC_ARCH and subdirectories if it does not exist Changed persistence directory to arch-clang/conf sh: clang --help Executing: clang --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type ================================================================================ TEST checkRestrict from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c:5:18: warning: unused variable 'x' [-Wunused-variable] float * restrict x;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } compilers: Set C restrict keyword to restrict Defined "C_RESTRICT" to "restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c:6:5: warning: unused variable 'i' [-Wunused-variable] int i = foo(1);; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_LAZY" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_NOW" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_LOCAL" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Possible ERROR while running linker: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a output: error message = {Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg Apple compilers: Unknown arg Apple compilers: Checking arg LLVM compilers: Unknown arg LLVM compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.0 compilers: Unknown arg 5.0 compilers: Checking arg (clang-500.2.75) compilers: Unknown arg (clang-500.2.75) compilers: Checking arg (based compilers: Unknown arg (based compilers: Checking arg on compilers: Unknown arg on compilers: Checking arg LLVM compilers: Unknown arg LLVM compilers: Checking arg 3.3svn) compilers: Unknown arg 3.3svn) compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin12.5.0 compilers: Unknown arg x86_64-apple-darwin12.5.0 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg "/usr/bin/ld" compilers: Unknown arg /usr/bin/ld compilers: Checking arg -demangle compilers: Unknown arg -demangle compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.0 compilers: Unknown arg 10.8.0 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lSystem compilers: Found library : -lSystem compilers: Checking arg /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a compilers: Found full library spec: /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a compilers: Libraries needed to link C code with another linker: ['-ldl', '-lSystem', '/usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Popping language FC sh: clang++ --help Executing: clang++ --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type ================================================================================ TEST checkRestrict from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc:5:17: error: expected ';' at end of declaration float * restrict x;; ^ ; 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc:5:23: warning: unused variable 'x' [-Wunused-variable] float * __restrict__ x;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc:6:5: warning: unused variable 'i' [-Wunused-variable] int i = foo(1);; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -lclang_rt.osx -ldl -lstdc++ -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a output: error message = {Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -lclang_rt.osx -ldl -lstdc++ -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a } Pushing language CXX Popping language CXX in clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg Apple compilers: Unknown arg Apple compilers: Checking arg LLVM compilers: Unknown arg LLVM compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.0 compilers: Unknown arg 5.0 compilers: Checking arg (clang-500.2.75) compilers: Unknown arg (clang-500.2.75) compilers: Checking arg (based compilers: Unknown arg (based compilers: Checking arg on compilers: Unknown arg on compilers: Checking arg LLVM compilers: Unknown arg LLVM compilers: Checking arg 3.3svn) compilers: Unknown arg 3.3svn) compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin12.5.0 compilers: Unknown arg x86_64-apple-darwin12.5.0 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg "/usr/bin/ld" compilers: Unknown arg /usr/bin/ld compilers: Checking arg -demangle compilers: Unknown arg -demangle compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.0 compilers: Unknown arg 10.8.0 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Found library directory: -L/usr/lib/clang/5.0/lib/darwin compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lSystem compilers: Found library: -lSystem Library already in C list so skipping in C++ compilers: Checking arg -lclang_rt.osx compilers: Found library: -lclang_rt.osx compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lSystem compilers: Checking arg /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a compilers: Found full library spec: /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a compilers: Libraries needed to link Cxx code with another linker: ['-L/usr/lib/clang/5.0/lib/darwin', '-lclang_rt.osx', '-lstdc++', '/usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status } Pushing language FC Popping language FC in gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: program main call d1_chk() end Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -DTesting /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -DTesting /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: gfortran -V Executing: gfortran -V sh: sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Driving: gfortran -mmacosx-version-min=10.8.5 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/lto-wrapper Target: x86_64-apple-darwin12.3.0 Configured with: ../gcc-4.8-20130404/configure --enable-languages=fortran,c++ Thread model: posix gcc version 4.8.1 20130404 (prerelease) (GCC) Reading specs from /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/ LIBRARY_PATH=/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-shared-libgcc' '-mtune=core2' /usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lSystem -lclang_rt.osx -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v -idsym collect2 version 4.8.1 20130404 (prerelease) /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lSystem -lclang_rt.osx -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-224.1 configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 armv6m armv7m armv7em Library search paths: /usr/lib/clang/5.0/lib/darwin /usr/lib/clang/5.0/lib/darwin /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 /usr/local/lib /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ output: error message = {Driving: gfortran -mmacosx-version-min=10.8.5 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/lto-wrapper Target: x86_64-apple-darwin12.3.0 Configured with: ../gcc-4.8-20130404/configure --enable-languages=fortran,c++ Thread model: posix gcc version 4.8.1 20130404 (prerelease) (GCC) Reading specs from /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/ LIBRARY_PATH=/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-shared-libgcc' '-mtune=core2' /usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lSystem -lclang_rt.osx -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v -idsym collect2 version 4.8.1 20130404 (prerelease) /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lSystem -lclang_rt.osx -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-224.1 configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 armv6m armv7m armv7em Library search paths: /usr/lib/clang/5.0/lib/darwin /usr/lib/clang/5.0/lib/darwin /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 /usr/local/lib /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ } Pushing language FC Popping language FC in gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: program main end Popping language FC compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -mmacosx-version-min=10.8.5 compilers: Unknown arg -mmacosx-version-min=10.8.5 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -lSystem compilers: Found library: -lSystem Library already in C list so skipping in Fortran compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Found library directory: -L/usr/lib/clang/5.0/lib/darwin compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Already in lflags so skipping: -L/usr/lib/clang/5.0/lib/darwin compilers: Checking arg -lclang_rt.osx compilers: Found library: -lclang_rt.osx Library already in Cxx list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin12.3.0 compilers: Unknown arg x86_64-apple-darwin12.3.0 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../gcc-4.8-20130404/configure compilers: Unknown arg ../gcc-4.8-20130404/configure compilers: Checking arg --enable-languages=fortran,c++ compilers: Unknown arg --enable-languages=fortran,c++ compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.1 compilers: Unknown arg 4.8.1 compilers: Checking arg 20130404 compilers: Unknown arg 20130404 compilers: Checking arg (prerelease) compilers: Unknown arg (prerelease) compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../libgfortran.spec compilers: Unknown arg /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/ compilers: Skipping arg COMPILER_PATH=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/ compilers: Checking arg LIBRARY_PATH=/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/collect2 compilers: Unknown arg /usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.5 compilers: Unknown arg 10.8.5 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Already in lflags so skipping: -L/usr/lib/clang/5.0/lib/darwin compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Already in lflags so skipping: -L/usr/lib/clang/5.0/lib/darwin compilers: Checking arg -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 compilers: Found library directory: -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 compilers: Checking arg -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. compilers: Found library directory: -L/usr/local/lib compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lclang_rt.osx compilers: Already in lflags: -lclang_rt.osx compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found library: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -idsym compilers: Unknown arg -idsym compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.1 compilers: Unknown arg 4.8.1 compilers: Checking arg 20130404 compilers: Unknown arg 20130404 compilers: Checking arg (prerelease) compilers: Unknown arg (prerelease) compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.5 compilers: Unknown arg 10.8.5 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Already in lflags so skipping: -L/usr/lib/clang/5.0/lib/darwin compilers: Checking arg -L/usr/bin/../lib/clang/5.0/lib/darwin compilers: Already in lflags so skipping: -L/usr/lib/clang/5.0/lib/darwin compilers: Checking arg -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 compilers: Already in lflags so skipping: -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 compilers: Checking arg -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. compilers: Already in lflags so skipping: -L/usr/local/lib compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Unknown arg /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lclang_rt.osx compilers: Already in lflags: -lclang_rt.osx compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-224.1 compilers: Unknown arg PROJECT:ld64-224.1 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/lib/clang/5.0/lib/darwin compilers: Unknown arg /usr/lib/clang/5.0/lib/darwin compilers: Checking arg /usr/lib/clang/5.0/lib/darwin compilers: Unknown arg /usr/lib/clang/5.0/lib/darwin compilers: Checking arg /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 compilers: Unknown arg /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Frameworks/ compilers: Unknown arg /Library/Frameworks/ compilers: Checking arg /System/Library/Frameworks/ compilers: Unknown arg /System/Library/Frameworks/ compilers: Libraries needed to link Fortran code with the C linker: ['-L/usr/lib/clang/5.0/lib/darwin', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/cxxobj.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/cxxobj.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces sh: uname -s Executing: uname -s sh: Darwin Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); abort(); } return; } Popping language C Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/fooobj.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/fooobj.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest sh: arrays [0x7fff5dcf0700 0x7fff5dcf0700 0x7fff5dcf0700] arrays [0x7fff5dcf06b0 0x7fff5dcf0660 0x7fff5dcf06b0] pointers do not match! [0x7fff89b714f0 0x7fff5dcf0700] [0x10] ERROR while running executable: Could not execute "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest": arrays [0x7fff5dcf0700 0x7fff5dcf0700 0x7fff5dcf0700] arrays [0x7fff5dcf06b0 0x7fff5dcf0660 0x7fff5dcf06b0] pointers do not match! [0x7fff89b714f0 0x7fff5dcf0700] [0x10] Program received signal SIGABRT: Process abort signal. Backtrace for this error: #0 0x101F1A0D7 #1 0x101F1A76E #2 0x7FFF89ACB909 Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/configtest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/configtest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option ‘-module’ } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module:/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module:/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option ‘-module:/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir’ } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fmod=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fmod=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option ‘-fmod=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir’ } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -J/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -J/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilers.py:1367) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1367) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/string.h" 2 3 4 typedef __darwin_size_t size_t; # 80 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 114 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 126 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 140 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strndup(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); size_t strnlen(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((availability(macosx,introduced=10.7))); void memset_pattern4(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern8(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern16(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 74 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((availability(macosx,introduced=10.5))); int fls(int) __attribute__((availability(macosx,introduced=10.5))); int flsl(long) __attribute__((availability(macosx,introduced=10.5))); # 1 "/usr/include/string.h" 1 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 407 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 246 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 255 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 36 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; typedef __darwin_wchar_t wchar_t; typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 145 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) __attribute__((availability(macosx,introduced=10.6))); void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ); size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 78 "/usr/include/i386/types.h" 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 256 "/usr/include/stdlib.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) __attribute__((availability(macosx,introduced=10.7))); void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) __attribute__((availability(macosx,introduced=10.7))); int atexit_b(void (^)(void)) __attribute__((availability(macosx,introduced=10.6))); void *bsearch_b(const void *, const void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((availability(macosx,introduced=10.0,deprecated=10.5))); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int heapsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 5 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 4 # 75 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 76 "/usr/include/sys/stat.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 80 "/usr/include/sys/stat.h" 2 3 4 # 153 "/usr/include/sys/stat.h" 3 4 struct ostat { __uint16_t st_dev; ino_t st_ino; mode_t st_mode; nlink_t st_nlink; __uint16_t st_uid; __uint16_t st_gid; __uint16_t st_rdev; __int32_t st_size; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; __int32_t st_blksize; __int32_t st_blocks; __uint32_t st_flags; __uint32_t st_gen; }; # 225 "/usr/include/sys/stat.h" 3 4 struct stat { dev_t st_dev; mode_t st_mode; nlink_t st_nlink; __darwin_ino64_t st_ino; uid_t st_uid; gid_t st_gid; dev_t st_rdev; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; struct timespec st_birthtimespec; off_t st_size; blkcnt_t st_blocks; blksize_t st_blksize; __uint32_t st_flags; __uint32_t st_gen; __int32_t st_lspare; __int64_t st_qspare[2]; }; # 264 "/usr/include/sys/stat.h" 3 4 struct stat64 { dev_t st_dev; mode_t st_mode; nlink_t st_nlink; __darwin_ino64_t st_ino; uid_t st_uid; gid_t st_gid; dev_t st_rdev; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; struct timespec st_birthtimespec; off_t st_size; blkcnt_t st_blocks; blksize_t st_blksize; __uint32_t st_flags; __uint32_t st_gen; __int32_t st_lspare; __int64_t st_qspare[2]; }; # 430 "/usr/include/sys/stat.h" 3 4 int chmod(const char *, mode_t) __asm("_" "chmod" ); int fchmod(int, mode_t) __asm("_" "fchmod" ); int fstat(int, struct stat *) __asm("_" "fstat" "$INODE64"); int lstat(const char *, struct stat *) __asm("_" "lstat" "$INODE64"); int mkdir(const char *, mode_t); int mkfifo(const char *, mode_t); int stat(const char *, struct stat *) __asm("_" "stat" "$INODE64"); int mknod(const char *, mode_t, dev_t); mode_t umask(mode_t); struct _filesec; typedef struct _filesec *filesec_t; int chflags(const char *, __uint32_t); int chmodx_np(const char *, filesec_t); int fchflags(int, __uint32_t); int fchmodx_np(int, filesec_t); int fstatx_np(int, struct stat *, filesec_t) __asm("_" "fstatx_np" "$INODE64"); int lchflags(const char *, __uint32_t) __attribute__((availability(macosx,introduced=10.5))); int lchmod(const char *, mode_t) __attribute__((availability(macosx,introduced=10.5))); int lstatx_np(const char *, struct stat *, filesec_t) __asm("_" "lstatx_np" "$INODE64"); int mkdirx_np(const char *, filesec_t); int mkfifox_np(const char *, filesec_t); int statx_np(const char *, struct stat *, filesec_t) __asm("_" "statx_np" "$INODE64"); int umaskx_np(filesec_t) __attribute__((availability(macosx,introduced=10.4,deprecated=10.6))); int fstatx64_np(int, struct stat64 *, filesec_t) __attribute__((availability(macosx,introduced=10.5,deprecated=10.6))); int lstatx64_np(const char *, struct stat64 *, filesec_t) __attribute__((availability(macosx,introduced=10.5,deprecated=10.6))); int statx64_np(const char *, struct stat64 *, filesec_t) __attribute__((availability(macosx,introduced=10.5,deprecated=10.6))); int fstat64(int, struct stat64 *) __attribute__((availability(macosx,introduced=10.5,deprecated=10.6))); int lstat64(const char *, struct stat64 *) __attribute__((availability(macosx,introduced=10.5,deprecated=10.6))); int stat64(const char *, struct stat64 *) __attribute__((availability(macosx,introduced=10.5,deprecated=10.6))); # 6 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 29 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" ================================================================================ TEST checkSysWait from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_time_t time_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 67 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 68 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 69 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 70 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/time.h" 2 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; struct itimerval { struct timeval it_interval; struct timeval it_value; }; # 144 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 187 "/usr/include/sys/time.h" 3 4 struct clockinfo { int hz; int tick; int tickadj; int stathz; int profhz; }; # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 199 "/usr/include/sys/time.h" 2 3 4 int adjtime(const struct timeval *, struct timeval *); int futimes(int, const struct timeval *); int lutimes(const char *, const struct timeval *) __attribute__((availability(macosx,introduced=10.5))); int settimeofday(const struct timeval *, const struct timezone *); int getitimer(int, struct itimerval *); int gettimeofday(struct timeval * restrict, void * restrict); # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, struct timeval * restrict) __asm("_" "select" "$1050") ; # 214 "/usr/include/sys/time.h" 2 3 4 int setitimer(int, const struct itimerval * restrict, struct itimerval * restrict); int utimes(const char *, const struct timeval *); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SYS_TIME_H" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:10:8: warning: if statement has empty body [-Wempty-body] if (tp); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:10:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 38 "/usr/include/math.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 39 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 40 "/usr/include/math.h" 2 3 4 # 52 "/usr/include/math.h" 3 4 typedef float float_t; typedef double double_t; # 110 "/usr/include/math.h" 3 4 extern int __math_errhandling(void); # 138 "/usr/include/math.h" 3 4 extern int __fpclassifyf(float); extern int __fpclassifyd(double); extern int __fpclassifyl(long double); # 182 "/usr/include/math.h" 3 4 static __inline__ int __inline_isfinitef(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isfinited(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isfinitel(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isinff(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isinfd(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isinfl(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnanf(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnand(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnanl(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnormalf(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnormald(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnormall(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_signbitf(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_signbitd(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_signbitl(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isfinitef(float __x) { return __x == __x && __builtin_fabsf(__x) != __builtin_inff(); } static __inline__ int __inline_isfinited(double __x) { return __x == __x && __builtin_fabs(__x) != __builtin_inf(); } static __inline__ int __inline_isfinitel(long double __x) { return __x == __x && __builtin_fabsl(__x) != __builtin_infl(); } static __inline__ int __inline_isinff(float __x) { return __builtin_fabsf(__x) == __builtin_inff(); } static __inline__ int __inline_isinfd(double __x) { return __builtin_fabs(__x) == __builtin_inf(); } static __inline__ int __inline_isinfl(long double __x) { return __builtin_fabsl(__x) == __builtin_infl(); } static __inline__ int __inline_isnanf(float __x) { return __x != __x; } static __inline__ int __inline_isnand(double __x) { return __x != __x; } static __inline__ int __inline_isnanl(long double __x) { return __x != __x; } static __inline__ int __inline_signbitf(float __x) { union { float __f; unsigned int __u; } __u; __u.__f = __x; return (int)(__u.__u >> 31); } static __inline__ int __inline_signbitd(double __x) { union { double __f; unsigned long long __u; } __u; __u.__f = __x; return (int)(__u.__u >> 63); } static __inline__ int __inline_signbitl(long double __x) { union { long double __ld; struct{ unsigned long long __m; unsigned short __sexp; } __p; } __u; __u.__ld = __x; return (int)(__u.__p.__sexp >> 15); } static __inline__ int __inline_isnormalf(float __x) { return __inline_isfinitef(__x) && __builtin_fabsf(__x) >= 1.17549435e-38F; } static __inline__ int __inline_isnormald(double __x) { return __inline_isfinited(__x) && __builtin_fabs(__x) >= 2.2250738585072014e-308; } static __inline__ int __inline_isnormall(long double __x) { return __inline_isfinitel(__x) && __builtin_fabsl(__x) >= 3.36210314311209350626e-4932L; } # 315 "/usr/include/math.h" 3 4 extern float acosf(float); extern double acos(double); extern long double acosl(long double); extern float asinf(float); extern double asin(double); extern long double asinl(long double); extern float atanf(float); extern double atan(double); extern long double atanl(long double); extern float atan2f(float, float); extern double atan2(double, double); extern long double atan2l(long double, long double); extern float cosf(float); extern double cos(double); extern long double cosl(long double); extern float sinf(float); extern double sin(double); extern long double sinl(long double); extern float tanf(float); extern double tan(double); extern long double tanl(long double); extern float acoshf(float); extern double acosh(double); extern long double acoshl(long double); extern float asinhf(float); extern double asinh(double); extern long double asinhl(long double); extern float atanhf(float); extern double atanh(double); extern long double atanhl(long double); extern float coshf(float); extern double cosh(double); extern long double coshl(long double); extern float sinhf(float); extern double sinh(double); extern long double sinhl(long double); extern float tanhf(float); extern double tanh(double); extern long double tanhl(long double); extern float expf(float); extern double exp(double); extern long double expl(long double); extern float exp2f(float); extern double exp2(double); extern long double exp2l(long double); extern float expm1f(float); extern double expm1(double); extern long double expm1l(long double); extern float logf(float); extern double log(double); extern long double logl(long double); extern float log10f(float); extern double log10(double); extern long double log10l(long double); extern float log2f(float); extern double log2(double); extern long double log2l(long double); extern float log1pf(float); extern double log1p(double); extern long double log1pl(long double); extern float logbf(float); extern double logb(double); extern long double logbl(long double); extern float modff(float, float *); extern double modf(double, double *); extern long double modfl(long double, long double *); extern float ldexpf(float, int); extern double ldexp(double, int); extern long double ldexpl(long double, int); extern float frexpf(float, int *); extern double frexp(double, int *); extern long double frexpl(long double, int *); extern int ilogbf(float); extern int ilogb(double); extern int ilogbl(long double); extern float scalbnf(float, int); extern double scalbn(double, int); extern long double scalbnl(long double, int); extern float scalblnf(float, long int); extern double scalbln(double, long int); extern long double scalblnl(long double, long int); extern float fabsf(float); extern double fabs(double); extern long double fabsl(long double); extern float cbrtf(float); extern double cbrt(double); extern long double cbrtl(long double); extern float hypotf(float, float); extern double hypot(double, double); extern long double hypotl(long double, long double); extern float powf(float, float); extern double pow(double, double); extern long double powl(long double, long double); extern float sqrtf(float); extern double sqrt(double); extern long double sqrtl(long double); extern float erff(float); extern double erf(double); extern long double erfl(long double); extern float erfcf(float); extern double erfc(double); extern long double erfcl(long double); extern float lgammaf(float); extern double lgamma(double); extern long double lgammal(long double); extern float tgammaf(float); extern double tgamma(double); extern long double tgammal(long double); extern float ceilf(float); extern double ceil(double); extern long double ceill(long double); extern float floorf(float); extern double floor(double); extern long double floorl(long double); extern float nearbyintf(float); extern double nearbyint(double); extern long double nearbyintl(long double); extern float rintf(float); extern double rint(double); extern long double rintl(long double); extern long int lrintf(float); extern long int lrint(double); extern long int lrintl(long double); extern float roundf(float); extern double round(double); extern long double roundl(long double); extern long int lroundf(float); extern long int lround(double); extern long int lroundl(long double); extern long long int llrintf(float); extern long long int llrint(double); extern long long int llrintl(long double); extern long long int llroundf(float); extern long long int llround(double); extern long long int llroundl(long double); extern float truncf(float); extern double trunc(double); extern long double truncl(long double); extern float fmodf(float, float); extern double fmod(double, double); extern long double fmodl(long double, long double); extern float remainderf(float, float); extern double remainder(double, double); extern long double remainderl(long double, long double); extern float remquof(float, float, int *); extern double remquo(double, double, int *); extern long double remquol(long double, long double, int *); extern float copysignf(float, float); extern double copysign(double, double); extern long double copysignl(long double, long double); extern float nanf(const char *); extern double nan(const char *); extern long double nanl(const char *); extern float nextafterf(float, float); extern double nextafter(double, double); extern long double nextafterl(long double, long double); extern double nexttoward(double, long double); extern float nexttowardf(float, long double); extern long double nexttowardl(long double, long double); extern float fdimf(float, float); extern double fdim(double, double); extern long double fdiml(long double, long double); extern float fmaxf(float, float); extern double fmax(double, double); extern long double fmaxl(long double, long double); extern float fminf(float, float); extern double fmin(double, double); extern long double fminl(long double, long double); extern float fmaf(float, float, float); extern double fma(double, double, double); extern long double fmal(long double, long double, long double); # 558 "/usr/include/math.h" 3 4 extern float __inff(void) __attribute__((availability(macosx,introduced=10.0))); extern double __inf(void) __attribute__((availability(macosx,introduced=10.0))); extern long double __infl(void) __attribute__((availability(macosx,introduced=10.0))); extern float __nan(void) __attribute__((availability(macosx,introduced=10.0))); # 579 "/usr/include/math.h" 3 4 extern double j0(double) __attribute__((availability(macosx,introduced=10.0))); extern double j1(double) __attribute__((availability(macosx,introduced=10.0))); extern double jn(int, double) __attribute__((availability(macosx,introduced=10.0))); extern double y0(double) __attribute__((availability(macosx,introduced=10.0))); extern double y1(double) __attribute__((availability(macosx,introduced=10.0))); extern double yn(int, double) __attribute__((availability(macosx,introduced=10.0))); extern double scalb(double, double); extern int signgam; # 624 "/usr/include/math.h" 3 4 extern long int rinttol(double) __attribute__((availability(macosx,introduced=10.0))); extern long int roundtol(double) __attribute__((availability(macosx,introduced=10.0))); extern double drem(double, double) __attribute__((availability(macosx,introduced=10.0))); extern int finite(double) __attribute__((availability(macosx,introduced=10.0))); extern double gamma(double) __attribute__((availability(macosx,introduced=10.0))); extern double significand(double) __attribute__((availability(macosx,introduced=10.0))); struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr(struct exception *) __attribute__((availability(macosx,introduced=10.0))); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_MATH_H" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 81 "/usr/include/sys/socket.h" 2 3 4 # 106 "/usr/include/sys/socket.h" 3 4 typedef __uint8_t sa_family_t; typedef __darwin_socklen_t socklen_t; # 131 "/usr/include/sys/socket.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 220 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 238 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 326 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 339 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 359 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 469 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 509 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 599 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * restrict, socklen_t * restrict); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) __attribute__((availability(macosx,introduced=10.5))); int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_time_t time_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'endian.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'endian.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 61 "/usr/include/strings.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/strings.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/strings.h" 2 3 4 typedef __darwin_size_t size_t; int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((availability(macosx,introduced=10.5))); int fls(int) __attribute__((availability(macosx,introduced=10.5))); int flsl(long) __attribute__((availability(macosx,introduced=10.5))); # 1 "/usr/include/string.h" 1 3 4 # 80 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 114 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 126 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 140 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strndup(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); size_t strnlen(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((availability(macosx,introduced=10.7))); void memset_pattern4(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern8(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern16(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 29 "/usr/include/sched.h" 2 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/cxxabi.h" 1 3 4 # 18 "/usr/include/cxxabi.h" 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stddef.h" 1 3 4 # 34 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; typedef long unsigned int size_t; # 62 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef int wchar_t; # 19 "/usr/include/cxxabi.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stdint.h" 1 3 4 # 33 "/usr/bin/../lib/clang/5.0/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 34 "/usr/bin/../lib/clang/5.0/include/stdint.h" 2 3 4 # 20 "/usr/include/cxxabi.h" 2 3 4 namespace std { class type_info; } namespace __cxxabiv1 { extern "C" { extern void * __cxa_allocate_exception(size_t thrown_size) throw(); extern void __cxa_free_exception(void * thrown_exception) throw(); extern void __cxa_throw(void * thrown_exception, struct std::type_info * tinfo, void (*dest)(void *)); extern void * __cxa_get_exception_ptr(void * exceptionObject) throw(); extern void * __cxa_begin_catch(void * exceptionObject) throw(); extern void __cxa_end_catch(); extern std::type_info * __cxa_current_exception_type(); extern void __cxa_rethrow(); extern void __cxa_bad_cast(); extern void __cxa_bad_typeid(); extern void __cxa_pure_virtual(void); extern int __cxa_guard_acquire(uint64_t*); extern void __cxa_guard_release(uint64_t*); extern void __cxa_guard_abort(uint64_t*); extern void* __cxa_vec_new(size_t element_count, size_t element_size, size_t padding_size, void (*constructor)(void*), void (*destructor)(void*) ); extern void* __cxa_vec_new2(size_t element_count, size_t element_size, size_t padding_size, void (*constructor)(void*), void (*destructor)(void*), void* (*alloc)(size_t), void (*dealloc)(void*) ); extern void* __cxa_vec_new3(size_t element_count, size_t element_size, size_t padding_size, void (*constructor)(void*), void (*destructor)(void*), void* (*alloc)(size_t), void (*dealloc)(void*, size_t) ); extern void __cxa_vec_ctor(void* array_address, size_t element_count, size_t element_size, void (*constructor)(void*), void (*destructor)(void*) ); extern void __cxa_vec_dtor(void* array_address, size_t element_count, size_t element_size, void (*destructor)(void*) ); extern void __cxa_vec_cleanup(void* array_address, size_t element_count, size_t element_size, void (*destructor)(void*) ); extern void __cxa_vec_delete(void* array_address, size_t element_size, size_t padding_size, void (*destructor)(void*) ); extern void __cxa_vec_delete2(void* array_address, size_t element_size, size_t padding_size, void (*destructor)(void*), void (*dealloc)(void*) ); extern void __cxa_vec_delete3(void* __array_address, size_t element_size, size_t padding_size, void (*destructor)(void*), void (*dealloc) (void*, size_t)); extern void __cxa_vec_cctor(void* dest_array, void* src_array, size_t element_count, size_t element_size, void (*constructor) (void*, void*), void (*destructor)(void*) ); extern int __cxa_atexit(void (*f)(void*), void* p, void* d); extern int __cxa_finalize(void*); extern char* __cxa_demangle(const char* mangled_name, char* output_buffer, size_t* length, int* status); } } namespace abi = __cxxabiv1; namespace __cxxabiapple { extern "C" { extern void (*__cxa_terminate_handler)(); extern void (*__cxa_unexpected_handler)(); extern void (*__cxa_new_handler)(); extern void * __cxa_current_primary_exception() throw(); extern void __cxa_rethrow_primary_exception(void* primary_exception); extern void __cxa_increment_exception_refcount(void* primary_exception) throw(); extern void __cxa_decrement_exception_refcount(void* primary_exception) throw(); extern bool __cxa_uncaught_exception() throw(); } } # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_CXXABI_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 67 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 68 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 69 "/usr/include/sys/wait.h" 2 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 407 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 71 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 72 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 246 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 255 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 407 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 246 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 255 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 36 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; typedef __darwin_wchar_t wchar_t; typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 145 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) __attribute__((availability(macosx,introduced=10.6))); void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ); size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 78 "/usr/include/i386/types.h" 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 256 "/usr/include/stdlib.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) __attribute__((availability(macosx,introduced=10.7))); void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) __attribute__((availability(macosx,introduced=10.7))); int atexit_b(void (^)(void)) __attribute__((availability(macosx,introduced=10.6))); void *bsearch_b(const void *, const void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((availability(macosx,introduced=10.0,deprecated=10.5))); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int heapsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 55 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 56 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 58 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 35 "/usr/include/sched.h" 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 60 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 69 "/usr/include/time.h" 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_time_t time_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 61 "/usr/include/pthread.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_mach_port_t mach_port_t; typedef __darwin_sigset_t sigset_t; # 147 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 148 "/usr/include/pthread.h" 2 3 4 # 250 "/usr/include/pthread.h" 3 4 int pthread_atfork(void (*)(void), void (*)(void), void (*)(void)); int pthread_attr_destroy(pthread_attr_t *); int pthread_attr_getdetachstate(const pthread_attr_t *, int *); int pthread_attr_getguardsize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_getinheritsched(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getschedparam(const pthread_attr_t * restrict, struct sched_param * restrict); int pthread_attr_getschedpolicy(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getscope(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getstack(const pthread_attr_t * restrict, void ** restrict, size_t * restrict); int pthread_attr_getstackaddr(const pthread_attr_t * restrict, void ** restrict); int pthread_attr_getstacksize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_init(pthread_attr_t *); int pthread_attr_setdetachstate(pthread_attr_t *, int ); int pthread_attr_setguardsize(pthread_attr_t *, size_t ); int pthread_attr_setinheritsched(pthread_attr_t *, int ); int pthread_attr_setschedparam(pthread_attr_t * restrict, const struct sched_param * restrict); int pthread_attr_setschedpolicy(pthread_attr_t *, int ); int pthread_attr_setscope(pthread_attr_t *, int); int pthread_attr_setstack(pthread_attr_t *, void *, size_t ); int pthread_attr_setstackaddr(pthread_attr_t *, void *); int pthread_attr_setstacksize(pthread_attr_t *, size_t ); int pthread_cancel(pthread_t ) __asm("_" "pthread_cancel" ); int pthread_cond_broadcast(pthread_cond_t *); int pthread_cond_destroy(pthread_cond_t *); int pthread_cond_init(pthread_cond_t * restrict, const pthread_condattr_t * restrict) __asm("_" "pthread_cond_init" ); int pthread_cond_signal(pthread_cond_t *); int pthread_cond_timedwait(pthread_cond_t * restrict, pthread_mutex_t * restrict, const struct timespec * restrict) __asm("_" "pthread_cond_timedwait" ); int pthread_cond_wait(pthread_cond_t * restrict, pthread_mutex_t * restrict) __asm("_" "pthread_cond_wait" ); int pthread_condattr_destroy(pthread_condattr_t *); int pthread_condattr_init(pthread_condattr_t *); int pthread_condattr_getpshared(const pthread_condattr_t * restrict, int * restrict); int pthread_condattr_setpshared(pthread_condattr_t *, int ); int pthread_create(pthread_t * restrict, const pthread_attr_t * restrict, void *(*)(void *), void * restrict); int pthread_detach(pthread_t ); int pthread_equal(pthread_t , pthread_t ); void pthread_exit(void *) __attribute__((noreturn)); int pthread_getconcurrency(void); int pthread_getschedparam(pthread_t , int * restrict, struct sched_param * restrict); void *pthread_getspecific(pthread_key_t ); int pthread_join(pthread_t , void **) __asm("_" "pthread_join" ); int pthread_key_create(pthread_key_t *, void (*)(void *)); int pthread_key_delete(pthread_key_t ); int pthread_mutex_destroy(pthread_mutex_t *); int pthread_mutex_getprioceiling(const pthread_mutex_t * restrict, int * restrict); int pthread_mutex_init(pthread_mutex_t * restrict, const pthread_mutexattr_t * restrict); int pthread_mutex_lock(pthread_mutex_t *); int pthread_mutex_setprioceiling(pthread_mutex_t * restrict, int, int * restrict); int pthread_mutex_trylock(pthread_mutex_t *); int pthread_mutex_unlock(pthread_mutex_t *); int pthread_mutexattr_destroy(pthread_mutexattr_t *) __asm("_" "pthread_mutexattr_destroy" ); int pthread_mutexattr_getprioceiling(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getprotocol(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getpshared(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_gettype(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_init(pthread_mutexattr_t *); int pthread_mutexattr_setprioceiling(pthread_mutexattr_t *, int); int pthread_mutexattr_setprotocol(pthread_mutexattr_t *, int); int pthread_mutexattr_setpshared(pthread_mutexattr_t *, int ); int pthread_mutexattr_settype(pthread_mutexattr_t *, int); int pthread_once(pthread_once_t *, void (*)(void)); int pthread_rwlock_destroy(pthread_rwlock_t * ) __asm("_" "pthread_rwlock_destroy" ); int pthread_rwlock_init(pthread_rwlock_t * restrict, const pthread_rwlockattr_t * restrict) __asm("_" "pthread_rwlock_init" ); int pthread_rwlock_rdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_rdlock" ); int pthread_rwlock_tryrdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_tryrdlock" ); int pthread_rwlock_trywrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_trywrlock" ); int pthread_rwlock_wrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_wrlock" ); int pthread_rwlock_unlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_unlock" ); int pthread_rwlockattr_destroy(pthread_rwlockattr_t *); int pthread_rwlockattr_getpshared(const pthread_rwlockattr_t * restrict, int * restrict); int pthread_rwlockattr_init(pthread_rwlockattr_t *); int pthread_rwlockattr_setpshared(pthread_rwlockattr_t *, int ); pthread_t pthread_self(void); int pthread_setcancelstate(int , int *) __asm("_" "pthread_setcancelstate" ); int pthread_setcanceltype(int , int *) __asm("_" "pthread_setcanceltype" ); int pthread_setconcurrency(int); int pthread_setschedparam(pthread_t , int , const struct sched_param *); int pthread_setspecific(pthread_key_t , const void *); void pthread_testcancel(void) __asm("_" "pthread_testcancel" ); int pthread_is_threaded_np(void); int pthread_threadid_np(pthread_t,__uint64_t*) __attribute__((availability(macosx,introduced=10.6))); int pthread_rwlock_longrdlock_np(pthread_rwlock_t *) __attribute__((availability(macosx,introduced=10.7))); int pthread_rwlock_yieldwrlock_np(pthread_rwlock_t *) __attribute__((availability(macosx,introduced=10.7))); int pthread_rwlock_downgrade_np(pthread_rwlock_t *); int pthread_rwlock_upgrade_np(pthread_rwlock_t *); int pthread_rwlock_tryupgrade_np(pthread_rwlock_t *); int pthread_rwlock_held_np(pthread_rwlock_t *); int pthread_rwlock_rdheld_np(pthread_rwlock_t *); int pthread_rwlock_wrheld_np(pthread_rwlock_t *); int pthread_getname_np(pthread_t,char*,size_t) __attribute__((availability(macosx,introduced=10.6))); int pthread_setname_np(const char*) __attribute__((availability(macosx,introduced=10.6))); int pthread_main_np(void); mach_port_t pthread_mach_thread_np(pthread_t); size_t pthread_get_stacksize_np(pthread_t); void * pthread_get_stackaddr_np(pthread_t); int pthread_cond_signal_thread_np(pthread_cond_t *, pthread_t); int pthread_cond_timedwait_relative_np(pthread_cond_t *, pthread_mutex_t *, const struct timespec *); int pthread_create_suspended_np(pthread_t *, const pthread_attr_t *, void *(*)(void *), void *); int pthread_kill(pthread_t, int); pthread_t pthread_from_mach_thread_np(mach_port_t) __attribute__((availability(macosx,introduced=10.5))); int pthread_sigmask(int, const sigset_t *, sigset_t *) __asm("_" "pthread_sigmask" ); void pthread_yield_np(void); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 26 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 27 "/usr/include/setjmp.h" 2 3 4 # 36 "/usr/include/setjmp.h" 3 4 typedef int jmp_buf[((9 * 2) + 3 + 16)]; typedef int sigjmp_buf[((9 * 2) + 3 + 16) + 1]; # 73 "/usr/include/setjmp.h" 3 4 extern int setjmp(jmp_buf); extern void longjmp(jmp_buf, int) __attribute__((noreturn)); int _setjmp(jmp_buf); void _longjmp(jmp_buf, int) __attribute__((noreturn)); int sigsetjmp(sigjmp_buf, int); void siglongjmp(sigjmp_buf, int) __attribute__((noreturn)); void longjmperror(void); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 70 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 71 "/usr/include/sys/utsname.h" 2 3 4 struct utsname { char sysname[256]; char nodename[256]; char release[256]; char version[256]; char machine[256]; }; int uname(struct utsname *); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 69 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 70 "/usr/include/i386/endian.h" 2 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 40 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 41 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/bin/../lib/clang/5.0/include/limits.h" 1 3 4 # 38 "/usr/bin/../lib/clang/5.0/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 63 "/usr/include/limits.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 64 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 66 "/usr/include/limits.h" 2 3 4 # 39 "/usr/bin/../lib/clang/5.0/include/limits.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 23 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 78 "/usr/include/sys/fcntl.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 79 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 81 "/usr/include/sys/fcntl.h" 2 3 4 typedef __darwin_size_t size_t; typedef __darwin_mode_t mode_t; typedef __darwin_off_t off_t; typedef __darwin_pid_t pid_t; # 359 "/usr/include/sys/fcntl.h" 3 4 struct flock { off_t l_start; off_t l_len; pid_t l_pid; short l_type; short l_whence; }; # 374 "/usr/include/sys/fcntl.h" 3 4 struct radvisory { off_t ra_offset; int ra_count; }; # 386 "/usr/include/sys/fcntl.h" 3 4 typedef struct fsignatures { off_t fs_file_start; void *fs_blob_start; size_t fs_blob_size; } fsignatures_t; # 400 "/usr/include/sys/fcntl.h" 3 4 typedef struct fstore { unsigned int fst_flags; int fst_posmode; off_t fst_offset; off_t fst_length; off_t fst_bytesalloc; } fstore_t; typedef struct fbootstraptransfer { off_t fbt_offset; size_t fbt_length; void *fbt_buffer; } fbootstraptransfer_t; # 438 "/usr/include/sys/fcntl.h" 3 4 #pragma pack(4) struct log2phys { unsigned int l2p_flags; off_t l2p_contigbytes; off_t l2p_devoffset; }; #pragma pack() # 461 "/usr/include/sys/fcntl.h" 3 4 struct _filesec; typedef struct _filesec *filesec_t; typedef enum { FILESEC_OWNER = 1, FILESEC_GROUP = 2, FILESEC_UUID = 3, FILESEC_MODE = 4, FILESEC_ACL = 5, FILESEC_GRPUUID = 6, FILESEC_ACL_RAW = 100, FILESEC_ACL_ALLOCSIZE = 101 } filesec_property_t; int open(const char *, int, ...) __asm("_" "open" ); int creat(const char *, mode_t) __asm("_" "creat" ); int fcntl(int, int, ...) __asm("_" "fcntl" ); int openx_np(const char *, int, filesec_t); int open_dprotected_np ( const char *, int, int, int, ...); int flock(int, int); filesec_t filesec_init(void); filesec_t filesec_dup(filesec_t); void filesec_free(filesec_t); int filesec_get_property(filesec_t, filesec_property_t, void *); int filesec_query_property(filesec_t, filesec_property_t, int *); int filesec_set_property(filesec_t, filesec_property_t, const void *); int filesec_unset_property(filesec_t, filesec_property_t) __attribute__((availability(macosx,introduced=10.6))); # 24 "/usr/include/fcntl.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/string.h" 2 3 4 typedef __darwin_size_t size_t; # 80 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 114 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 126 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 140 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strndup(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); size_t strnlen(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((availability(macosx,introduced=10.7))); void memset_pattern4(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern8(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern16(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 74 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((availability(macosx,introduced=10.5))); int fls(int) __attribute__((availability(macosx,introduced=10.5))); int flsl(long) __attribute__((availability(macosx,introduced=10.5))); # 1 "/usr/include/string.h" 1 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: memory.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/memory.h" 1 3 4 # 36 "/usr/include/memory.h" 3 4 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/string.h" 2 3 4 typedef __darwin_size_t size_t; # 80 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 114 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 126 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 140 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strndup(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); size_t strnlen(const char *, size_t) __attribute__((availability(macosx,introduced=10.7))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((availability(macosx,introduced=10.7))); void memset_pattern4(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern8(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); void memset_pattern16(void *, const void *, size_t) __attribute__((availability(macosx,introduced=10.5))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 74 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((availability(macosx,introduced=10.5))); int fls(int) __attribute__((availability(macosx,introduced=10.5))); int flsl(long) __attribute__((availability(macosx,introduced=10.5))); # 1 "/usr/include/string.h" 1 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char *restrict __dest, const char *restrict __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char *restrict __dest, const char *restrict __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 37 "/usr/include/memory.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_MEMORY_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 72 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 74 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 75 "/usr/include/sys/times.h" 2 3 4 typedef __darwin_clock_t clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t times(struct tms *); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/bin/../lib/clang/5.0/include/stdint.h" 1 3 4 # 33 "/usr/bin/../lib/clang/5.0/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 34 "/usr/bin/../lib/clang/5.0/include/stdint.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 46 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 47 "/usr/include/pwd.h" 2 3 4 typedef __darwin_gid_t gid_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; # 96 "/usr/include/pwd.h" 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; __darwin_time_t pw_change; char *pw_class; char *pw_gecos; char *pw_dir; char *pw_shell; __darwin_time_t pw_expire; }; struct passwd *getpwuid(uid_t); struct passwd *getpwnam(const char *); int getpwuid_r(uid_t, struct passwd *, char *, size_t, struct passwd **); int getpwnam_r(const char *, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent(void); void setpwent(void); void endpwent(void); # 1 "/usr/include/uuid/uuid.h" 1 3 4 # 42 "/usr/include/uuid/uuid.h" 3 4 typedef __darwin_uuid_t uuid_t; typedef __darwin_uuid_string_t uuid_string_t; # 57 "/usr/include/uuid/uuid.h" 3 4 void uuid_clear(uuid_t uu); int uuid_compare(const uuid_t uu1, const uuid_t uu2); void uuid_copy(uuid_t dst, const uuid_t src); void uuid_generate(uuid_t out); void uuid_generate_random(uuid_t out); void uuid_generate_time(uuid_t out); int uuid_is_null(const uuid_t uu); int uuid_parse(const uuid_string_t in, uuid_t uu); void uuid_unparse(const uuid_t uu, uuid_string_t out); void uuid_unparse_lower(const uuid_t uu, uuid_string_t out); void uuid_unparse_upper(const uuid_t uu, uuid_string_t out); # 123 "/usr/include/pwd.h" 2 3 4 int setpassent(int); char *user_from_uid(uid_t, int); struct passwd *getpwuuid(uuid_t); int getpwuuid_r(uuid_t, struct passwd *, char *, size_t, struct passwd **); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/bin/../lib/clang/5.0/include/float.h" 1 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 79 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 78 "/usr/include/i386/types.h" 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 87 "/usr/include/sys/param.h" 2 3 4 # 96 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 97 "/usr/include/sys/param.h" 2 3 4 # 110 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/machine/param.h" 1 3 4 # 35 "/usr/include/machine/param.h" 3 4 # 1 "/usr/include/i386/param.h" 1 3 4 # 75 "/usr/include/i386/param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 76 "/usr/include/i386/param.h" 2 3 4 # 36 "/usr/include/machine/param.h" 2 3 4 # 111 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/limits.h" 1 3 4 # 38 "/usr/bin/../lib/clang/5.0/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 64 "/usr/include/limits.h" 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 39 "/usr/bin/../lib/clang/5.0/include/limits.h" 2 3 4 # 114 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 162 "/usr/include/sys/signal.h" 3 4 typedef __darwin_sigset_t sigset_t; # 175 "/usr/include/sys/signal.h" 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 407 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/param.h" 2 3 4 # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 86 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 87 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stdint.h" 1 3 4 # 33 "/usr/bin/../lib/clang/5.0/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 34 "/usr/bin/../lib/clang/5.0/include/stdint.h" 2 3 4 # 88 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 66 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 71 "/usr/include/netinet/in.h" 2 3 4 typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 80 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 114 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; # 135 "/usr/include/sys/types.h" 3 4 typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 106 "/usr/include/sys/socket.h" 3 4 typedef __uint8_t sa_family_t; typedef __darwin_socklen_t socklen_t; # 131 "/usr/include/sys/socket.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 220 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 238 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 326 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 339 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 359 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 469 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 509 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 599 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * restrict, socklen_t * restrict); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) __attribute__((availability(macosx,introduced=10.5))); int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 88 "/usr/include/netinet/in.h" 2 3 4 # 307 "/usr/include/netinet/in.h" 3 4 struct in_addr { in_addr_t s_addr; }; # 380 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { __uint8_t sin_len; sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; char sin_zero[8]; }; # 398 "/usr/include/netinet/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; # 506 "/usr/include/netinet/in.h" 3 4 struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; #pragma pack(4) struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_sourceaddr; struct in_addr imr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; # 554 "/usr/include/netinet/in.h" 3 4 struct __msfilterreq { uint32_t msfr_ifindex; uint32_t msfr_fmode; uint32_t msfr_nsrcs; uint32_t __msfr_align; struct sockaddr_storage msfr_group; struct sockaddr_storage *msfr_srcs; }; #pragma pack() struct sockaddr; int setipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t, uint32_t, struct in_addr *) __attribute__((availability(macosx,introduced=10.7))); int getipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t *, uint32_t *, struct in_addr *) __attribute__((availability(macosx,introduced=10.7))); int setsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t, uint32_t, struct sockaddr_storage *) __attribute__((availability(macosx,introduced=10.7))); int getsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t *, uint32_t *, struct sockaddr_storage *) __attribute__((availability(macosx,introduced=10.7))); # 617 "/usr/include/netinet/in.h" 3 4 struct in_pktinfo { unsigned int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 661 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/netinet6/in6.h" 1 3 4 # 158 "/usr/include/netinet6/in6.h" 3 4 struct in6_addr { union { __uint8_t __u6_addr8[16]; __uint16_t __u6_addr16[8]; __uint32_t __u6_addr32[4]; } __u6_addr; }; # 176 "/usr/include/netinet6/in6.h" 3 4 struct sockaddr_in6 { __uint8_t sin6_len; sa_family_t sin6_family; in_port_t sin6_port; __uint32_t sin6_flowinfo; struct in6_addr sin6_addr; __uint32_t sin6_scope_id; }; # 218 "/usr/include/netinet6/in6.h" 3 4 extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; extern const struct in6_addr in6addr_nodelocal_allnodes; extern const struct in6_addr in6addr_linklocal_allnodes; extern const struct in6_addr in6addr_linklocal_allrouters; extern const struct in6_addr in6addr_linklocal_allv2routers; # 526 "/usr/include/netinet6/in6.h" 3 4 struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 622 "/usr/include/netinet6/in6.h" 3 4 struct cmsghdr; extern int inet6_option_space(int); extern int inet6_option_init(void *, struct cmsghdr **, int); extern int inet6_option_append(struct cmsghdr *, const __uint8_t *, int, int); extern __uint8_t *inet6_option_alloc(struct cmsghdr *, int, int, int); extern int inet6_option_next(const struct cmsghdr *, __uint8_t **); extern int inet6_option_find(const struct cmsghdr *, __uint8_t **, int); extern size_t inet6_rthdr_space(int, int); extern struct cmsghdr *inet6_rthdr_init(void *, int); extern int inet6_rthdr_add(struct cmsghdr *, const struct in6_addr *, unsigned int); extern int inet6_rthdr_lasthop(struct cmsghdr *, unsigned int); extern int inet6_rthdr_segments(const struct cmsghdr *); extern struct in6_addr *inet6_rthdr_getaddr(struct cmsghdr *, int); extern int inet6_rthdr_getflags(const struct cmsghdr *, int); extern int inet6_opt_init(void *, socklen_t); extern int inet6_opt_append(void *, socklen_t, int, __uint8_t, socklen_t, __uint8_t, void **); extern int inet6_opt_finish(void *, socklen_t, int); extern int inet6_opt_set_val(void *, int, void *, socklen_t); extern int inet6_opt_next(void *, socklen_t, int, __uint8_t *, socklen_t *, void **); extern int inet6_opt_find(void *, socklen_t, int, __uint8_t, socklen_t *, void **); extern int inet6_opt_get_val(void *, int, void *, socklen_t); extern socklen_t inet6_rth_space(int, int); extern void *inet6_rth_init(void *, socklen_t, int, int); extern int inet6_rth_add(void *, const struct in6_addr *); extern int inet6_rth_reverse(const void *, void *); extern int inet6_rth_segments(const void *); extern struct in6_addr *inet6_rth_getaddr(const void *, int); extern void addrsel_policy_init(void); # 662 "/usr/include/netinet/in.h" 2 3 4 int bindresvport(int, struct sockaddr_in *); struct sockaddr; int bindresvport_sa(int, struct sockaddr *); # 89 "/usr/include/netdb.h" 2 3 4 # 108 "/usr/include/netdb.h" 3 4 extern int h_errno; # 119 "/usr/include/netdb.h" 3 4 struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; int p_proto; }; struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; char *ai_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; struct rpcent { char *r_name; char **r_aliases; int r_number; }; # 266 "/usr/include/netdb.h" 3 4 void endhostent(void); void endnetent(void); void endprotoent(void); void endservent(void); void freeaddrinfo(struct addrinfo *); const char *gai_strerror(int); int getaddrinfo(const char * restrict, const char * restrict, const struct addrinfo * restrict, struct addrinfo ** restrict); struct hostent *gethostbyaddr(const void *, socklen_t, int); struct hostent *gethostbyname(const char *); struct hostent *gethostent(void); int getnameinfo(const struct sockaddr * restrict, socklen_t, char * restrict, socklen_t, char * restrict, socklen_t, int); struct netent *getnetbyaddr(uint32_t, int); struct netent *getnetbyname(const char *); struct netent *getnetent(void); struct protoent *getprotobyname(const char *); struct protoent *getprotobynumber(int); struct protoent *getprotoent(void); struct servent *getservbyname(const char *, const char *); struct servent *getservbyport(int, const char *); struct servent *getservent(void); void sethostent(int); void setnetent(int); void setprotoent(int); void setservent(int); void freehostent(struct hostent *); struct hostent *gethostbyname2(const char *, int); struct hostent *getipnodebyaddr(const void *, size_t, int, int *); struct hostent *getipnodebyname(const char *, int, int, int *); struct rpcent *getrpcbyname(const char *name); struct rpcent *getrpcbynumber(int number); struct rpcent *getrpcent(void); void setrpcent(int stayopen); void endrpcent(void); void herror(const char *); const char *hstrerror(int); int innetgr(const char *, const char *, const char *, const char *); int getnetgrent(char **, char **, char **); void endnetgrent(void); void setnetgrent(const char *); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 14 "/usr/include/search.h" 2 3 4 typedef __darwin_size_t size_t; typedef struct entry { char *key; void *data; } ENTRY; typedef enum { FIND, ENTER } ACTION; typedef enum { preorder, postorder, endorder, leaf } VISIT; # 49 "/usr/include/search.h" 3 4 int hcreate(size_t); void hdestroy(void); ENTRY *hsearch(ENTRY, ACTION); void insque(void *, void *); void *lfind(const void *, const void *, size_t *, size_t, int (*)(const void *, const void *)); void *lsearch(const void *, void *, size_t *, size_t, int (*)(const void *, const void *)); void remque(void *); void *tdelete(const void * restrict, void ** restrict, int (*)(const void *, const void *)); void *tfind(const void *, void * const *, int (*)(const void *, const void *)); void *tsearch(const void *, void **, int (*)(const void *, const void *)); void twalk(const void *, void (*)(const void *, VISIT, int)); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'mathimf.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'mathimf.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 67 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 68 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 69 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 70 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 72 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 typedef __darwin_id_t id_t; typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 246 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 71 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 72 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 138 "/usr/include/sys/unistd.h" 3 4 struct accessx_descriptor { unsigned int ad_name_offset; int ad_flags; int ad_pad[2]; }; # 73 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 74 "/usr/include/unistd.h" 2 3 4 typedef __darwin_gid_t gid_t; typedef __darwin_intptr_t intptr_t; typedef __darwin_off_t off_t; typedef __darwin_pid_t pid_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_uid_t uid_t; typedef __darwin_useconds_t useconds_t; # 459 "/usr/include/unistd.h" 3 4 void _exit(int) __attribute__((noreturn)); int access(const char *, int); unsigned int alarm(unsigned int); int chdir(const char *); int chown(const char *, uid_t, gid_t); int close(int) __asm("_" "close" ); int dup(int); int dup2(int, int); int execl(const char *, const char *, ...); int execle(const char *, const char *, ...); int execlp(const char *, const char *, ...); int execv(const char *, char * const *); int execve(const char *, char * const *, char * const *); int execvp(const char *, char * const *); pid_t fork(void); long fpathconf(int, int); char *getcwd(char *, size_t); gid_t getegid(void); uid_t geteuid(void); gid_t getgid(void); int getgroups(int, gid_t []); char *getlogin(void); pid_t getpgrp(void); pid_t getpid(void); pid_t getppid(void); uid_t getuid(void); int isatty(int); int link(const char *, const char *); off_t lseek(int, off_t, int); long pathconf(const char *, int); int pause(void) __asm("_" "pause" ); int pipe(int [2]); ssize_t read(int, void *, size_t) __asm("_" "read" ); int rmdir(const char *); int setgid(gid_t); int setpgid(pid_t, pid_t); pid_t setsid(void); int setuid(uid_t); unsigned int sleep(unsigned int) __asm("_" "sleep" ); long sysconf(int); pid_t tcgetpgrp(int); int tcsetpgrp(int, pid_t); char *ttyname(int); int ttyname_r(int, char *, size_t) __asm("_" "ttyname_r" ); int unlink(const char *); ssize_t write(int, const void *, size_t) __asm("_" "write" ); # 536 "/usr/include/unistd.h" 3 4 size_t confstr(int, char *, size_t) __asm("_" "confstr" ); int getopt(int, char * const [], const char *) __asm("_" "getopt" ); extern char *optarg; extern int optind, opterr, optopt; # 565 "/usr/include/unistd.h" 3 4 void *brk(const void *); int chroot(const char *) ; char *crypt(const char *, const char *); char *ctermid(char *); void encrypt(char *, int) __asm("_" "encrypt" ); int fchdir(int); long gethostid(void); pid_t getpgid(pid_t); pid_t getsid(pid_t); int getdtablesize(void) ; int getpagesize(void) __attribute__((const)) ; char *getpass(const char *) ; char *getwd(char *) ; int lchown(const char *, uid_t, gid_t) __asm("_" "lchown" ); int lockf(int, int, off_t) __asm("_" "lockf" ); int nice(int) __asm("_" "nice" ); ssize_t pread(int, void *, size_t, off_t) __asm("_" "pread" ); ssize_t pwrite(int, const void *, size_t, off_t) __asm("_" "pwrite" ); void *sbrk(int); pid_t setpgrp(void) __asm("_" "setpgrp" ); int setregid(gid_t, gid_t) __asm("_" "setregid" ); int setreuid(uid_t, uid_t) __asm("_" "setreuid" ); void swab(const void * restrict, void * restrict, ssize_t); void sync(void); int truncate(const char *, off_t); useconds_t ualarm(useconds_t, useconds_t); int usleep(useconds_t) __asm("_" "usleep" ); pid_t vfork(void); int fsync(int) __asm("_" "fsync" ); int ftruncate(int, off_t); int getlogin_r(char *, size_t); # 648 "/usr/include/unistd.h" 3 4 int fchown(int, uid_t, gid_t); int gethostname(char *, size_t); ssize_t readlink(const char * restrict, char * restrict, size_t); int setegid(gid_t); int seteuid(uid_t); int symlink(const char *, const char *); # 662 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 66 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/sys/select.h" 2 3 4 # 78 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/select.h" 2 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; typedef __darwin_sigset_t sigset_t; # 137 "/usr/include/sys/select.h" 3 4 int pselect(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, const struct timespec * restrict, const sigset_t * restrict) __asm("_" "pselect" "$1050") ; # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, struct timeval * restrict) __asm("_" "select" "$1050") ; # 153 "/usr/include/sys/select.h" 2 3 4 # 663 "/usr/include/unistd.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; typedef __darwin_uuid_t uuid_t; void _Exit(int) __attribute__((noreturn)); int accessx_np(const struct accessx_descriptor *, size_t, int *, uid_t); int acct(const char *); int add_profil(char *, size_t, unsigned long, unsigned int); void endusershell(void); int execvP(const char *, const char *, char * const *); char *fflagstostr(unsigned long); int getdomainname(char *, int); int getgrouplist(const char *, int, int *, int *); int gethostuuid(uuid_t, const struct timespec *) __attribute__((availability(macosx,introduced=10.5))); mode_t getmode(const void *, mode_t); int getpeereid(int, uid_t *, gid_t *); int getsgroups_np(int *, uuid_t); char *getusershell(void); int getwgroups_np(int *, uuid_t); int initgroups(const char *, int); int iruserok(unsigned long, int, const char *, const char *); int iruserok_sa(const void *, int, int, const char *, const char *); int issetugid(void); char *mkdtemp(char *); int mknod(const char *, mode_t, dev_t); int mkpath_np(const char *path, mode_t omode) __attribute__((availability(macosx,introduced=10.8))); int mkstemp(char *); int mkstemps(char *, int); char *mktemp(char *); int nfssvc(int, void *); int profil(char *, size_t, unsigned long, unsigned int); int pthread_setugid_np(uid_t, gid_t); int pthread_getugid_np( uid_t *, gid_t *); int rcmd(char **, int, const char *, const char *, const char *, int *); int rcmd_af(char **, int, const char *, const char *, const char *, int *, int); int reboot(int); int revoke(const char *); int rresvport(int *); int rresvport_af(int *, int); int ruserok(const char *, int, const char *, const char *); int setdomainname(const char *, int); int setgroups(int, const gid_t *); void sethostid(long); int sethostname(const char *, int); void setkey(const char *) __asm("_" "setkey" ); int setlogin(const char *); void *setmode(const char *) __asm("_" "setmode" ); int setrgid(gid_t); int setruid(uid_t); int setsgroups_np(int, const uuid_t); void setusershell(void); int setwgroups_np(int, const uuid_t); int strtofflags(char **, unsigned long *, unsigned long *); int swapon(const char *); int syscall(int, ...); int ttyslot(void); int undelete(const char *); int unwhiteout(const char *); void *valloc(size_t); extern char *suboptarg; int getsubopt(char **, char * const *, char **); int fgetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int fsetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int getattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "getattrlist" ); int setattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "setattrlist" ); int exchangedata(const char*,const char*,unsigned int); int getdirentriesattr(int,void*,void*,size_t,unsigned int*,unsigned int*,unsigned int*,unsigned int); # 763 "/usr/include/unistd.h" 3 4 struct fssearchblock; struct searchstate; int searchfs(const char *, struct fssearchblock *, unsigned long *, unsigned int, unsigned int, struct searchstate *); int fsctl(const char *,unsigned long,void*,unsigned int); int ffsctl(int,unsigned long,void*,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int fsync_volume_np(int, int) __attribute__((availability(macosx,introduced=10.8))); int sync_volume_np(const char *, int) __attribute__((availability(macosx,introduced=10.8))); extern int optreset; # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 66 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 68 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stdint.h" 1 3 4 # 33 "/usr/bin/../lib/clang/5.0/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 34 "/usr/bin/../lib/clang/5.0/include/stdint.h" 2 3 4 # 69 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 71 "/usr/include/netinet/in.h" 2 3 4 typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 80 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 114 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; # 135 "/usr/include/sys/types.h" 3 4 typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 106 "/usr/include/sys/socket.h" 3 4 typedef __uint8_t sa_family_t; typedef __darwin_socklen_t socklen_t; # 131 "/usr/include/sys/socket.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 220 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 238 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 326 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 339 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 359 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 469 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 509 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 599 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * restrict, socklen_t * restrict); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) __attribute__((availability(macosx,introduced=10.5))); int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 88 "/usr/include/netinet/in.h" 2 3 4 # 307 "/usr/include/netinet/in.h" 3 4 struct in_addr { in_addr_t s_addr; }; # 380 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { __uint8_t sin_len; sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; char sin_zero[8]; }; # 398 "/usr/include/netinet/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; # 506 "/usr/include/netinet/in.h" 3 4 struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; #pragma pack(4) struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_sourceaddr; struct in_addr imr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; # 554 "/usr/include/netinet/in.h" 3 4 struct __msfilterreq { uint32_t msfr_ifindex; uint32_t msfr_fmode; uint32_t msfr_nsrcs; uint32_t __msfr_align; struct sockaddr_storage msfr_group; struct sockaddr_storage *msfr_srcs; }; #pragma pack() struct sockaddr; int setipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t, uint32_t, struct in_addr *) __attribute__((availability(macosx,introduced=10.7))); int getipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t *, uint32_t *, struct in_addr *) __attribute__((availability(macosx,introduced=10.7))); int setsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t, uint32_t, struct sockaddr_storage *) __attribute__((availability(macosx,introduced=10.7))); int getsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t *, uint32_t *, struct sockaddr_storage *) __attribute__((availability(macosx,introduced=10.7))); # 617 "/usr/include/netinet/in.h" 3 4 struct in_pktinfo { unsigned int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 661 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/netinet6/in6.h" 1 3 4 # 158 "/usr/include/netinet6/in6.h" 3 4 struct in6_addr { union { __uint8_t __u6_addr8[16]; __uint16_t __u6_addr16[8]; __uint32_t __u6_addr32[4]; } __u6_addr; }; # 176 "/usr/include/netinet6/in6.h" 3 4 struct sockaddr_in6 { __uint8_t sin6_len; sa_family_t sin6_family; in_port_t sin6_port; __uint32_t sin6_flowinfo; struct in6_addr sin6_addr; __uint32_t sin6_scope_id; }; # 218 "/usr/include/netinet6/in6.h" 3 4 extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; extern const struct in6_addr in6addr_nodelocal_allnodes; extern const struct in6_addr in6addr_linklocal_allnodes; extern const struct in6_addr in6addr_linklocal_allrouters; extern const struct in6_addr in6addr_linklocal_allv2routers; # 526 "/usr/include/netinet6/in6.h" 3 4 struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 622 "/usr/include/netinet6/in6.h" 3 4 struct cmsghdr; extern int inet6_option_space(int); extern int inet6_option_init(void *, struct cmsghdr **, int); extern int inet6_option_append(struct cmsghdr *, const __uint8_t *, int, int); extern __uint8_t *inet6_option_alloc(struct cmsghdr *, int, int, int); extern int inet6_option_next(const struct cmsghdr *, __uint8_t **); extern int inet6_option_find(const struct cmsghdr *, __uint8_t **, int); extern size_t inet6_rthdr_space(int, int); extern struct cmsghdr *inet6_rthdr_init(void *, int); extern int inet6_rthdr_add(struct cmsghdr *, const struct in6_addr *, unsigned int); extern int inet6_rthdr_lasthop(struct cmsghdr *, unsigned int); extern int inet6_rthdr_segments(const struct cmsghdr *); extern struct in6_addr *inet6_rthdr_getaddr(struct cmsghdr *, int); extern int inet6_rthdr_getflags(const struct cmsghdr *, int); extern int inet6_opt_init(void *, socklen_t); extern int inet6_opt_append(void *, socklen_t, int, __uint8_t, socklen_t, __uint8_t, void **); extern int inet6_opt_finish(void *, socklen_t, int); extern int inet6_opt_set_val(void *, int, void *, socklen_t); extern int inet6_opt_next(void *, socklen_t, int, __uint8_t *, socklen_t *, void **); extern int inet6_opt_find(void *, socklen_t, int, __uint8_t, socklen_t *, void **); extern int inet6_opt_get_val(void *, int, void *, socklen_t); extern socklen_t inet6_rth_space(int, int); extern void *inet6_rth_init(void *, socklen_t, int, int); extern int inet6_rth_add(void *, const struct in6_addr *); extern int inet6_rth_reverse(const void *, void *); extern int inet6_rth_segments(const void *); extern struct in6_addr *inet6_rth_getaddr(const void *, int); extern void addrsel_policy_init(void); # 662 "/usr/include/netinet/in.h" 2 3 4 int bindresvport(int, struct sockaddr_in *); struct sockaddr; int bindresvport_sa(int, struct sockaddr *); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c:4:56: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_SIZE'; did you mean 'getconf_LEVEL1_DCACHE_SIZE'? long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } ^~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_SIZE /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_SIZE' declared here long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c:4:56: warning: incompatible pointer to integer conversion passing 'long ()' to parameter of type 'int' [-Wint-conversion] long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/unistd.h:512:18: note: passing argument to parameter here long sysconf(int); ^ 1 warning and 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:78) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:78) Check for 8-bit clean memcmp All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for function vprintf sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: warning: incompatible redeclaration of library function 'vprintf' [-Wincompatible-library-redeclaration] char vprintf(); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: note: 'vprintf' is a builtin with type 'int (const char *, __va_list_tag *)' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: ================================================================================ TEST checkVFPrintf from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:132) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:132) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for function vfprintf sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: warning: incompatible redeclaration of library function 'vfprintf' [-Wincompatible-library-redeclaration] char vfprintf(); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: note: 'vfprintf' is a builtin with type 'int ()' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vfprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vfprintf) || defined (__stub___vfprintf) choke me #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_VFPRINTF" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: ================================================================================ TEST checkVSNPrintf from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:139) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:139) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for function _vsnprintf sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) choke me #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__vsnprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__vsnprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) choke me #else _vsnprintf(); #endif ; return 0; } Checking for function vsnprintf sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: warning: incompatible redeclaration of library function 'vsnprintf' [-Wincompatible-library-redeclaration] char vsnprintf(); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: note: 'vsnprintf' is a builtin with type 'int (char *, unsigned long, const char *, __va_list_tag *)' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) choke me #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_VSNPRINTF" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: ================================================================================ TEST checkNanosleep from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:183) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:183) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:159) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:159) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:169) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:169) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:175) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:175) Checks whether the variable argument list functionality is working sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char rand(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_rand) || defined (__stub___rand) choke me #else rand(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getdomainname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getdomainname) || defined (__stub___getdomainname) choke me #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char realpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_realpath) || defined (__stub___realpath) choke me #else realpath(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlsym sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlsym(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlsym) || defined (__stub___dlsym) choke me #else dlsym(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_DLSYM" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char uname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_uname) || defined (__stub___uname) choke me #else uname(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sleep) || defined (__stub___sleep) choke me #else sleep(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_lseek) || defined (__stub___lseek) choke me #else lseek(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function usleep sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char usleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_usleep) || defined (__stub___usleep) choke me #else usleep(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_USLEEP" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__intel_fast_memset", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__intel_fast_memset", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlclose sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlclose(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlclose) || defined (__stub___dlclose) choke me #else dlclose(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_DLCLOSE" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostname) || defined (__stub___gethostname) choke me #else gethostname(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char clock(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_clock) || defined (__stub___clock) choke me #else clock(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function get_nprocs sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char get_nprocs(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) choke me #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_get_nprocs", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_get_nprocs", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char get_nprocs(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) choke me #else get_nprocs(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_access) || defined (__stub___access) choke me #else access(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlerror(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlerror) || defined (__stub___dlerror) choke me #else dlerror(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char mkstemp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_mkstemp) || defined (__stub___mkstemp) choke me #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_fork) || defined (__stub___fork) choke me #else fork(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpagesize) || defined (__stub___getpagesize) choke me #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memalign(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memalign) || defined (__stub___memalign) choke me #else memalign(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memalign(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memalign) || defined (__stub___memalign) choke me #else memalign(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostbyname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) choke me #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gettimeofday(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) choke me #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char readlink(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_readlink) || defined (__stub___readlink) choke me #else readlink(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigaction(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigaction) || defined (__stub___sigaction) choke me #else sigaction(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function strcasecmp sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char strcasecmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) choke me #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_STRCASECMP" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlopen sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlopen(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlopen) || defined (__stub___dlopen) choke me #else dlopen(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_DLOPEN" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char drand48(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_drand48) || defined (__stub___drand48) choke me #else drand48(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char socket(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_socket) || defined (__stub___socket) choke me #else socket(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: warning: incompatible redeclaration of library function 'memmove' [-Wincompatible-library-redeclaration] char memmove(); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:6: note: 'memmove' is a builtin with type 'void *(void *, const void *, unsigned long)' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_signal) || defined (__stub___signal) choke me #else signal(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char popen(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_popen) || defined (__stub___popen) choke me #else popen(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getrusage(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getrusage) || defined (__stub___getrusage) choke me #else getrusage(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char times(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_times) || defined (__stub___times) choke me #else times(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__intel_fast_memcpy", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__intel_fast_memcpy", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char time(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_time) || defined (__stub___time) choke me #else time(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sysctlbyname sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysctlbyname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) choke me #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_SYSCTLBYNAME" to "1" ================================================================================ TEST check from config.functions(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' is invalid in C99 [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize/conftest.c:58:2: error: expected '}' } ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 1 warning and 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link Defined "USE_BYTES_FOR_SIZE" to "1" output from getrusage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^ 1 error generated. ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check_siginfo_t from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:11: warning: unused variable 'a' [-Wunused-variable] siginfo_t a;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /usr/include/i386/_types.h:46:20: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double complex x; x = I; ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:115) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:115) Check for complex numbers in namespace std Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:136) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:136) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.F sh: Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:148) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:148) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.F:3.16: d = dreal(3.0) 1 Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4) } Source: program main double precision d d = dreal(3.0) end Compile failed inside link Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:156) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:156) Checks for working const, and if not found defines it to empty string sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:212) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:212) If the machine is big endian, defines WORDS_BIGENDIAN sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:11:3: error: use of undeclared identifier 'not' not big endian ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:316) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:316) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/types.py:362) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:362) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available sh: uname -s Executing: uname -s sh: Darwin ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function socket in library ['socket', 'nsl'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lsocket -lnsl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lsocket -lnsl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lsocket -lnsl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function handle_sigfpes in library ['fpe'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lfpe -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lfpe -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lfpe -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function socket in library ['socket', 'nsl'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lsocket -lnsl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lsocket -lnsl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lsocket -lnsl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function handle_sigfpes in library ['fpe'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lfpe -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lfpe -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lfpe -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:224) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:224) Check for sin() in libm, the math library Checking for function sin in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); int main() { double x = 0,y; y = sin(x); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Checking for function floor in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double floor(double); int main() { double x = 0,y; y = floor(x); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Checking for function log10 in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log10(double); int main() { double x = 0,y; y = log10(x); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Checking for function pow in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double pow(double, double); int main() { double x = 0,y ; y = pow(x, x); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:240) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:240) Check for erf() in libm, the math library Checking for function erf in library [] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); int main() { double x = 0,y; y = erf(x); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:249) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:249) Check for tgama() in libm, the math library Checking for function tgamma in library [] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); int main() { double x = 0,y; y = tgamma(x); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:258) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:258) Checks if can be used with FE_DFL_ENV Checking for function fesetenv in library [] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { fesetenv(FE_DFL_ENV);; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkCompression from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:266) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:266) Check for libz, the compression library Checking for function compress in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_compress", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_compress", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Popping language C Checking for function compress in library ['z'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lz -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lz -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBZ" to "1" Popping language C Checking for function uncompress in library ['z'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lz -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lz -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:287) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:287) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for function clock_gettime in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:7:21: warning: implicit declaration of function 'clock_gettime' is invalid in C99 [-Wimplicit-function-declaration] struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:7:35: error: use of undeclared identifier 'CLOCK_REALTIME' struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; ^ 1 warning and 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; return 0; } Compile failed inside link Popping language C Checking for function clock_gettime in library ['rt'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:7:21: warning: implicit declaration of function 'clock_gettime' is invalid in C99 [-Wimplicit-function-declaration] struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:7:35: error: use of undeclared identifier 'CLOCK_REALTIME' struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; ^ 1 warning and 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:303) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:303) Check for the header and libraries necessary for dynamic library manipulation Checking for function dlopen in library ['dl'] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h sh: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: clang -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 37 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 38 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stdbool.h" 1 3 4 # 41 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/AvailabilityMacros.h" 1 3 4 # 42 "/usr/include/dlfcn.h" 2 3 4 typedef struct dl_info { const char *dli_fname; void *dli_fbase; const char *dli_sname; void *dli_saddr; } Dl_info; extern int dladdr(const void *, Dl_info *); extern int dlclose(void * __handle); extern char * dlerror(void); extern void * dlopen(const char * __path, int __mode); extern void * dlsym(void * __handle, const char * __symbol); extern _Bool dlopen_preflight(const char* __path) ; # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureTimers from PETSc.utilities.timer(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for function MPI_CRAY_barrier in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_MPI_CRAY_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_MPI_CRAY_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:35) Checks for limits All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:10:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:10:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:10:7: warning: if statement has empty body [-Wempty-body] if (d); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:10:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/missing.py:88) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:88) sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c:14:5: warning: unused variable 'err' [-Wunused-variable] int err = getdomainname(test,10); ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.cc:14:5: warning: unused variable 'err' [-Wunused-variable] int err = getdomainname(test,10); ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/missing.py:110) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:110) sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language Cxx sh: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.cc Executing: clang++ -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language CXX Popping language CXX sh: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang++ -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/missing.py:134) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:134) ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/scalarTypes.py:37) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_ISNAN" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_ISINF" to "1" sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c:6:24: warning: implicit declaration of function '_isnan' is invalid in C99 [-Wimplicit-function-declaration] double b = 2.0;int a = _isnan(b); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable 'a' [-Wunused-variable] double b = 2.0;int a = _isnan(b); ^ 2 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__isnan", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__isnan", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c:6:24: warning: implicit declaration of function '_finite' is invalid in C99 [-Wimplicit-function-declaration] double b = 2.0;int a = _finite(b); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable 'a' [-Wunused-variable] double b = 2.0;int a = _finite(b); ^ 2 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__finite", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__finite", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/scalarTypes.py:73) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:73) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for function bgl_perfctr_void in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C Checking for function ADIOI_BGL_Open in library [''] [] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); int main() { ADIOI_BGL_Open() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); int main() { ADIOI_BGL_Open() ; return 0; } Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/libraryOptions.py:92) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:92) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for function in library [''] [] Pushing language FC sh: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F Executing: gfortran -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F sh: Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC sh: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: gfortran -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for function get_command_argument_ in library [''] ['-L/usr/lib/clang/5.0/lib/darwin', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); int main() { get_command_argument_() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_get_command_argument_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_get_command_argument_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); int main() { get_command_argument_() ; return 0; } Popping language C Checking for function getarg_ in library [''] ['-L/usr/lib/clang/5.0/lib/darwin', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); int main() { getarg_() ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_getarg_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_getarg_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); int main() { getarg_() ; return 0; } Popping language C Checking for function ipxfargc_ sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ipxfargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ipxfargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_f90_unix_MP_iargc", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_f90_unix_MP_iargc", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function iargc_ sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_iargc_) || defined (__stub___iargc_) choke me #else iargc_(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_iargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_iargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_iargc_) || defined (__stub___iargc_) choke me #else iargc_(); #endif ; return 0; } Checking for function GETARG@16 sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:10:12: error: expected ';' after top level declarator char GETARG@16(); ^ ; /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:17:27: error: missing ')' after 'defined' #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:17:13: note: to match this '(' #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:20:7: error: expected ';' after expression GETARG@16(); ^ ; /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:20:7: error: expected expression /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c:20:1: warning: expression result unused [-Wunused-value] GETARG@16(); ^~~~~~ 1 warning and 4 errors generated. } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for function _gfortran_iargc sh: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c Executing: clang -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C sh: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: clang -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions/conftest.o -ldl -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -L/usr/lib/clang/5.0/lib/darwin -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Defined "HAVE__GFORTRAN_IARGC" to "1" Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C ================================================================================ TEST configureMake from config.packages.make(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/make.py:61) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:61) Check for user specified make - or gmake, make Checking for program /opt/local/bin/gmake...found Defined make macro "MAKE" to "/opt/local/bin/gmake" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/make.py:79) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:79) Check for GNU make Checking for program /opt/local/bin/strings...not found Checking for program /opt/local/sbin/strings...not found Checking for program /Users/barrysmith/Src/petsc/bin/strings...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/strings...not found Checking for program /Users/barrysmith/bin/strings...not found Checking for program /usr/bin/strings...found sh: /usr/bin/strings /opt/local/bin/gmake Executing: /usr/bin/strings /opt/local/bin/gmake sh: touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' attempt to use unsupported feature: `%s' ! 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$@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. unterminated variable reference warning: undefined variable `%.*s' Recursive variable `%s' references itself (eventually) name %s: Field '%s' not cached: %s hname stem # Files # files hash-table stats: | %s %04d-%02d-%02d %02d:%02d:%02d .%09d # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. question_flag file.c # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Invalid value in `command_state' member! Current time %s: Timestamp out of range; substituting %s *** Deleting intermediate file `%s' Removing intermediate files... unlink: Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *name != '\0' strcache_iscached (name) .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL print_file enter_file lookup_file undefined recursive simple insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' file environment override command line override automatic addprefix basename suffix %s:%lu: pipe fork Cleaning up temporary batch file %s %s: '%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 Internal error: func_error: '%s' filter unterminated call to function `%s': missing `%c' abspath addsuffix notdir subst filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. %s: Command not found SHELL %s: Shell program not found execvp: INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). [%s] Error %d (ignored) *** [%s] Error %d (core dumped) *** [%s] %s%s bash rksh dash ap <= end job.c %s (line %d) Bad shell context (!unixy && !batch_mode_shell) $(SHELL) $(.SHELLFLAGS) $(IFS) vfork cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) (remote) Putting child %p (%s) PID %s%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. Invoking recipe from %s:%lu to update target `%s'. Invoking builtin recipe to update target `%s'. construct_command_argv_internal break case continue exec exit export login logout read readonly shift switch test times trap ulimit umask unset while start_waiting_job %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name MFLAGS MAKEFLAGS $(MAKEOVERRIDES) $(-*-command-variables-*-) $(-*-eval-flags-*-) MAKECMDGOALS the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... Options: This program built for %s This program built for %s (%s) Report bugs to /opt/local/share/locale make getcwd .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine archives jobserver check-symlink .FEATURES MAKE_RESTARTS unknown debug level specification `%s' MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR /var/tmp/ fopen (temporary file) fwrite (temporary file) .DEFAULT -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u BOGUS_UPDATE_STATUS main.c unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. main always-make directory basic debug environment-overrides help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version verbosity print-directory no-print-directory what-if warn-undefined-variables quiet stop new-file assume-new assume-old max-load dry-run recon makefile -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s: %s[%u]: write error: %s write error %s%s: %s $(HOME) HOME .INCLUDE_DIRS warning: NUL character seen; rest of line ignored private define undefine virtual memory exhausted prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional empty variable name extraneous text after `define' directive missing `endef', unterminated `define' endef extraneous text after `endef' directive v != NULL read.c invalid syntax in conditional unexport vpath include -include sinclude %s: %s recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s *p2 != '\0' v != 0 Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no `%%' .DEFAULT_GOAL missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /opt/local/include /usr/gnu/include /usr/local/include /usr/include eval record_target_var GNUmakefile Makefile stat: lstat: readlink: %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s %.2g Warning: File `%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 remake.c Using default commands for `%s'. Nothing to be done for `%s'. `%s' is up to date. /lib /usr/lib /opt/local/lib update_file_1 # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u r->suffixes[i] != NULL rule.c r->suffixes[0] != NULL (%.o) create_pattern_rule install_pattern_rule %s # of strings in strcache: %d / lookups = %lu / hits = %lu %s # of strcache buffers: %d (* %d B/buffer = %d B) %s strcache used: total = %d (%d) / max = %d / min = %d / avg = %d %s strcache free: total = %d (%d) / max = %d / min = %d / avg = %d # strcache hash-table stats: best->bytesfree > len strcache.c add_string default environment environment under -e `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # %u pattern-specific variable values # No pattern-specific variable values. .RECIPEPREFIX current_variable_set_list->next != NULL variable.c %s%s%s MAKE_VERSION MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) .VARIABLES pop_variable_scope 3.82 x86_64-apple-darwin10.8.0 # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: $(strip $(VPATH)) $(strip $(GPATH)) Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% can't allocate %lu bytes for hash table: memory exhausted next != NULL glob.c glob alnum alpha blank cntrl digit graph lower print punct space upper xdigit .out .a .ln .o .c .cc .C .cpp .p .f .F .m .r .y .l .ym .yl .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh #;"*?[]&|<>(){}$`^~! Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "OMAKE " to "/opt/local/bin/gmake --print-directory" Defined make macro "OMAKE_NOPRINTDIR " to "/opt/local/bin/gmake --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:746) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:746) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI sh: uname -s Executing: uname -s sh: Darwin Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.0.4-106 Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.0.4-106 Pushing language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI Popping language C Pushing language Cxx Popping language Cxx Pushing language FC sh: gfortran -v Executing: gfortran -v sh: Popping language FC sh: uname -s Executing: uname -s sh: Darwin Have to rebuild MPI, /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/args.petsc != /Users/barrysmith/Src/PETSc/arch-clang/conf/MPI =============================================================================== Running configure on MPICH; this may take several minutes =============================================================================== sh: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && ./configure --prefix=/Users/barrysmith/Src/PETSc/arch-clang MAKE=/opt/local/bin/gmake CC="clang" CFLAGS=" -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " CXX="clang++" CXXFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC " FC="gfortran" FCFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " F77="gfortran" FFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " --enable-shared --enable-sharedlibs=gcc-osx --with-device=ch3:sock --without-mpe --with-pm=hydra --enable-g=meminit --enable-fast Executing: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && ./configure --prefix=/Users/barrysmith/Src/PETSc/arch-clang MAKE=/opt/local/bin/gmake CC="clang" CFLAGS=" -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " CXX="clang++" CXXFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC " FC="gfortran" FCFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " F77="gfortran" FFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " --enable-shared --enable-sharedlibs=gcc-osx --with-device=ch3:sock --without-mpe --with-pm=hydra --enable-g=meminit --enable-fast sh: Configuring MPICH version 3.0.4 with '--prefix=/Users/barrysmith/Src/PETSc/arch-clang' 'MAKE=/opt/local/bin/gmake' 'CC=clang' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 ' 'CXX=clang++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' Running on system: Darwin anlextwls002-169.wl.anl-external.org 12.5.0 Darwin Kernel Version 12.5.0: Sun Sep 29 13:33:47 PDT 2013; root:xnu-2050.48.12~1/RELEASE_X86_64 x86_64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking whether clang and cc understand -c and -o together... yes checking how to run the C preprocessor... clang -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... confdb/install-sh -c -d checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... GNU checking whether /opt/local/bin/gmake supports nested variables... yes checking dependency style of clang... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-apple-darwin12.5.0 checking host system type... x86_64-apple-darwin12.5.0 checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.5.0 file names to x86_64-apple-darwin12.5.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.5.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from clang object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /opt/local/bin/gmake supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking dependency style of clang++... gcc3 checking how to run the C++ preprocessor... clang++ -E checking for ld used by clang++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes checking for clang++ option to produce PIC... -fno-common -DPIC checking if clang++ PIC flag -fno-common -DPIC works... yes checking if clang++ static flag -static works... no checking if clang++ supports -c -o file.o... yes checking if clang++ supports -c -o file.o... (cached) yes checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking for getpagesize... yes configure: RUNNING PREREQ FOR ch3:sock configure: ===== configuring src/mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/barrysmith/Src/PETSc/arch-clang' 'MAKE=/opt/local/bin/gmake' 'CC=clang' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 ' 'CXX=clang++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... confdb/install-sh -c -d checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking dependency style of clang... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-apple-darwin12.5.0 checking host system type... x86_64-apple-darwin12.5.0 checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.5.0 file names to x86_64-apple-darwin12.5.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.5.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from clang object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... clang -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: include/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines config.status: include/mplconfig.h is unchanged configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/barrysmith/Src/PETSc/arch-clang' --with-atomic-primitives=auto_allow_emulation 'MAKE=/opt/local/bin/gmake' 'CC=clang' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 ' 'CXX=clang++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... confdb/install-sh -c -d checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... GNU checking for gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking dependency style of clang... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-apple-darwin12.5.0 checking host system type... x86_64-apple-darwin12.5.0 checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.5.0 file names to x86_64-apple-darwin12.5.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.5.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from clang object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... clang -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking for gcc... (cached) clang checking whether we are using the GNU C compiler... (cached) yes checking whether clang accepts -g... (cached) yes checking for clang option to accept ISO C89... (cached) none needed checking dependency style of clang... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... no checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sched_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: src/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines config.status: src/opa_config.h is unchanged configure: ===== done with src/openpa configure ===== sourcing /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... no checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -lgfortran -lquadmath -lm checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether clang links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether the C++ compiler clang++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 2 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /opt/local/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether clang supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes checking for C type matching Fortran real... float checking for C type matching Fortran double... double checking for C type matching Fortran integer... int checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking size of MPIR_Bsend_data_t... 96 checking for gcc __asm__ and pentium cmpxchgl instruction... no checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes checking for gcc __asm__ and IA64 xchg4 instruction... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking endian.h usability... no checking endian.h presence... no checking for endian.h... no checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for mach_absolute_time... yes checking for gettimeofday... yes checking for mach_absolute_time... (cached) yes checking for mach_timebase_info... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... no checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... __thread checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking for sched_setaffinity... no checking for sched_getaffinity... no checking for bindprocessor... no checking for thread_policy_set... yes checking whether thread affinity macros defined... no configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... yes checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:sock checking for net/if.h... yes checking for netdb.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... yes checking sys/sockio.h presence... yes checking for sys/sockio.h... yes checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking for netinet/in.h... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock checking for strerror... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock/poll checking for poll... yes checking for assert.h... (cached) yes checking for errno.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for limits.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking for sys/param.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for unistd.h... 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(cached) no checking whether we can use struct ifconf... yes configure: ===== configuring src/mpid/common/sock ===== configure: ===== done with src/mpid/common/sock configure ===== configure: ===== configuring src/mpi/romio ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/barrysmith/Src/PETSc/arch-clang' 'MAKE=/opt/local/bin/gmake' 'CC=clang' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -DNDEBUG -DNVALGRIND -O2' 'CXX=clang++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -DNDEBUG -DNVALGRIND -O2' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -O2' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -O2' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /opt/local/bin/gmake... 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(cached) yes checking for large file defines... none setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to clang setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpif77 setting CFLAGS to -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -DNDEBUG -DNVALGRIND -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: adio/include/romioconf.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/barrysmith/Src/PETSc/arch-clang' 'MAKE=/opt/local/bin/gmake' 'CC=clang' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -DNDEBUG -DNVALGRIND -O2' 'CXX=clang++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -DNDEBUG -DNVALGRIND -O2' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -O2' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -O2' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-apple-darwin12.5.0 checking host system type... x86_64-apple-darwin12.5.0 checking target system type... x86_64-apple-darwin12.5.0 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking how to run the C preprocessor... clang -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /usr/bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... 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(cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... yes checking mach/mach_host.h presence... yes checking for mach/mach_host.h... yes checking mach/mach_init.h usability... yes checking mach/mach_init.h presence... yes checking for mach/mach_init.h... yes checking for host_info... yes checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... yes checking whether HW_NCPU is declared... yes checking for sysctl... yes checking for sysctlbyname... yes checking for pthread_t... yes checking whether function sched_setaffinity is declared... no checking for working CPU_SET... no checking for working CPU_SET_S... no checking for working _syscall3... no checking for KERRIGHED... no checking for lib... no checking for bash... /bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... yes checking whether function fls is declared... yes checking for flsl... yes checking whether function flsl is declared... yes checking for clz... no checking for clzl... no checking for openat... no checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking for getpagesize... yes checking for memalign... no checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... no checking whether pthread_getaffinity_np is declared... no checking for sched_setaffinity... no checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking numaif.h usability... no checking numaif.h presence... no checking for numaif.h... no checking for PCIACCESS... no checking for PCIUTILS... no checking pci/pci.h usability... no checking pci/pci.h presence... no checking for pci/pci.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking X11/Xlib.h usability... no checking X11/Xlib.h presence... no checking for X11/Xlib.h... no checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... yes checking for xmlNewDoc... yes checking for final LIBXML2 support... yes checking for cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic custom xml_nolibxml darwin xml_libxml x86 checking components to build as plugins... checking available processor topology libraries... hwloc checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... meminit checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/src/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: tools/topo/hwloc/hwloc/include/private/autogen/config.h is unchanged config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 40 checking for BSD/POSIX style global symbol lister... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... no! link failure configure: creating ./config.lt config.lt: creating libtool checking if the C compiler accepts -Wl,-flat_namespace... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/binding/f90/mpif90model.h config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/include/mpichtimer.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f77/setbot.c config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/binding/f90/mpi_base.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90.sh config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/windev/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/barrysmith/Src/PETSc/arch-clang' 'MAKE=/opt/local/bin/gmake' 'CC=clang' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 ' 'CXX=clang++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /opt/local/bin/gmake supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /opt/local/bin/gmake... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking dependency style of clang... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (ar) interface... ar checking for grep that handles long lines and -e... /usr/bin/grep checking for fgrep... /usr/bin/grep -F checking how to run the C preprocessor... clang -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... none required checking for library containing pthread_barrier_init... no checking for pthread_create... yes checking for pthread_yield... no checking for pthread_barrier_init... no checking for pthread_barrier_wait... no checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-apple-darwin12.5.0 checking host system type... x86_64-apple-darwin12.5.0 checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -lgfortran -lquadmath -lm checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking dependency style of clang++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /opt/local/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/spawn/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/errhan/Makefile config.status: creating errors/f77/errhan/addsize.h config.status: creating errors/f77/errhan/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/errhan/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed. =============================================================================== Running make on MPICH; this may take several minutes =============================================================================== sh: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake clean Executing: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake clean sh: Making clean in src/mpl gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making clean in src/openpa gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making clean in src gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' Making clean in test gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' rm -rf .libs _libs rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making clean in src/mpi/romio gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' rm -rf .libs _libs rm -rf adio/ad_bg/.libs adio/ad_bg/_libs rm -rf adio/ad_bgl/.libs adio/ad_bgl/_libs rm -rf adio/ad_bglockless/.libs adio/ad_bglockless/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la libpromio.la" || rm -f libromio.la libpromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_bg/*.o rm -f adio/ad_bg/*.lo rm -f adio/ad_bgl/*.o rm -f adio/ad_bgl/*.lo rm -f adio/ad_bglockless/*.o rm -f adio/ad_bglockless/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' Making clean in src/pm/hydra gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making clean in ../../mpl gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making clean in tools/topo/hwloc/hwloc gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in src gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making clean in include gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making clean in . gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' rm -f src/env/mpichversion test -z "src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod" || rm -f src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod test -z "lib/libmpich.la lib/libpmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la" || rm -f lib/libmpich.la lib/libpmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/f77/.libs src/binding/f77/_libs rm -rf src/binding/f90/.libs src/binding/f90/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mx/.libs src/mpid/ch3/channels/nemesis/netmod/mx/_libs rm 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src/mpid/pamid/src/coll/alltoallv/_libs rm -rf src/mpid/pamid/src/coll/barrier/.libs src/mpid/pamid/src/coll/barrier/_libs rm -rf src/mpid/pamid/src/coll/bcast/.libs src/mpid/pamid/src/coll/bcast/_libs rm -rf src/mpid/pamid/src/coll/gather/.libs src/mpid/pamid/src/coll/gather/_libs rm -rf src/mpid/pamid/src/coll/gatherv/.libs src/mpid/pamid/src/coll/gatherv/_libs rm -rf src/mpid/pamid/src/coll/reduce/.libs src/mpid/pamid/src/coll/reduce/_libs rm -rf src/mpid/pamid/src/coll/scan/.libs src/mpid/pamid/src/coll/scan/_libs rm -rf src/mpid/pamid/src/coll/scatter/.libs src/mpid/pamid/src/coll/scatter/_libs rm -rf src/mpid/pamid/src/coll/scatterv/.libs src/mpid/pamid/src/coll/scatterv/_libs rm -rf src/mpid/pamid/src/comm/.libs src/mpid/pamid/src/comm/_libs rm -rf src/mpid/pamid/src/dyntask/.libs src/mpid/pamid/src/dyntask/_libs rm -rf src/mpid/pamid/src/misc/.libs src/mpid/pamid/src/misc/_libs rm -rf src/mpid/pamid/src/mpix/.libs src/mpid/pamid/src/mpix/_libs rm -rf src/mpid/pamid/src/onesided/.libs src/mpid/pamid/src/onesided/_libs rm -rf src/mpid/pamid/src/pamix/.libs src/mpid/pamid/src/pamix/_libs rm -rf src/mpid/pamid/src/pt2pt/.libs src/mpid/pamid/src/pt2pt/_libs rm -rf src/mpid/pamid/src/pt2pt/persistent/.libs src/mpid/pamid/src/pt2pt/persistent/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/mpd/.libs src/nameserv/mpd/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pm/smpd/.libs src/pm/smpd/_libs rm -rf src/pm/smpd/sock/poll/.libs src/pm/smpd/sock/poll/_libs rm -rf src/pmi/pmi2/poe/.libs src/pmi/pmi2/poe/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/pmi/smpd/.libs src/pmi/smpd/_libs rm -rf src/util/dbg/.libs src/util/dbg/_libs rm -rf src/util/instrm/.libs src/util/instrm/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/msgs/.libs src/util/msgs/_libs rm -rf src/util/other/.libs src/util/other/_libs rm -rf src/util/param/.libs src/util/param/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs rm -rf src/util/thread/.libs src/util/thread/_libs ( cd test && /opt/local/bin/gmake clean ) gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' Making clean in mpi gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' Making clean in util gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/util' rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/util' Making clean in attr gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/attr' Making clean in basic gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/basic' Making clean in datatype gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms" || rm -f blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/datatype' Making clean in coll gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/coll' Making clean in comm gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_info rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/comm' Making clean in errhan gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "adderr commcall errfatal predef_eh" || rm -f adderr commcall errfatal predef_eh rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errhan' Making clean in group gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/group' Making clean in info gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoenv rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/info' Making clean in init gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/init' Making clean in pt2pt gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/pt2pt' Making clean in rma gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example win_info pscw_ordering mutex_bench mutex_bench_shared" || rm -f allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example win_info pscw_ordering mutex_bench mutex_bench_shared rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/rma' Making 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uerrhandf rm -f *.o gmake[6]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77/errhan' gmake[6]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[6]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77' gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77' Making clean in f90 gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90' Making clean in errhan gmake[6]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o gmake[6]: Leaving directory 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*.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/ext' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/spawn' Making clean in io gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/io' Making clean in rma gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/rma' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77' Making clean in f90 gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' Making clean in util gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/util' rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/util' Making clean in timer gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/timer' Making clean in attr gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/attr' Making clean in coll gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/coll' Making clean in datatype gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/datatype' Making clean in pt2pt gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf90 statusesf90 greqf90 mprobef90" || rm -f allpairf90 statusesf90 greqf90 mprobef90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/pt2pt' Making clean in info gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/info' Making clean in comm gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/comm' Making clean in topo gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/topo' Making clean in ext gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/ext' Making clean in init gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/init' Making clean in misc gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/misc' Making clean in f90types gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/f90types' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "createf90types" || rm -f createf90types rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/f90types' Making clean in rma gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/rma' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/spawn' Making clean in io gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/io' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' Making clean in cxx gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' Making clean in util gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/util' rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/util' Making clean in attr gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/attr' Making clean in pt2pt gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/pt2pt' Making clean in init gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/init' Making clean in info gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/info' Making clean in comm gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/comm' Making clean in coll gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx" || rm -f arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/coll' Making clean in datatype gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "packsizex typecntsx typenamex typemiscx" || rm -f packsizex typecntsx typenamex typemiscx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/datatype' Making clean in errhan gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/errhan' Making clean in io gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/io' Making clean in rma gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/rma' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/spawn' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' Making clean in threads gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' Making clean in util gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/util' rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/util' Making clean in pt2pt gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/pt2pt' Making clean in comm gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/comm' Making clean in init gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "initth" || rm -f initth rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/init' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/spawn' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' Making clean in spawn gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/spawn' Making clean in . gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' Making clean in commands gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/commands' Making clean in . gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' rm -f /Users/barrysmith/Src/PETSc/arch-clang/bin/mpic++ test -z "" || rm -f test -z "" || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/f77/*.o rm -f src/binding/f77/*.lo rm -f src/binding/f90/*.o rm -f src/binding/f90/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f 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rm -f src/pm/smpd/*.lo rm -f src/pm/smpd/sock/poll/*.o rm -f src/pm/smpd/sock/poll/*.lo rm -f src/pm/util/*.o rm -f src/pmi/pmi2/poe/*.o rm -f src/pmi/pmi2/poe/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/pmi/smpd/*.o rm -f src/pmi/smpd/*.lo rm -f src/util/dbg/*.o rm -f src/util/dbg/*.lo rm -f src/util/instrm/*.o rm -f src/util/instrm/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/msgs/*.o rm -f src/util/msgs/*.lo rm -f src/util/other/*.o rm -f src/util/other/*.lo rm -f src/util/param/*.o rm -f src/util/param/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f src/util/thread/*.o rm -f src/util/thread/*.lo rm -f *.lo gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' Making clean in examples gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' sh: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake -j 7 all Executing: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake -j 7 all sh: /opt/local/bin/gmake all-recursive gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' Making all in src/mpl gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' CC mplstr.lo CC mpltrmem.lo CC mplenv.lo CCLD libmpl.la gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making all in src/openpa gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making all in src gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' /opt/local/bin/gmake all-am gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' Making all in test gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Nothing to be done for `all'. gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[3]: Nothing to be done for `all-am'. gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making all in src/mpi/romio gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/file_c2f.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_group.lo CC mpi-io/get_extent.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC 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mpi-io/libpromio_la-seek.lo CC mpi-io/libpromio_la-seek_sh.lo CC mpi-io/libpromio_la-set_atom.lo CC mpi-io/libpromio_la-set_info.lo CC mpi-io/libpromio_la-set_size.lo CC mpi-io/libpromio_la-set_view.lo CC mpi-io/libpromio_la-wr_atallb.lo CC mpi-io/libpromio_la-wr_atalle.lo CC mpi-io/libpromio_la-write.lo CC mpi-io/libpromio_la-write_all.lo CC mpi-io/libpromio_la-write_allb.lo CC mpi-io/libpromio_la-write_alle.lo CC mpi-io/libpromio_la-write_at.lo CC mpi-io/libpromio_la-write_atall.lo CC mpi-io/libpromio_la-write_ord.lo CC mpi-io/libpromio_la-write_ordb.lo CC mpi-io/libpromio_la-write_orde.lo CC mpi-io/libpromio_la-write_sh.lo CCLD libromio.la CCLD libpromio.la gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' Making all in src/pm/hydra gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making all in ../../mpl gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' gmake[3]: Nothing to be done for `all'. gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making all in tools/topo/hwloc/hwloc gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in src gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-darwin.lo CC topology-x86.lo CCLD libhwloc_embedded.la gmake[4]: Leaving directory 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src/binding/f77/lib_libpmpich_la-probef.lo CC src/binding/f77/lib_libpmpich_la-cancelf.lo CC src/binding/f77/lib_libpmpich_la-testcancelf.lo CC src/binding/f77/lib_libpmpich_la-send_initf.lo CC src/binding/f77/lib_libpmpich_la-bsend_initf.lo CC src/binding/f77/lib_libpmpich_la-ssend_initf.lo CC src/binding/f77/lib_libpmpich_la-rsend_initf.lo CC src/binding/f77/lib_libpmpich_la-recv_initf.lo CC src/binding/f77/lib_libpmpich_la-startf.lo CC src/binding/f77/lib_libpmpich_la-startallf.lo CC src/binding/f77/lib_libpmpich_la-sendrecvf.lo CC src/binding/f77/lib_libpmpich_la-sndrcvrplf.lo CC src/binding/f77/lib_libpmpich_la-typecontigf.lo CC src/binding/f77/lib_libpmpich_la-type_vectorf.lo CC src/binding/f77/lib_libpmpich_la-type_hvectorf.lo CC src/binding/f77/lib_libpmpich_la-type_indexedf.lo CC src/binding/f77/lib_libpmpich_la-type_hindexedf.lo CC src/binding/f77/lib_libpmpich_la-type_structf.lo CC src/binding/f77/lib_libpmpich_la-type_extentf.lo CC src/binding/f77/lib_libpmpich_la-type_sizef.lo CC src/binding/f77/lib_libpmpich_la-type_ubf.lo CC src/binding/f77/lib_libpmpich_la-type_lbf.lo CC src/binding/f77/lib_libpmpich_la-type_commitf.lo CC src/binding/f77/lib_libpmpich_la-type_freef.lo CC src/binding/f77/lib_libpmpich_la-get_elementsf.lo CC src/binding/f77/lib_libpmpich_la-packf.lo CC src/binding/f77/lib_libpmpich_la-unpackf.lo CC src/binding/f77/lib_libpmpich_la-pack_sizef.lo CC src/binding/f77/lib_libpmpich_la-barrierf.lo CC src/binding/f77/lib_libpmpich_la-bcastf.lo CC src/binding/f77/lib_libpmpich_la-gatherf.lo CC src/binding/f77/lib_libpmpich_la-gathervf.lo CC src/binding/f77/lib_libpmpich_la-scatterf.lo CC src/binding/f77/lib_libpmpich_la-scattervf.lo CC src/binding/f77/lib_libpmpich_la-allgatherf.lo CC src/binding/f77/lib_libpmpich_la-allgathervf.lo CC src/binding/f77/lib_libpmpich_la-alltoallf.lo CC src/binding/f77/lib_libpmpich_la-alltoallvf.lo CC src/binding/f77/lib_libpmpich_la-alltoallwf.lo CC src/binding/f77/lib_libpmpich_la-exscanf.lo CC src/binding/f77/lib_libpmpich_la-reducef.lo CC src/binding/f77/lib_libpmpich_la-op_createf.lo CC src/binding/f77/lib_libpmpich_la-op_freef.lo CC src/binding/f77/lib_libpmpich_la-allreducef.lo CC src/binding/f77/lib_libpmpich_la-redscatf.lo CC src/binding/f77/lib_libpmpich_la-scanf.lo CC src/binding/f77/lib_libpmpich_la-group_sizef.lo CC src/binding/f77/lib_libpmpich_la-group_rankf.lo CC src/binding/f77/lib_libpmpich_la-grouptranksf.lo CC src/binding/f77/lib_libpmpich_la-group_comparef.lo CC src/binding/f77/lib_libpmpich_la-comm_groupf.lo CC src/binding/f77/lib_libpmpich_la-group_unionf.lo CC src/binding/f77/lib_libpmpich_la-groupinterf.lo CC src/binding/f77/lib_libpmpich_la-groupdifff.lo CC src/binding/f77/lib_libpmpich_la-group_inclf.lo CC src/binding/f77/lib_libpmpich_la-group_exclf.lo CC src/binding/f77/lib_libpmpich_la-grouprinclf.lo CC src/binding/f77/lib_libpmpich_la-grouprexclf.lo CC src/binding/f77/lib_libpmpich_la-group_freef.lo CC src/binding/f77/lib_libpmpich_la-comm_sizef.lo CC src/binding/f77/lib_libpmpich_la-comm_rankf.lo CC src/binding/f77/lib_libpmpich_la-comm_comparef.lo CC src/binding/f77/lib_libpmpich_la-comm_dupf.lo CC src/binding/f77/lib_libpmpich_la-comm_dup_with_infof.lo CC src/binding/f77/lib_libpmpich_la-comm_createf.lo CC src/binding/f77/lib_libpmpich_la-comm_splitf.lo CC src/binding/f77/lib_libpmpich_la-comm_freef.lo CC src/binding/f77/lib_libpmpich_la-commtesticf.lo CC src/binding/f77/lib_libpmpich_la-commrsizef.lo CC src/binding/f77/lib_libpmpich_la-commrgroupf.lo CC src/binding/f77/lib_libpmpich_la-iccreatef.lo CC src/binding/f77/lib_libpmpich_la-icmergef.lo CC src/binding/f77/lib_libpmpich_la-keyval_freef.lo CC src/binding/f77/lib_libpmpich_la-attr_putf.lo CC src/binding/f77/lib_libpmpich_la-attr_getf.lo CC src/binding/f77/lib_libpmpich_la-attr_deletef.lo CC src/binding/f77/lib_libpmpich_la-topo_testf.lo CC src/binding/f77/lib_libpmpich_la-cart_createf.lo CC 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src/binding/f77/lib_libpmpich_la-comm_split_typef.lo CC src/binding/f77/lib_libpmpich_la-get_elements_xf.lo CC src/binding/f77/lib_libpmpich_la-status_set_elements_xf.lo CC src/binding/f77/lib_libpmpich_la-type_get_extent_xf.lo CC src/binding/f77/lib_libpmpich_la-type_get_true_extent_xf.lo CC src/binding/f77/lib_libpmpich_la-type_size_xf.lo CC src/binding/f77/lib_libpmpich_la-comm_create_groupf.lo CC src/binding/f77/lib_libpmpich_la-comm_group_failedf.lo CC src/binding/f77/lib_libpmpich_la-comm_remote_group_failedf.lo CC src/binding/f77/lib_libpmpich_la-comm_reenable_anysourcef.lo CC src/binding/f77/lib_libpmpich_la-file_openf.lo CC src/binding/f77/lib_libpmpich_la-file_closef.lo CC src/binding/f77/lib_libpmpich_la-file_deletef.lo CC src/binding/f77/lib_libpmpich_la-file_set_sizef.lo CC src/binding/f77/lib_libpmpich_la-file_preallocatef.lo CC src/binding/f77/lib_libpmpich_la-file_get_sizef.lo CC src/binding/f77/lib_libpmpich_la-file_get_groupf.lo CC src/binding/f77/lib_libpmpich_la-file_get_amodef.lo CC src/binding/f77/lib_libpmpich_la-file_set_infof.lo CC src/binding/f77/lib_libpmpich_la-file_get_infof.lo CC src/binding/f77/lib_libpmpich_la-file_set_viewf.lo CC src/binding/f77/lib_libpmpich_la-file_get_viewf.lo CC src/binding/f77/lib_libpmpich_la-file_read_atf.lo CC src/binding/f77/lib_libpmpich_la-file_read_at_allf.lo CC src/binding/f77/lib_libpmpich_la-file_write_atf.lo CC src/binding/f77/lib_libpmpich_la-file_write_at_allf.lo CC src/binding/f77/lib_libpmpich_la-file_iread_atf.lo CC src/binding/f77/lib_libpmpich_la-file_iwrite_atf.lo CC src/binding/f77/lib_libpmpich_la-file_readf.lo CC src/binding/f77/lib_libpmpich_la-file_read_allf.lo CC src/binding/f77/lib_libpmpich_la-file_writef.lo CC src/binding/f77/lib_libpmpich_la-file_write_allf.lo CC src/binding/f77/lib_libpmpich_la-file_ireadf.lo CC src/binding/f77/lib_libpmpich_la-file_iwritef.lo CC src/binding/f77/lib_libpmpich_la-file_seekf.lo CC src/binding/f77/lib_libpmpich_la-file_get_positionf.lo CC src/binding/f77/lib_libpmpich_la-file_get_byte_offsetf.lo CC src/binding/f77/lib_libpmpich_la-file_read_sharedf.lo CC src/binding/f77/lib_libpmpich_la-file_write_sharedf.lo CC src/binding/f77/lib_libpmpich_la-file_iread_sharedf.lo CC src/binding/f77/lib_libpmpich_la-file_iwrite_sharedf.lo CC src/binding/f77/lib_libpmpich_la-file_read_orderedf.lo CC src/binding/f77/lib_libpmpich_la-file_write_orderedf.lo CC src/binding/f77/lib_libpmpich_la-file_seek_sharedf.lo CC src/binding/f77/lib_libpmpich_la-file_get_position_sharedf.lo CC src/binding/f77/lib_libpmpich_la-file_read_at_all_beginf.lo CC src/binding/f77/lib_libpmpich_la-file_read_at_all_endf.lo CC src/binding/f77/lib_libpmpich_la-file_write_at_all_beginf.lo CC src/binding/f77/lib_libpmpich_la-file_write_at_all_endf.lo CC src/binding/f77/lib_libpmpich_la-file_read_all_beginf.lo CC src/binding/f77/lib_libpmpich_la-file_read_all_endf.lo CC src/binding/f77/lib_libpmpich_la-file_write_all_beginf.lo CC src/binding/f77/lib_libpmpich_la-file_write_all_endf.lo CC src/binding/f77/lib_libpmpich_la-file_read_ordered_beginf.lo CC src/binding/f77/lib_libpmpich_la-file_read_ordered_endf.lo CC src/binding/f77/lib_libpmpich_la-file_write_ordered_beginf.lo CC src/binding/f77/lib_libpmpich_la-file_write_ordered_endf.lo CC src/binding/f77/lib_libpmpich_la-file_get_type_extentf.lo CC src/binding/f77/lib_libpmpich_la-register_datarepf.lo CC src/binding/f77/lib_libpmpich_la-file_set_atomicityf.lo CC src/binding/f77/lib_libpmpich_la-file_get_atomicityf.lo CC src/binding/f77/lib_libpmpich_la-file_syncf.lo CC src/binding/f77/lib_libpmpich_la-initf.lo CC src/binding/f77/lib_libpmpich_la-initthreadf.lo CC src/binding/f77/lib_libpmpich_la-pcontrolf.lo CC src/binding/f77/lib_libpmpich_la-addressf.lo CC src/binding/f77/lib_libpmpich_la-getaddressf.lo CC src/binding/f77/lib_libpmpich_la-wtimef.lo CC src/binding/f77/lib_libpmpich_la-wtickf.lo CC src/binding/f77/lib_libpmpich_la-keyval_createf.lo CC src/binding/f77/lib_libpmpich_la-dup_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_del_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_copy_fnf.lo CC src/binding/f77/lib_libpmpich_la-dup_comm_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_comm_del_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_comm_copy_fnf.lo CC src/binding/f77/lib_libpmpich_la-dup_win_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_win_del_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_win_copy_fnf.lo CC src/binding/f77/lib_libpmpich_la-dup_type_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_type_del_fnf.lo CC src/binding/f77/lib_libpmpich_la-null_type_copy_fnf.lo CC src/binding/f77/lib_libpmpich_la-statusf2c.lo CC src/binding/f77/lib_libpmpich_la-statusc2f.lo CC src/mpi/attr/lib_libpmpich_la-attr_delete.lo CC src/mpi/attr/lib_libpmpich_la-attr_get.lo CC src/mpi/attr/lib_libpmpich_la-attr_put.lo CC src/mpi/attr/lib_libpmpich_la-comm_create_keyval.lo CC src/mpi/attr/lib_libpmpich_la-comm_delete_attr.lo CC src/mpi/attr/lib_libpmpich_la-comm_free_keyval.lo CC src/mpi/attr/lib_libpmpich_la-comm_get_attr.lo CC src/mpi/attr/lib_libpmpich_la-comm_set_attr.lo CC src/mpi/attr/lib_libpmpich_la-keyval_create.lo CC src/mpi/attr/lib_libpmpich_la-keyval_free.lo CC src/mpi/attr/lib_libpmpich_la-type_create_keyval.lo CC src/mpi/attr/lib_libpmpich_la-type_delete_attr.lo CC src/mpi/attr/lib_libpmpich_la-type_free_keyval.lo CC src/mpi/attr/lib_libpmpich_la-type_get_attr.lo CC src/mpi/attr/lib_libpmpich_la-type_set_attr.lo CC src/mpi/attr/lib_libpmpich_la-win_create_keyval.lo CC src/mpi/attr/lib_libpmpich_la-win_delete_attr.lo CC src/mpi/attr/lib_libpmpich_la-win_free_keyval.lo CC src/mpi/attr/lib_libpmpich_la-win_get_attr.lo CC src/mpi/attr/lib_libpmpich_la-win_set_attr.lo CC src/mpi/coll/lib_libpmpich_la-allreduce.lo CC src/mpi/coll/lib_libpmpich_la-barrier.lo CC src/mpi/coll/lib_libpmpich_la-op_create.lo CC src/mpi/coll/lib_libpmpich_la-op_free.lo CC src/mpi/coll/lib_libpmpich_la-bcast.lo CC src/mpi/coll/lib_libpmpich_la-alltoall.lo CC src/mpi/coll/lib_libpmpich_la-alltoallv.lo CC src/mpi/coll/lib_libpmpich_la-reduce.lo CC src/mpi/coll/lib_libpmpich_la-scatter.lo CC src/mpi/coll/lib_libpmpich_la-gather.lo CC src/mpi/coll/lib_libpmpich_la-scatterv.lo CC src/mpi/coll/lib_libpmpich_la-gatherv.lo CC src/mpi/coll/lib_libpmpich_la-scan.lo CC src/mpi/coll/lib_libpmpich_la-exscan.lo CC src/mpi/coll/lib_libpmpich_la-allgather.lo CC src/mpi/coll/lib_libpmpich_la-allgatherv.lo CC src/mpi/coll/lib_libpmpich_la-red_scat.lo CC src/mpi/coll/lib_libpmpich_la-alltoallw.lo CC src/mpi/coll/lib_libpmpich_la-reduce_local.lo CC src/mpi/coll/lib_libpmpich_la-op_commutative.lo CC src/mpi/coll/lib_libpmpich_la-red_scat_block.lo CC src/mpi/coll/lib_libpmpich_la-iallgather.lo CC src/mpi/coll/lib_libpmpich_la-iallgatherv.lo CC src/mpi/coll/lib_libpmpich_la-iallreduce.lo CC src/mpi/coll/lib_libpmpich_la-ialltoall.lo CC src/mpi/coll/lib_libpmpich_la-ialltoallv.lo CC src/mpi/coll/lib_libpmpich_la-ialltoallw.lo CC src/mpi/coll/lib_libpmpich_la-ibarrier.lo CC src/mpi/coll/lib_libpmpich_la-ibcast.lo CC src/mpi/coll/lib_libpmpich_la-iexscan.lo CC src/mpi/coll/lib_libpmpich_la-igather.lo CC src/mpi/coll/lib_libpmpich_la-igatherv.lo CC src/mpi/coll/lib_libpmpich_la-ired_scat.lo CC src/mpi/coll/lib_libpmpich_la-ired_scat_block.lo CC src/mpi/coll/lib_libpmpich_la-ireduce.lo CC src/mpi/coll/lib_libpmpich_la-iscan.lo CC src/mpi/coll/lib_libpmpich_la-iscatter.lo CC src/mpi/coll/lib_libpmpich_la-iscatterv.lo CC src/mpi/comm/lib_libpmpich_la-comm_compare.lo CC src/mpi/comm/lib_libpmpich_la-comm_create.lo CC src/mpi/comm/lib_libpmpich_la-comm_create_group.lo CC src/mpi/comm/lib_libpmpich_la-comm_dup.lo CC src/mpi/comm/lib_libpmpich_la-comm_dup_with_info.lo CC src/mpi/comm/lib_libpmpich_la-comm_free.lo CC src/mpi/comm/lib_libpmpich_la-comm_get_name.lo CC src/mpi/comm/lib_libpmpich_la-comm_get_info.lo CC src/mpi/comm/lib_libpmpich_la-comm_set_info.lo CC src/mpi/comm/lib_libpmpich_la-comm_group.lo CC src/mpi/comm/lib_libpmpich_la-comm_idup.lo CC src/mpi/comm/lib_libpmpich_la-comm_rank.lo CC src/mpi/comm/lib_libpmpich_la-comm_size.lo CC src/mpi/comm/lib_libpmpich_la-comm_remote_group.lo CC src/mpi/comm/lib_libpmpich_la-comm_remote_size.lo CC src/mpi/comm/lib_libpmpich_la-comm_set_name.lo CC src/mpi/comm/lib_libpmpich_la-comm_split.lo CC src/mpi/comm/lib_libpmpich_la-comm_test_inter.lo CC src/mpi/comm/lib_libpmpich_la-intercomm_create.lo CC src/mpi/comm/lib_libpmpich_la-intercomm_merge.lo CC src/mpi/comm/lib_libpmpich_la-comm_split_type.lo CC src/mpi/comm/lib_libpmpich_la-comm_group_failed.lo CC src/mpi/comm/lib_libpmpich_la-comm_reenable_anysource.lo CC src/mpi/comm/lib_libpmpich_la-comm_remote_group_failed.lo CC src/mpi/datatype/lib_libpmpich_la-address.lo CC src/mpi/datatype/lib_libpmpich_la-get_address.lo CC src/mpi/datatype/lib_libpmpich_la-get_count.lo CC src/mpi/datatype/lib_libpmpich_la-get_elements.lo CC src/mpi/datatype/lib_libpmpich_la-get_elements_x.lo CC src/mpi/datatype/lib_libpmpich_la-pack.lo CC src/mpi/datatype/lib_libpmpich_la-unpack.lo CC src/mpi/datatype/lib_libpmpich_la-pack_size.lo CC src/mpi/datatype/lib_libpmpich_la-status_set_elements.lo CC src/mpi/datatype/lib_libpmpich_la-status_set_elements_x.lo CC src/mpi/datatype/lib_libpmpich_la-type_get_name.lo CC src/mpi/datatype/lib_libpmpich_la-type_set_name.lo CC src/mpi/datatype/lib_libpmpich_la-type_size.lo CC src/mpi/datatype/lib_libpmpich_la-type_size_x.lo CC src/mpi/datatype/lib_libpmpich_la-type_extent.lo CC src/mpi/datatype/lib_libpmpich_la-type_vector.lo CC src/mpi/datatype/lib_libpmpich_la-type_commit.lo CC src/mpi/datatype/lib_libpmpich_la-type_indexed.lo CC src/mpi/datatype/lib_libpmpich_la-type_hindexed.lo CC src/mpi/datatype/lib_libpmpich_la-type_struct.lo CC src/mpi/datatype/lib_libpmpich_la-type_contiguous.lo CC src/mpi/datatype/lib_libpmpich_la-type_free.lo CC src/mpi/datatype/lib_libpmpich_la-type_hvector.lo CC src/mpi/datatype/lib_libpmpich_la-type_dup.lo CC src/mpi/datatype/lib_libpmpich_la-type_get_envelope.lo CC src/mpi/datatype/lib_libpmpich_la-type_get_contents.lo CC src/mpi/datatype/lib_libpmpich_la-type_ub.lo CC src/mpi/datatype/lib_libpmpich_la-type_lb.lo CC src/mpi/datatype/lib_libpmpich_la-type_get_extent.lo CC src/mpi/datatype/lib_libpmpich_la-type_get_extent_x.lo CC src/mpi/datatype/lib_libpmpich_la-type_get_true_extent.lo CC src/mpi/datatype/lib_libpmpich_la-type_get_true_extent_x.lo CC src/mpi/datatype/lib_libpmpich_la-type_match_size.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_struct.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_hindexed.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_hvector.lo CC src/mpi/datatype/lib_libpmpich_la-pack_external.lo CC src/mpi/datatype/lib_libpmpich_la-pack_external_size.lo CC src/mpi/datatype/lib_libpmpich_la-unpack_external.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_indexed_block.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_hindexed_block.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_resized.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_darray.lo CC src/mpi/datatype/lib_libpmpich_la-type_create_subarray.lo CC src/mpi/errhan/lib_libpmpich_la-add_error_code.lo CC src/mpi/errhan/lib_libpmpich_la-add_error_class.lo CC src/mpi/errhan/lib_libpmpich_la-add_error_string.lo CC src/mpi/errhan/lib_libpmpich_la-comm_call_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-comm_create_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-comm_get_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-comm_set_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-errhandler_create.lo CC src/mpi/errhan/lib_libpmpich_la-errhandler_free.lo CC src/mpi/errhan/lib_libpmpich_la-errhandler_get.lo CC src/mpi/errhan/lib_libpmpich_la-errhandler_set.lo CC src/mpi/errhan/lib_libpmpich_la-error_class.lo CC src/mpi/errhan/lib_libpmpich_la-error_string.lo CC src/mpi/errhan/lib_libpmpich_la-file_create_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-file_get_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-file_set_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-file_call_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-win_create_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-win_call_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-win_get_errhandler.lo CC src/mpi/errhan/lib_libpmpich_la-win_set_errhandler.lo CC src/mpi/group/lib_libpmpich_la-group_compare.lo CC src/mpi/group/lib_libpmpich_la-group_difference.lo CC src/mpi/group/lib_libpmpich_la-group_excl.lo CC src/mpi/group/lib_libpmpich_la-group_free.lo CC src/mpi/group/lib_libpmpich_la-group_incl.lo CC src/mpi/group/lib_libpmpich_la-group_intersection.lo CC src/mpi/group/lib_libpmpich_la-group_range_excl.lo CC src/mpi/group/lib_libpmpich_la-group_range_incl.lo CC src/mpi/group/lib_libpmpich_la-group_rank.lo CC src/mpi/group/lib_libpmpich_la-group_size.lo CC src/mpi/group/lib_libpmpich_la-group_translate_ranks.lo CC src/mpi/group/lib_libpmpich_la-group_union.lo CC src/mpi/info/lib_libpmpich_la-info_create.lo CC src/mpi/info/lib_libpmpich_la-info_delete.lo CC src/mpi/info/lib_libpmpich_la-info_dup.lo CC src/mpi/info/lib_libpmpich_la-info_free.lo CC src/mpi/info/lib_libpmpich_la-info_get.lo CC src/mpi/info/lib_libpmpich_la-info_getn.lo CC src/mpi/info/lib_libpmpich_la-info_getnth.lo CC src/mpi/info/lib_libpmpich_la-info_getvallen.lo CC src/mpi/info/lib_libpmpich_la-info_set.lo CC src/mpi/init/lib_libpmpich_la-abort.lo CC src/mpi/init/lib_libpmpich_la-init.lo CC src/mpi/init/lib_libpmpich_la-initialized.lo CC src/mpi/init/lib_libpmpich_la-initthread.lo CC src/mpi/init/lib_libpmpich_la-ismain.lo CC src/mpi/init/lib_libpmpich_la-finalize.lo CC src/mpi/init/lib_libpmpich_la-finalized.lo CC src/mpi/init/lib_libpmpich_la-querythread.lo CC src/mpi/misc/lib_libpmpich_la-getpname.lo CC src/mpi/misc/lib_libpmpich_la-pcontrol.lo CC src/mpi/misc/lib_libpmpich_la-version.lo CC src/mpi/misc/lib_libpmpich_la-library_version.lo CC src/mpi/pt2pt/lib_libpmpich_la-bsend.lo CC src/mpi/pt2pt/lib_libpmpich_la-bsend_init.lo CC src/mpi/pt2pt/lib_libpmpich_la-bufattach.lo CC src/mpi/pt2pt/lib_libpmpich_la-buffree.lo CC src/mpi/pt2pt/lib_libpmpich_la-cancel.lo CC src/mpi/pt2pt/lib_libpmpich_la-greq_start.lo CC src/mpi/pt2pt/lib_libpmpich_la-greq_complete.lo CC src/mpi/pt2pt/lib_libpmpich_la-ibsend.lo CC src/mpi/pt2pt/lib_libpmpich_la-improbe.lo CC src/mpi/pt2pt/lib_libpmpich_la-imrecv.lo CC src/mpi/pt2pt/lib_libpmpich_la-iprobe.lo CC src/mpi/pt2pt/lib_libpmpich_la-irecv.lo CC src/mpi/pt2pt/lib_libpmpich_la-irsend.lo CC src/mpi/pt2pt/lib_libpmpich_la-isend.lo CC src/mpi/pt2pt/lib_libpmpich_la-issend.lo CC src/mpi/pt2pt/lib_libpmpich_la-mprobe.lo CC src/mpi/pt2pt/lib_libpmpich_la-mrecv.lo CC src/mpi/pt2pt/lib_libpmpich_la-probe.lo CC src/mpi/pt2pt/lib_libpmpich_la-recv.lo CC src/mpi/pt2pt/lib_libpmpich_la-recv_init.lo CC src/mpi/pt2pt/lib_libpmpich_la-request_free.lo CC src/mpi/pt2pt/lib_libpmpich_la-request_get_status.lo CC src/mpi/pt2pt/lib_libpmpich_la-rsend.lo CC src/mpi/pt2pt/lib_libpmpich_la-rsend_init.lo CC src/mpi/pt2pt/lib_libpmpich_la-send.lo CC src/mpi/pt2pt/lib_libpmpich_la-send_init.lo CC src/mpi/pt2pt/lib_libpmpich_la-sendrecv.lo CC src/mpi/pt2pt/lib_libpmpich_la-sendrecv_rep.lo CC src/mpi/pt2pt/lib_libpmpich_la-status_set_cancelled.lo CC src/mpi/pt2pt/lib_libpmpich_la-ssend.lo CC src/mpi/pt2pt/lib_libpmpich_la-ssend_init.lo CC src/mpi/pt2pt/lib_libpmpich_la-start.lo CC src/mpi/pt2pt/lib_libpmpich_la-startall.lo CC src/mpi/pt2pt/lib_libpmpich_la-test.lo CC src/mpi/pt2pt/lib_libpmpich_la-test_cancelled.lo CC src/mpi/pt2pt/lib_libpmpich_la-testall.lo CC src/mpi/pt2pt/lib_libpmpich_la-testany.lo CC src/mpi/pt2pt/lib_libpmpich_la-testsome.lo CC src/mpi/pt2pt/lib_libpmpich_la-wait.lo CC src/mpi/pt2pt/lib_libpmpich_la-waitall.lo CC src/mpi/pt2pt/lib_libpmpich_la-waitany.lo CC src/mpi/pt2pt/lib_libpmpich_la-waitsome.lo CC src/mpi/rma/lib_libpmpich_la-accumulate.lo CC src/mpi/rma/lib_libpmpich_la-alloc_mem.lo CC src/mpi/rma/lib_libpmpich_la-compare_and_swap.lo CC src/mpi/rma/lib_libpmpich_la-fetch_and_op.lo CC src/mpi/rma/lib_libpmpich_la-free_mem.lo CC src/mpi/rma/lib_libpmpich_la-get.lo CC src/mpi/rma/lib_libpmpich_la-get_accumulate.lo CC src/mpi/rma/lib_libpmpich_la-put.lo CC src/mpi/rma/lib_libpmpich_la-raccumulate.lo CC src/mpi/rma/lib_libpmpich_la-rget.lo CC src/mpi/rma/lib_libpmpich_la-rget_accumulate.lo CC src/mpi/rma/lib_libpmpich_la-rput.lo CC src/mpi/rma/lib_libpmpich_la-win_allocate.lo CC src/mpi/rma/lib_libpmpich_la-win_allocate_shared.lo CC src/mpi/rma/lib_libpmpich_la-win_attach.lo CC src/mpi/rma/lib_libpmpich_la-win_complete.lo CC src/mpi/rma/lib_libpmpich_la-win_create.lo CC src/mpi/rma/lib_libpmpich_la-win_create_dynamic.lo CC src/mpi/rma/lib_libpmpich_la-win_detach.lo CC src/mpi/rma/lib_libpmpich_la-win_fence.lo CC src/mpi/rma/lib_libpmpich_la-win_flush.lo CC src/mpi/rma/lib_libpmpich_la-win_flush_all.lo CC src/mpi/rma/lib_libpmpich_la-win_flush_local.lo CC src/mpi/rma/lib_libpmpich_la-win_flush_local_all.lo CC src/mpi/rma/lib_libpmpich_la-win_free.lo CC src/mpi/rma/lib_libpmpich_la-win_get_group.lo CC src/mpi/rma/lib_libpmpich_la-win_get_info.lo CC src/mpi/rma/lib_libpmpich_la-win_get_name.lo CC src/mpi/rma/lib_libpmpich_la-win_lock.lo CC src/mpi/rma/lib_libpmpich_la-win_lock_all.lo CC src/mpi/rma/lib_libpmpich_la-win_post.lo CC src/mpi/rma/lib_libpmpich_la-win_set_info.lo CC src/mpi/rma/lib_libpmpich_la-win_set_name.lo CC src/mpi/rma/lib_libpmpich_la-win_shared_query.lo CC src/mpi/rma/lib_libpmpich_la-win_start.lo CC src/mpi/rma/lib_libpmpich_la-win_sync.lo CC src/mpi/rma/lib_libpmpich_la-win_test.lo CC src/mpi/rma/lib_libpmpich_la-win_unlock.lo CC src/mpi/rma/lib_libpmpich_la-win_unlock_all.lo CC src/mpi/rma/lib_libpmpich_la-win_wait.lo CC src/mpi/spawn/lib_libpmpich_la-comm_disconnect.lo CC src/mpi/spawn/lib_libpmpich_la-comm_get_parent.lo CC src/mpi/spawn/lib_libpmpich_la-comm_join.lo CC src/mpi/spawn/lib_libpmpich_la-comm_spawn.lo CC src/mpi/spawn/lib_libpmpich_la-comm_spawn_multiple.lo CC src/mpi/spawn/lib_libpmpich_la-lookup_name.lo CC src/mpi/spawn/lib_libpmpich_la-publish_name.lo CC src/mpi/spawn/lib_libpmpich_la-unpublish_name.lo CC src/mpi/spawn/lib_libpmpich_la-open_port.lo CC src/mpi/spawn/lib_libpmpich_la-close_port.lo CC src/mpi/spawn/lib_libpmpich_la-comm_connect.lo CC src/mpi/spawn/lib_libpmpich_la-comm_accept.lo CC src/mpi/timer/lib_libpmpich_la-wtime.lo CC src/mpi/timer/lib_libpmpich_la-wtick.lo CC src/mpi/topo/lib_libpmpich_la-cart_coords.lo CC src/mpi/topo/lib_libpmpich_la-cart_create.lo CC src/mpi/topo/lib_libpmpich_la-cart_get.lo CC src/mpi/topo/lib_libpmpich_la-cart_map.lo CC src/mpi/topo/lib_libpmpich_la-cart_rank.lo CC src/mpi/topo/lib_libpmpich_la-cart_shift.lo CC src/mpi/topo/lib_libpmpich_la-cart_sub.lo CC src/mpi/topo/lib_libpmpich_la-dims_create.lo CC src/mpi/topo/lib_libpmpich_la-graph_get.lo CC src/mpi/topo/lib_libpmpich_la-graph_map.lo CC src/mpi/topo/lib_libpmpich_la-graphcreate.lo CC src/mpi/topo/lib_libpmpich_la-graph_nbr.lo CC src/mpi/topo/lib_libpmpich_la-graphdimsget.lo CC src/mpi/topo/lib_libpmpich_la-graphnbrcnt.lo CC src/mpi/topo/lib_libpmpich_la-cartdim_get.lo CC src/mpi/topo/lib_libpmpich_la-topo_test.lo CC src/mpi/topo/lib_libpmpich_la-dist_gr_create_adj.lo CC src/mpi/topo/lib_libpmpich_la-dist_gr_create.lo CC src/mpi/topo/lib_libpmpich_la-dist_gr_neighb_count.lo CC src/mpi/topo/lib_libpmpich_la-dist_gr_neighb.lo CC src/mpi/topo/lib_libpmpich_la-inhb_allgather.lo CC src/mpi/topo/lib_libpmpich_la-inhb_allgatherv.lo CC src/mpi/topo/lib_libpmpich_la-inhb_alltoall.lo CC src/mpi/topo/lib_libpmpich_la-inhb_alltoallv.lo CC src/mpi/topo/lib_libpmpich_la-inhb_alltoallw.lo CC src/mpi/topo/lib_libpmpich_la-nhb_allgather.lo CC src/mpi/topo/lib_libpmpich_la-nhb_allgatherv.lo CC src/mpi/topo/lib_libpmpich_la-nhb_alltoall.lo CC src/mpi/topo/lib_libpmpich_la-nhb_alltoallv.lo CC src/mpi/topo/lib_libpmpich_la-nhb_alltoallw.lo CC src/binding/f90/lib_libpmpich_la-create_f90_real.lo CC src/binding/f90/lib_libpmpich_la-create_f90_int.lo CC src/binding/f90/lib_libpmpich_la-create_f90_complex.lo CC src/binding/f90/lib_libpmpich_la-typef90cmplxf.lo CC src/binding/f90/lib_libpmpich_la-typef90realf.lo CC src/binding/f90/lib_libpmpich_la-typef90intf.lo CC src/mutex/lib_libpmpich_la-mutex_create.lo CC src/mutex/lib_libpmpich_la-mutex_free.lo CC src/mutex/lib_libpmpich_la-mutex_lock.lo CC src/mutex/lib_libpmpich_la-mutex_unlock.lo CC src/mpi_t/lib_libpmpich_la-cat_changed.lo CC src/mpi_t/lib_libpmpich_la-cat_get_categories.lo CC src/mpi_t/lib_libpmpich_la-cat_get_cvars.lo CC src/mpi_t/lib_libpmpich_la-cat_get_info.lo CC src/mpi_t/lib_libpmpich_la-cat_get_num.lo CC src/mpi_t/lib_libpmpich_la-cat_get_pv.lo CC src/mpi_t/lib_libpmpich_la-cvar_get_info.lo CC src/mpi_t/lib_libpmpich_la-cvar_get_num.lo CC src/mpi_t/lib_libpmpich_la-cvar_handle_alloc.lo CC src/mpi_t/lib_libpmpich_la-cvar_handle_free.lo CC src/mpi_t/lib_libpmpich_la-cvar_read.lo CC src/mpi_t/lib_libpmpich_la-cvar_write.lo CC src/mpi_t/lib_libpmpich_la-enum_get_info.lo CC src/mpi_t/lib_libpmpich_la-enum_get_item.lo CC src/mpi_t/lib_libpmpich_la-mpit_finalize.lo CC src/mpi_t/lib_libpmpich_la-mpit_init_thread.lo CC src/mpi_t/lib_libpmpich_la-pvar_get_info.lo CC src/mpi_t/lib_libpmpich_la-pvar_get_num.lo CC src/mpi_t/lib_libpmpich_la-pvar_handle_alloc.lo CC src/mpi_t/lib_libpmpich_la-pvar_handle_free.lo CC src/mpi_t/lib_libpmpich_la-pvar_read.lo CC src/mpi_t/lib_libpmpich_la-pvar_readreset.lo CC src/mpi_t/lib_libpmpich_la-pvar_reset.lo CC src/mpi_t/lib_libpmpich_la-pvar_session_create.lo CC src/mpi_t/lib_libpmpich_la-pvar_session_free.lo CC src/mpi_t/lib_libpmpich_la-pvar_start.lo CC src/mpi_t/lib_libpmpich_la-pvar_stop.lo CC src/mpi_t/lib_libpmpich_la-pvar_write.lo CXX src/binding/cxx/initcxx.lo CC src/binding/f77/lib_libfmpich_la-sendf.lo CC src/binding/f77/lib_libfmpich_la-recvf.lo CC src/binding/f77/lib_libfmpich_la-get_countf.lo CC src/binding/f77/lib_libfmpich_la-bsendf.lo CC src/binding/f77/lib_libfmpich_la-ssendf.lo CC src/binding/f77/lib_libfmpich_la-rsendf.lo CC src/binding/f77/lib_libfmpich_la-bufattachf.lo CC src/binding/f77/lib_libfmpich_la-bufdetachf.lo CC src/binding/f77/lib_libfmpich_la-isendf.lo CC src/binding/f77/lib_libfmpich_la-ibsendf.lo CC src/binding/f77/lib_libfmpich_la-issendf.lo CC src/binding/f77/lib_libfmpich_la-irsendf.lo CC src/binding/f77/lib_libfmpich_la-irecvf.lo CC src/binding/f77/lib_libfmpich_la-waitf.lo CC src/binding/f77/lib_libfmpich_la-testf.lo CC src/binding/f77/lib_libfmpich_la-request_freef.lo CC src/binding/f77/lib_libfmpich_la-waitanyf.lo CC src/binding/f77/lib_libfmpich_la-testanyf.lo CC src/binding/f77/lib_libfmpich_la-waitallf.lo CC src/binding/f77/lib_libfmpich_la-testallf.lo CC src/binding/f77/lib_libfmpich_la-waitsomef.lo CC src/binding/f77/lib_libfmpich_la-testsomef.lo CC src/binding/f77/lib_libfmpich_la-iprobef.lo CC src/binding/f77/lib_libfmpich_la-probef.lo CC src/binding/f77/lib_libfmpich_la-cancelf.lo CC src/binding/f77/lib_libfmpich_la-testcancelf.lo CC src/binding/f77/lib_libfmpich_la-send_initf.lo CC src/binding/f77/lib_libfmpich_la-bsend_initf.lo CC src/binding/f77/lib_libfmpich_la-ssend_initf.lo CC src/binding/f77/lib_libfmpich_la-rsend_initf.lo CC src/binding/f77/lib_libfmpich_la-recv_initf.lo CC src/binding/f77/lib_libfmpich_la-startf.lo CC src/binding/f77/lib_libfmpich_la-startallf.lo CC src/binding/f77/lib_libfmpich_la-sendrecvf.lo CC src/binding/f77/lib_libfmpich_la-sndrcvrplf.lo CC src/binding/f77/lib_libfmpich_la-typecontigf.lo CC src/binding/f77/lib_libfmpich_la-type_vectorf.lo CC src/binding/f77/lib_libfmpich_la-type_hvectorf.lo CC src/binding/f77/lib_libfmpich_la-type_indexedf.lo CC src/binding/f77/lib_libfmpich_la-type_hindexedf.lo CC src/binding/f77/lib_libfmpich_la-type_extentf.lo CC src/binding/f77/lib_libfmpich_la-type_structf.lo CC src/binding/f77/lib_libfmpich_la-type_sizef.lo CC src/binding/f77/lib_libfmpich_la-type_lbf.lo CC src/binding/f77/lib_libfmpich_la-type_ubf.lo CC src/binding/f77/lib_libfmpich_la-type_commitf.lo CC src/binding/f77/lib_libfmpich_la-type_freef.lo CC src/binding/f77/lib_libfmpich_la-get_elementsf.lo CC src/binding/f77/lib_libfmpich_la-packf.lo CC src/binding/f77/lib_libfmpich_la-unpackf.lo CC src/binding/f77/lib_libfmpich_la-pack_sizef.lo CC src/binding/f77/lib_libfmpich_la-barrierf.lo CC src/binding/f77/lib_libfmpich_la-bcastf.lo CC src/binding/f77/lib_libfmpich_la-gatherf.lo CC src/binding/f77/lib_libfmpich_la-gathervf.lo CC src/binding/f77/lib_libfmpich_la-scatterf.lo CC src/binding/f77/lib_libfmpich_la-scattervf.lo CC src/binding/f77/lib_libfmpich_la-allgatherf.lo CC src/binding/f77/lib_libfmpich_la-allgathervf.lo CC src/binding/f77/lib_libfmpich_la-alltoallf.lo CC src/binding/f77/lib_libfmpich_la-alltoallvf.lo CC src/binding/f77/lib_libfmpich_la-alltoallwf.lo CC src/binding/f77/lib_libfmpich_la-exscanf.lo CC src/binding/f77/lib_libfmpich_la-reducef.lo CC src/binding/f77/lib_libfmpich_la-op_createf.lo CC src/binding/f77/lib_libfmpich_la-op_freef.lo CC src/binding/f77/lib_libfmpich_la-allreducef.lo CC src/binding/f77/lib_libfmpich_la-redscatf.lo CC src/binding/f77/lib_libfmpich_la-scanf.lo CC src/binding/f77/lib_libfmpich_la-group_sizef.lo CC src/binding/f77/lib_libfmpich_la-group_rankf.lo CC src/binding/f77/lib_libfmpich_la-grouptranksf.lo CC src/binding/f77/lib_libfmpich_la-group_comparef.lo CC src/binding/f77/lib_libfmpich_la-comm_groupf.lo CC src/binding/f77/lib_libfmpich_la-group_unionf.lo CC src/binding/f77/lib_libfmpich_la-groupinterf.lo CC src/binding/f77/lib_libfmpich_la-groupdifff.lo CC src/binding/f77/lib_libfmpich_la-group_inclf.lo CC src/binding/f77/lib_libfmpich_la-group_exclf.lo CC src/binding/f77/lib_libfmpich_la-grouprinclf.lo CC src/binding/f77/lib_libfmpich_la-grouprexclf.lo CC src/binding/f77/lib_libfmpich_la-group_freef.lo CC src/binding/f77/lib_libfmpich_la-comm_sizef.lo CC src/binding/f77/lib_libfmpich_la-comm_rankf.lo CC src/binding/f77/lib_libfmpich_la-comm_comparef.lo CC src/binding/f77/lib_libfmpich_la-comm_dupf.lo CC src/binding/f77/lib_libfmpich_la-comm_dup_with_infof.lo CC src/binding/f77/lib_libfmpich_la-comm_createf.lo CC src/binding/f77/lib_libfmpich_la-comm_splitf.lo CC src/binding/f77/lib_libfmpich_la-comm_freef.lo CC src/binding/f77/lib_libfmpich_la-commtesticf.lo CC src/binding/f77/lib_libfmpich_la-commrsizef.lo CC src/binding/f77/lib_libfmpich_la-commrgroupf.lo CC src/binding/f77/lib_libfmpich_la-iccreatef.lo CC src/binding/f77/lib_libfmpich_la-icmergef.lo CC src/binding/f77/lib_libfmpich_la-keyval_freef.lo CC src/binding/f77/lib_libfmpich_la-attr_putf.lo CC src/binding/f77/lib_libfmpich_la-attr_getf.lo CC src/binding/f77/lib_libfmpich_la-attr_deletef.lo CC src/binding/f77/lib_libfmpich_la-topo_testf.lo CC src/binding/f77/lib_libfmpich_la-cart_createf.lo CC src/binding/f77/lib_libfmpich_la-dims_createf.lo CC src/binding/f77/lib_libfmpich_la-graph_createf.lo CC src/binding/f77/lib_libfmpich_la-graphdims_getf.lo CC src/binding/f77/lib_libfmpich_la-graph_getf.lo CC src/binding/f77/lib_libfmpich_la-cartdim_getf.lo CC src/binding/f77/lib_libfmpich_la-cart_getf.lo CC src/binding/f77/lib_libfmpich_la-cart_rankf.lo CC src/binding/f77/lib_libfmpich_la-cart_coordsf.lo CC src/binding/f77/lib_libfmpich_la-grfnbcountf.lo CC src/binding/f77/lib_libfmpich_la-grfnbrsf.lo CC src/binding/f77/lib_libfmpich_la-cart_shiftf.lo CC src/binding/f77/lib_libfmpich_la-cart_subf.lo CC src/binding/f77/lib_libfmpich_la-cart_mapf.lo CC src/binding/f77/lib_libfmpich_la-graph_mapf.lo CC src/binding/f77/lib_libfmpich_la-getpnamef.lo CC src/binding/f77/lib_libfmpich_la-get_versionf.lo CC src/binding/f77/lib_libfmpich_la-get_library_versionf.lo CC src/binding/f77/lib_libfmpich_la-errhcreatef.lo CC src/binding/f77/lib_libfmpich_la-errhsetf.lo CC src/binding/f77/lib_libfmpich_la-errhgetf.lo CC src/binding/f77/lib_libfmpich_la-errhfreef.lo CC src/binding/f77/lib_libfmpich_la-error_stringf.lo CC src/binding/f77/lib_libfmpich_la-error_classf.lo CC src/binding/f77/lib_libfmpich_la-finalizef.lo CC src/binding/f77/lib_libfmpich_la-initializedf.lo CC src/binding/f77/lib_libfmpich_la-abortf.lo CC src/binding/f77/lib_libfmpich_la-close_portf.lo CC src/binding/f77/lib_libfmpich_la-comm_acceptf.lo CC src/binding/f77/lib_libfmpich_la-comm_connectf.lo CC src/binding/f77/lib_libfmpich_la-commdiscf.lo CC src/binding/f77/lib_libfmpich_la-commparentf.lo CC src/binding/f77/lib_libfmpich_la-comm_joinf.lo CC src/binding/f77/lib_libfmpich_la-comm_spawnf.lo CC src/binding/f77/lib_libfmpich_la-spawnmultf.lo CC src/binding/f77/lib_libfmpich_la-lookup_namef.lo CC src/binding/f77/lib_libfmpich_la-open_portf.lo CC src/binding/f77/lib_libfmpich_la-publish_namef.lo CC src/binding/f77/lib_libfmpich_la-unpubnamef.lo CC src/binding/f77/lib_libfmpich_la-comm_set_infof.lo CC src/binding/f77/lib_libfmpich_la-comm_get_infof.lo CC src/binding/f77/lib_libfmpich_la-accumulatef.lo CC src/binding/f77/lib_libfmpich_la-getf.lo CC src/binding/f77/lib_libfmpich_la-putf.lo CC src/binding/f77/lib_libfmpich_la-win_completef.lo CC src/binding/f77/lib_libfmpich_la-win_createf.lo CC src/binding/f77/lib_libfmpich_la-win_fencef.lo CC src/binding/f77/lib_libfmpich_la-win_freef.lo CC src/binding/f77/lib_libfmpich_la-win_get_groupf.lo CC src/binding/f77/lib_libfmpich_la-win_lockf.lo CC src/binding/f77/lib_libfmpich_la-win_postf.lo CC src/binding/f77/lib_libfmpich_la-win_startf.lo CC src/binding/f77/lib_libfmpich_la-win_testf.lo CC src/binding/f77/lib_libfmpich_la-win_unlockf.lo CC src/binding/f77/lib_libfmpich_la-win_waitf.lo CC src/binding/f77/lib_libfmpich_la-win_allocatef.lo CC src/binding/f77/lib_libfmpich_la-win_allocate_sharedf.lo CC src/binding/f77/lib_libfmpich_la-win_shared_queryf.lo CC src/binding/f77/lib_libfmpich_la-win_create_dynamicf.lo CC src/binding/f77/lib_libfmpich_la-win_attachf.lo CC src/binding/f77/lib_libfmpich_la-win_detachf.lo CC src/binding/f77/lib_libfmpich_la-win_get_infof.lo CC src/binding/f77/lib_libfmpich_la-win_set_infof.lo CC src/binding/f77/lib_libfmpich_la-get_accumulatef.lo CC src/binding/f77/lib_libfmpich_la-fetch_and_opf.lo CC src/binding/f77/lib_libfmpich_la-compare_and_swapf.lo CC src/binding/f77/lib_libfmpich_la-rputf.lo CC src/binding/f77/lib_libfmpich_la-rgetf.lo CC src/binding/f77/lib_libfmpich_la-raccumulatef.lo CC src/binding/f77/lib_libfmpich_la-rget_accumulatef.lo CC src/binding/f77/lib_libfmpich_la-win_lock_allf.lo CC src/binding/f77/lib_libfmpich_la-win_unlock_allf.lo CC src/binding/f77/lib_libfmpich_la-win_flushf.lo CC src/binding/f77/lib_libfmpich_la-win_flush_allf.lo CC src/binding/f77/lib_libfmpich_la-win_flush_localf.lo CC src/binding/f77/lib_libfmpich_la-win_flush_local_allf.lo CC src/binding/f77/lib_libfmpich_la-win_syncf.lo CC src/binding/f77/lib_libfmpich_la-adderrclassf.lo CC src/binding/f77/lib_libfmpich_la-adderrcodef.lo CC src/binding/f77/lib_libfmpich_la-adderrstringf.lo CC src/binding/f77/lib_libfmpich_la-commcallerrf.lo CC src/binding/f77/lib_libfmpich_la-commnewkeyf.lo CC src/binding/f77/lib_libfmpich_la-commdelattrf.lo CC src/binding/f77/lib_libfmpich_la-commfreekeyf.lo CC src/binding/f77/lib_libfmpich_la-comm_get_attrf.lo CC src/binding/f77/lib_libfmpich_la-commgetnamf.lo CC src/binding/f77/lib_libfmpich_la-comm_set_attrf.lo CC src/binding/f77/lib_libfmpich_la-comm_set_namef.lo CC src/binding/f77/lib_libfmpich_la-filecallerrf.lo CC src/binding/f77/lib_libfmpich_la-greqcompletef.lo CC src/binding/f77/lib_libfmpich_la-greqstartf.lo CC src/binding/f77/lib_libfmpich_la-isthrmainf.lo CC src/binding/f77/lib_libfmpich_la-query_threadf.lo CC src/binding/f77/lib_libfmpich_la-statgetclf.lo CC src/binding/f77/lib_libfmpich_la-statsetelf.lo CC src/binding/f77/lib_libfmpich_la-typenewkeyf.lo CC src/binding/f77/lib_libfmpich_la-typedelattrf.lo CC src/binding/f77/lib_libfmpich_la-type_dupf.lo CC src/binding/f77/lib_libfmpich_la-typefreekeyf.lo CC src/binding/f77/lib_libfmpich_la-type_get_attrf.lo CC src/binding/f77/lib_libfmpich_la-typegetcntsf.lo CC src/binding/f77/lib_libfmpich_la-typegetenvf.lo CC src/binding/f77/lib_libfmpich_la-typegnamef.lo CC src/binding/f77/lib_libfmpich_la-typesetattrf.lo CC src/binding/f77/lib_libfmpich_la-typesetnamef.lo CC src/binding/f77/lib_libfmpich_la-type_match_sizef.lo CC src/binding/f77/lib_libfmpich_la-wincallerrf.lo CC src/binding/f77/lib_libfmpich_la-winnewkeyf.lo CC src/binding/f77/lib_libfmpich_la-windelattrf.lo CC src/binding/f77/lib_libfmpich_la-winfreekeyf.lo CC src/binding/f77/lib_libfmpich_la-win_get_attrf.lo CC src/binding/f77/lib_libfmpich_la-win_get_namef.lo CC src/binding/f77/lib_libfmpich_la-win_set_attrf.lo CC src/binding/f77/lib_libfmpich_la-win_set_namef.lo CC src/binding/f77/lib_libfmpich_la-alloc_memf.lo CC src/binding/f77/lib_libfmpich_la-commcreerrf.lo CC src/binding/f77/lib_libfmpich_la-commgeterrf.lo CC src/binding/f77/lib_libfmpich_la-commseterrf.lo CC src/binding/f77/lib_libfmpich_la-filecreerrf.lo CC src/binding/f77/lib_libfmpich_la-filegeterrf.lo CC src/binding/f77/lib_libfmpich_la-fileseterrf.lo CC src/binding/f77/lib_libfmpich_la-finalizedf.lo CC src/binding/f77/lib_libfmpich_la-free_memf.lo CC src/binding/f77/lib_libfmpich_la-info_createf.lo CC src/binding/f77/lib_libfmpich_la-info_deletef.lo CC src/binding/f77/lib_libfmpich_la-info_dupf.lo CC src/binding/f77/lib_libfmpich_la-info_freef.lo CC src/binding/f77/lib_libfmpich_la-info_getf.lo CC src/binding/f77/lib_libfmpich_la-infognkf.lo CC src/binding/f77/lib_libfmpich_la-infognthkf.lo CC src/binding/f77/lib_libfmpich_la-infovallenf.lo CC src/binding/f77/lib_libfmpich_la-info_setf.lo CC src/binding/f77/lib_libfmpich_la-pack_externalf.lo CC src/binding/f77/lib_libfmpich_la-packesizef.lo CC src/binding/f77/lib_libfmpich_la-reqgetstatf.lo CC src/binding/f77/lib_libfmpich_la-typedarrayf.lo CC src/binding/f77/lib_libfmpich_la-typechindf.lo CC src/binding/f77/lib_libfmpich_la-typechvecf.lo CC src/binding/f77/lib_libfmpich_la-typecindbf.lo CC src/binding/f77/lib_libfmpich_la-type_create_hindexed_blockf.lo CC src/binding/f77/lib_libfmpich_la-typecresizef.lo CC src/binding/f77/lib_libfmpich_la-typecstructf.lo CC src/binding/f77/lib_libfmpich_la-typecsubarrf.lo CC src/binding/f77/lib_libfmpich_la-typegetextentf.lo CC src/binding/f77/lib_libfmpich_la-typegtextf.lo CC src/binding/f77/lib_libfmpich_la-unpackextf.lo CC src/binding/f77/lib_libfmpich_la-wincreerrf.lo CC src/binding/f77/lib_libfmpich_la-wingeterrf.lo CC src/binding/f77/lib_libfmpich_la-winseterrf.lo CC src/binding/f77/lib_libfmpich_la-reduce_localf.lo CC src/binding/f77/lib_libfmpich_la-op_commutativef.lo CC src/binding/f77/lib_libfmpich_la-reduce_scatter_blockf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_create_adjacentf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_createf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_neighbors_countf.lo CC src/binding/f77/lib_libfmpich_la-dist_graph_neighborsf.lo CC src/binding/f77/lib_libfmpich_la-improbef.lo CC src/binding/f77/lib_libfmpich_la-imrecvf.lo CC src/binding/f77/lib_libfmpich_la-mprobef.lo CC src/binding/f77/lib_libfmpich_la-mrecvf.lo CC src/binding/f77/lib_libfmpich_la-comm_idupf.lo CC src/binding/f77/lib_libfmpich_la-ibarrierf.lo CC src/binding/f77/lib_libfmpich_la-ibcastf.lo CC src/binding/f77/lib_libfmpich_la-igatherf.lo CC src/binding/f77/lib_libfmpich_la-igathervf.lo CC src/binding/f77/lib_libfmpich_la-iscatterf.lo CC src/binding/f77/lib_libfmpich_la-iscattervf.lo CC src/binding/f77/lib_libfmpich_la-iallgatherf.lo CC src/binding/f77/lib_libfmpich_la-iallgathervf.lo CC src/binding/f77/lib_libfmpich_la-ialltoallf.lo CC src/binding/f77/lib_libfmpich_la-ialltoallvf.lo CC src/binding/f77/lib_libfmpich_la-ialltoallwf.lo CC src/binding/f77/lib_libfmpich_la-ireducef.lo CC src/binding/f77/lib_libfmpich_la-iallreducef.lo CC src/binding/f77/lib_libfmpich_la-ireduce_scatterf.lo CC src/binding/f77/lib_libfmpich_la-ireduce_scatter_blockf.lo CC src/binding/f77/lib_libfmpich_la-iscanf.lo CC src/binding/f77/lib_libfmpich_la-iexscanf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_allgatherf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_allgathervf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_alltoallf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_alltoallvf.lo CC src/binding/f77/lib_libfmpich_la-ineighbor_alltoallwf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_allgatherf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_allgathervf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_alltoallf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_alltoallvf.lo CC src/binding/f77/lib_libfmpich_la-neighbor_alltoallwf.lo CC src/binding/f77/lib_libfmpich_la-comm_split_typef.lo CC src/binding/f77/lib_libfmpich_la-get_elements_xf.lo CC src/binding/f77/lib_libfmpich_la-status_set_elements_xf.lo CC src/binding/f77/lib_libfmpich_la-type_get_extent_xf.lo CC src/binding/f77/lib_libfmpich_la-type_get_true_extent_xf.lo CC src/binding/f77/lib_libfmpich_la-type_size_xf.lo CC src/binding/f77/lib_libfmpich_la-comm_create_groupf.lo CC src/binding/f77/lib_libfmpich_la-comm_group_failedf.lo CC src/binding/f77/lib_libfmpich_la-comm_remote_group_failedf.lo CC src/binding/f77/lib_libfmpich_la-comm_reenable_anysourcef.lo CC src/binding/f77/lib_libfmpich_la-file_openf.lo CC src/binding/f77/lib_libfmpich_la-file_closef.lo CC src/binding/f77/lib_libfmpich_la-file_deletef.lo CC src/binding/f77/lib_libfmpich_la-file_set_sizef.lo CC src/binding/f77/lib_libfmpich_la-file_get_sizef.lo CC src/binding/f77/lib_libfmpich_la-file_preallocatef.lo CC src/binding/f77/lib_libfmpich_la-file_get_groupf.lo CC src/binding/f77/lib_libfmpich_la-file_get_amodef.lo CC src/binding/f77/lib_libfmpich_la-file_set_infof.lo CC src/binding/f77/lib_libfmpich_la-file_get_infof.lo CC src/binding/f77/lib_libfmpich_la-file_set_viewf.lo CC src/binding/f77/lib_libfmpich_la-file_get_viewf.lo CC src/binding/f77/lib_libfmpich_la-file_read_atf.lo CC src/binding/f77/lib_libfmpich_la-file_read_at_allf.lo CC src/binding/f77/lib_libfmpich_la-file_write_atf.lo CC src/binding/f77/lib_libfmpich_la-file_write_at_allf.lo CC src/binding/f77/lib_libfmpich_la-file_iread_atf.lo CC src/binding/f77/lib_libfmpich_la-file_iwrite_atf.lo CC src/binding/f77/lib_libfmpich_la-file_readf.lo CC src/binding/f77/lib_libfmpich_la-file_read_allf.lo CC src/binding/f77/lib_libfmpich_la-file_writef.lo CC src/binding/f77/lib_libfmpich_la-file_write_allf.lo CC src/binding/f77/lib_libfmpich_la-file_ireadf.lo CC src/binding/f77/lib_libfmpich_la-file_iwritef.lo CC src/binding/f77/lib_libfmpich_la-file_seekf.lo CC src/binding/f77/lib_libfmpich_la-file_get_positionf.lo CC src/binding/f77/lib_libfmpich_la-file_get_byte_offsetf.lo CC src/binding/f77/lib_libfmpich_la-file_read_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_write_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_iread_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_iwrite_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_read_orderedf.lo CC src/binding/f77/lib_libfmpich_la-file_write_orderedf.lo CC src/binding/f77/lib_libfmpich_la-file_seek_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_get_position_sharedf.lo CC src/binding/f77/lib_libfmpich_la-file_read_at_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_read_at_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_write_at_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_write_at_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_read_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_read_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_write_all_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_write_all_endf.lo CC src/binding/f77/lib_libfmpich_la-file_read_ordered_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_read_ordered_endf.lo CC src/binding/f77/lib_libfmpich_la-file_write_ordered_beginf.lo CC src/binding/f77/lib_libfmpich_la-file_write_ordered_endf.lo CC src/binding/f77/lib_libfmpich_la-file_get_type_extentf.lo CC src/binding/f77/lib_libfmpich_la-register_datarepf.lo CC src/binding/f77/lib_libfmpich_la-file_set_atomicityf.lo CC src/binding/f77/lib_libfmpich_la-file_get_atomicityf.lo CC src/binding/f77/lib_libfmpich_la-file_syncf.lo CC src/binding/f77/lib_libfmpich_la-initf.lo CC src/binding/f77/lib_libfmpich_la-initthreadf.lo CC src/binding/f77/lib_libfmpich_la-pcontrolf.lo CC src/binding/f77/lib_libfmpich_la-addressf.lo CC src/binding/f77/lib_libfmpich_la-getaddressf.lo CC src/binding/f77/lib_libfmpich_la-wtimef.lo CC src/binding/f77/lib_libfmpich_la-wtickf.lo CC src/binding/f77/lib_libfmpich_la-keyval_createf.lo CC src/binding/f77/lib_libfmpich_la-dup_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-dup_comm_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_comm_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_comm_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-dup_win_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_win_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_win_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-dup_type_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_type_del_fnf.lo CC src/binding/f77/lib_libfmpich_la-null_type_copy_fnf.lo CC src/binding/f77/lib_libfmpich_la-statusf2c.lo rm -f src/binding/f90/mpifnoext.h CC src/binding/f77/lib_libfmpich_la-statusc2f.lo sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/f77/mpif.h > src/binding/f90/mpifnoext.h CC src/env/mpichversion.o cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpif77.bash src/env/mpif77 cp -p src/env/mpif90.bash src/env/mpif90 cp -p src/env/mpicxx.bash src/env/mpicxx GEN lib/libmpich.la CXXLD lib/libmpichcxx.la MOD src/binding/f90/mpi_constants.mod-stamp MOD src/binding/f90/mpi_sizeofs.mod-stamp CCLD lib/libfmpich.la MOD src/binding/f90/mpi_base.mod-stamp MOD src/binding/f90/mpi.mod-stamp FCLD lib/libmpichf90.la CCLD lib/libpmpich.la CCLD src/env/mpichversion gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' Making all in examples gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' CC cpi.o CCLD cpi gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' sh: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake install Executing: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake install sh: /opt/local/bin/gmake install-recursive gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' Making install in src/mpl gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c libmpl.la '/Users/barrysmith/Src/PETSc/arch-clang/lib' libtool: install: /usr/bin/install -c .libs/libmpl.1.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.1.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libmpl.1.dylib libmpl.dylib || { rm -f libmpl.dylib && ln -s libmpl.1.dylib libmpl.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libmpl.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.la libtool: install: /usr/bin/install -c .libs/libmpl.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.a gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making install in src/openpa gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making install in src gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' ../confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libopa.la '/Users/barrysmith/Src/PETSc/arch-clang/lib' libtool: install: /usr/bin/install -c .libs/libopa.1.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libopa.1.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libopa.1.dylib libopa.dylib || { rm -f libopa.dylib && ln -s libopa.1.dylib libopa.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libopa.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libopa.la libtool: install: /usr/bin/install -c .libs/libopa.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libopa.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libopa.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libopa.a ../confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/include' /usr/bin/install -c -m 644 opa_primitives.h opa_queue.h opa_util.h '/Users/barrysmith/Src/PETSc/arch-clang/include' ../confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/include' ../confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/include/primitives' /usr/bin/install -c -m 644 primitives/opa_by_lock.h primitives/opa_emulated.h primitives/opa_gcc_ia64.h primitives/opa_gcc_intel_32_64.h primitives/opa_gcc_intel_32_64_barrier.h primitives/opa_gcc_intel_32_64_ops.h primitives/opa_gcc_intel_32_64_p3.h primitives/opa_gcc_intel_32_64_p3barrier.h primitives/opa_gcc_intrinsics.h primitives/opa_gcc_ppc.h primitives/opa_gcc_sicortex.h primitives/opa_nt_intrinsics.h primitives/opa_sun_atomic_ops.h primitives/opa_unsafe.h '/Users/barrysmith/Src/PETSc/arch-clang/include/primitives' ../confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/include' /usr/bin/install -c -m 644 opa_config.h '/Users/barrysmith/Src/PETSc/arch-clang/include' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' Making install in test gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[4]: Nothing to be done for `install-exec-am'. gmake[4]: Nothing to be done for `install-data-am'. gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[4]: Nothing to be done for `install-exec-am'. confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/Users/barrysmith/Src/PETSc/arch-clang/lib/pkgconfig' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making install in src/mpi/romio gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[4]: Nothing to be done for `install-exec-am'. mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/Users/barrysmith/Src/PETSc/arch-clang/include' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' Making install in src/pm/hydra gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making install in ../../mpl gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' confdb/install-sh -c -d '/Users/barrysmith/Src/PETSc/arch-clang/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c libmpl.la '/Users/barrysmith/Src/PETSc/arch-clang/lib' libtool: install: /usr/bin/install -c .libs/libmpl.1.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.1.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libmpl.1.dylib libmpl.dylib || { rm -f libmpl.dylib && ln -s libmpl.1.dylib libmpl.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libmpl.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.la libtool: install: /usr/bin/install -c .libs/libmpl.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpl.a gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making install in tools/topo/hwloc/hwloc gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in src gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' /opt/local/bin/gmake install-exec-hook gmake[6]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' gmake[6]: Nothing to be done for `install-exec-hook'. gmake[6]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making install in include gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[5]: Nothing to be done for `install-exec-am'. gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[5]: Nothing to be done for `install-exec-am'. gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/bin' /bin/sh ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/Users/barrysmith/Src/PETSc/arch-clang/bin' libtool: install: /usr/bin/install -c .libs/hydra_persist /Users/barrysmith/Src/PETSc/arch-clang/bin/hydra_persist libtool: install: /usr/bin/install -c .libs/hydra_nameserver /Users/barrysmith/Src/PETSc/arch-clang/bin/hydra_nameserver libtool: install: /usr/bin/install -c .libs/hydra_pmi_proxy /Users/barrysmith/Src/PETSc/arch-clang/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c .libs/mpiexec.hydra /Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec.hydra /opt/local/bin/gmake install-exec-hook gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' if [ -x /Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec.hydra ] ; then \ cd /Users/barrysmith/Src/PETSc/arch-clang/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /Users/barrysmith/Src/PETSc/arch-clang/bin && ln -f -s mpiexec.hydra mpirun ; \ fi gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[4]: Nothing to be done for `install-data-am'. gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making install in . gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c lib/libmpich.la lib/libpmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la '/Users/barrysmith/Src/PETSc/arch-clang/lib' libtool: install: /usr/bin/install -c lib/.libs/libmpich.10.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpich.10.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libmpich.10.dylib libmpich.dylib || { rm -f libmpich.dylib && ln -s libmpich.10.dylib libmpich.dylib; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpich.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpich.la libtool: install: /usr/bin/install -c lib/.libs/libpmpich.10.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libpmpich.10.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libpmpich.10.dylib libpmpich.dylib || { rm -f libpmpich.dylib && ln -s libpmpich.10.dylib libpmpich.dylib; }; }) libtool: install: /usr/bin/install -c lib/.libs/libpmpich.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libpmpich.la libtool: install: /usr/bin/install -c lib/.libs/libmpichcxx.10.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichcxx.10.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libmpichcxx.10.dylib libmpichcxx.dylib || { rm -f libmpichcxx.dylib && ln -s libmpichcxx.10.dylib libmpichcxx.dylib; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpichcxx.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichcxx.la libtool: install: /usr/bin/install -c lib/.libs/libfmpich.10.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libfmpich.10.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libfmpich.10.dylib libfmpich.dylib || { rm -f libfmpich.dylib && ln -s libfmpich.10.dylib libfmpich.dylib; }; }) libtool: install: /usr/bin/install -c lib/.libs/libfmpich.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libfmpich.la libtool: install: /usr/bin/install -c lib/.libs/libmpichf90.10.dylib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichf90.10.dylib libtool: install: (cd /Users/barrysmith/Src/PETSc/arch-clang/lib && { ln -s -f libmpichf90.10.dylib libmpichf90.dylib || { rm -f libmpichf90.dylib && ln -s libmpichf90.10.dylib libmpichf90.dylib; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpichf90.lai /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichf90.la libtool: install: /usr/bin/install -c lib/.libs/libmpich.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpich.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpich.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpich.a libtool: install: /usr/bin/install -c lib/.libs/libpmpich.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libpmpich.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libpmpich.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libpmpich.a libtool: install: /usr/bin/install -c lib/.libs/libmpichcxx.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichcxx.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichcxx.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichcxx.a libtool: install: /usr/bin/install -c lib/.libs/libfmpich.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libfmpich.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libfmpich.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libfmpich.a libtool: install: /usr/bin/install -c lib/.libs/libmpichf90.a /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichf90.a libtool: install: chmod 644 /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichf90.a libtool: install: ranlib /Users/barrysmith/Src/PETSc/arch-clang/lib/libmpichf90.a mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/bin' /bin/sh ./libtool --mode=install /usr/bin/install -c src/env/mpichversion '/Users/barrysmith/Src/PETSc/arch-clang/bin' libtool: install: /usr/bin/install -c src/env/mpichversion /Users/barrysmith/Src/PETSc/arch-clang/bin/mpichversion mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpif77 src/env/mpif90 src/env/mpicxx '/Users/barrysmith/Src/PETSc/arch-clang/bin' mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/etc' /usr/bin/install -c -m 644 src/env/mpicc.conf src/env/mpif77.conf src/env/mpif90.conf src/env/mpicxx.conf '/Users/barrysmith/Src/PETSc/arch-clang/etc' /opt/local/bin/gmake install-exec-hook gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' for e in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx \ /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif77 /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 ; do \ if test -e ${e} ; then \ sed -e 's|^prefix=.*|prefix=/Users/barrysmith/Src/PETSc/arch-clang|g' \ -e 's|^exec_prefix=.*|exec_prefix=/Users/barrysmith/Src/PETSc/arch-clang|g' \ -e 's|^sysconfdir=.*|sysconfdir=/Users/barrysmith/Src/PETSc/arch-clang/etc|g' \ -e 's|^includdir=.*|includedir=/Users/barrysmith/Src/PETSc/arch-clang/include|g' \ -e 's|^libdir=.*|libdir=/Users/barrysmith/Src/PETSc/arch-clang/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx ; then \ cd /Users/barrysmith/Src/PETSc/arch-clang/bin && ln -f -s mpicxx mpic++ ; fi gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' /usr/bin/install -c -m 644 mpicc.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpif90.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/mpif90.1 /usr/bin/install -c -m 644 MPIX_Comm_group_failed.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPIX_Comm_group_failed.3 /usr/bin/install -c -m 644 MPIX_Comm_reenable_anysource.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPIX_Comm_reenable_anysource.3 /usr/bin/install -c -m 644 MPIX_Comm_remote_group_failed.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPIX_Comm_remote_group_failed.3 /usr/bin/install -c -m 644 MPI_Abort.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 MPI_Comm_connect.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_connect.3 /usr/bin/install -c -m 644 MPI_Comm_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_create.3 /usr/bin/install -c -m 644 MPI_Comm_create_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_create_group.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_create_group.3 /usr/bin/install -c -m 644 MPI_Comm_create_keyval.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_create_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_delete_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_delete_attr.3 /usr/bin/install -c -m 644 MPI_Comm_disconnect.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_disconnect.3 /usr/bin/install -c -m 644 MPI_Comm_dup.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_dup.3 /usr/bin/install -c -m 644 MPI_Comm_dup_with_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_dup_with_info.3 /usr/bin/install -c -m 644 MPI_Comm_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_free.3 /usr/bin/install -c -m 644 MPI_Comm_free_keyval.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_free_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_get_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_get_attr.3 /usr/bin/install -c -m 644 MPI_Comm_get_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_get_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_get_info.3 /usr/bin/install -c -m 644 MPI_Comm_get_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_get_name.3 /usr/bin/install -c -m 644 MPI_Comm_get_parent.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_get_parent.3 /usr/bin/install -c -m 644 MPI_Comm_group.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_group.3 /usr/bin/install -c -m 644 MPI_Comm_idup.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_idup.3 /usr/bin/install -c -m 644 MPI_Comm_join.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_join.3 /usr/bin/install -c -m 644 MPI_Comm_rank.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_rank.3 /usr/bin/install -c -m 644 MPI_Comm_remote_group.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_remote_group.3 /usr/bin/install -c -m 644 MPI_Comm_remote_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_remote_size.3 /usr/bin/install -c -m 644 MPI_Comm_set_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_set_attr.3 /usr/bin/install -c -m 644 MPI_Comm_set_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_set_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_set_info.3 /usr/bin/install -c -m 644 MPI_Comm_set_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_set_name.3 /usr/bin/install -c -m 644 MPI_Comm_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_size.3 /usr/bin/install -c -m 644 MPI_Comm_spawn.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_spawn.3 /usr/bin/install -c -m 644 MPI_Comm_spawn_multiple.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_spawn_multiple.3 /usr/bin/install -c -m 644 MPI_Comm_split.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_split.3 /usr/bin/install -c -m 644 MPI_Comm_split_type.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_split_type.3 /usr/bin/install -c -m 644 MPI_Comm_test_inter.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Comm_test_inter.3 /usr/bin/install -c -m 644 MPI_Compare_and_swap.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Compare_and_swap.3 /usr/bin/install -c -m 644 MPI_Dims_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Dims_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Dist_graph_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create_adjacent.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Dist_graph_create_adjacent.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Dist_graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors_count.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Dist_graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Errhandler_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Errhandler_create.3 /usr/bin/install -c -m 644 MPI_Errhandler_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Errhandler_free.3 /usr/bin/install -c -m 644 MPI_Errhandler_get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Errhandler_get.3 /usr/bin/install -c -m 644 MPI_Errhandler_set.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Errhandler_set.3 /usr/bin/install -c -m 644 MPI_Error_class.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Error_class.3 /usr/bin/install -c -m 644 MPI_Error_string.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Error_string.3 /usr/bin/install -c -m 644 MPI_Exscan.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Exscan.3 /usr/bin/install -c -m 644 MPI_Fetch_and_op.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Fetch_and_op.3 /usr/bin/install -c -m 644 MPI_File_c2f.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_c2f.3 /usr/bin/install -c -m 644 MPI_File_call_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_call_errhandler.3 /usr/bin/install -c -m 644 MPI_File_close.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_close.3 /usr/bin/install -c -m 644 MPI_File_create_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_create_errhandler.3 /usr/bin/install -c -m 644 MPI_File_delete.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_delete.3 /usr/bin/install -c -m 644 MPI_File_f2c.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_f2c.3 /usr/bin/install -c -m 644 MPI_File_get_amode.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_amode.3 /usr/bin/install -c -m 644 MPI_File_get_atomicity.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_atomicity.3 /usr/bin/install -c -m 644 MPI_File_get_byte_offset.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_byte_offset.3 /usr/bin/install -c -m 644 MPI_File_get_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_errhandler.3 /usr/bin/install -c -m 644 MPI_File_get_group.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_group.3 /usr/bin/install -c -m 644 MPI_File_get_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_info.3 /usr/bin/install -c -m 644 MPI_File_get_position.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_position.3 /usr/bin/install -c -m 644 MPI_File_get_position_shared.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_position_shared.3 /usr/bin/install -c -m 644 MPI_File_get_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_size.3 /usr/bin/install -c -m 644 MPI_File_get_type_extent.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_type_extent.3 /usr/bin/install -c -m 644 MPI_File_get_view.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_get_view.3 /usr/bin/install -c -m 644 MPI_File_iread.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_iread.3 /usr/bin/install -c -m 644 MPI_File_iread_at.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_iread_at.3 /usr/bin/install -c -m 644 MPI_File_iread_shared.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_iread_shared.3 /usr/bin/install -c -m 644 MPI_File_iwrite.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_iwrite.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_iwrite_at.3 /usr/bin/install -c -m 644 MPI_File_iwrite_shared.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_iwrite_shared.3 /usr/bin/install -c -m 644 MPI_File_open.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_open.3 /usr/bin/install -c -m 644 MPI_File_preallocate.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_preallocate.3 /usr/bin/install -c -m 644 MPI_File_read.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read.3 /usr/bin/install -c -m 644 MPI_File_read_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_all.3 /usr/bin/install -c -m 644 MPI_File_read_all_begin.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_all_end.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_at.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_at.3 /usr/bin/install -c -m 644 MPI_File_read_at_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_at_all.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_begin.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_end.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_ordered.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_ordered.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_begin.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_end.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_read_shared.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_read_shared.3 /usr/bin/install -c -m 644 MPI_File_seek.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_seek.3 /usr/bin/install -c -m 644 MPI_File_seek_shared.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_seek_shared.3 /usr/bin/install -c -m 644 MPI_File_set_atomicity.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_set_atomicity.3 /usr/bin/install -c -m 644 MPI_File_set_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_all_end.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_at.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_at.3 /usr/bin/install -c -m 644 MPI_File_write_at_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_at_all.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_begin.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_end.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_ordered.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_ordered.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_begin.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_end.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_write_shared.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_File_write_shared.3 /usr/bin/install -c -m 644 MPI_Finalize.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Finalize.3 /usr/bin/install -c -m 644 MPI_Finalized.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Finalized.3 /usr/bin/install -c -m 644 MPI_Free_mem.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Free_mem.3 /usr/bin/install -c -m 644 MPI_Gather.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Gather.3 /usr/bin/install -c -m 644 MPI_Gatherv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Gatherv.3 /usr/bin/install -c -m 644 MPI_Get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get.3 /usr/bin/install -c -m 644 MPI_Get_accumulate.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_accumulate.3 /usr/bin/install -c -m 644 MPI_Get_address.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_address.3 /usr/bin/install -c -m 644 MPI_Get_count.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_count.3 /usr/bin/install -c -m 644 MPI_Get_elements.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_elements.3 /usr/bin/install -c -m 644 MPI_Get_elements_x.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_elements_x.3 /usr/bin/install -c -m 644 MPI_Get_library_version.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_library_version.3 /usr/bin/install -c -m 644 MPI_Get_processor_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_processor_name.3 /usr/bin/install -c -m 644 MPI_Get_version.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Get_version.3 /usr/bin/install -c -m 644 MPI_Graph_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Graph_create.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Graphdims_get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_delete.3 /usr/bin/install -c -m 644 MPI_Info_dup.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_dup.3 /usr/bin/install -c -m 644 MPI_Info_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_free.3 /usr/bin/install -c -m 644 MPI_Info_get.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_get.3 /usr/bin/install -c -m 644 MPI_Info_get_nkeys.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_get_nkeys.3 /usr/bin/install -c -m 644 MPI_Info_get_nthkey.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_get_nthkey.3 /usr/bin/install -c -m 644 MPI_Info_get_valuelen.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_get_valuelen.3 /usr/bin/install -c -m 644 MPI_Info_set.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Info_set.3 /usr/bin/install -c -m 644 MPI_Init.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Init.3 /usr/bin/install -c -m 644 MPI_Init_thread.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Init_thread.3 /usr/bin/install -c -m 644 MPI_Initialized.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Initialized.3 /usr/bin/install -c -m 644 MPI_Intercomm_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Intercomm_create.3 /usr/bin/install -c -m 644 MPI_Intercomm_merge.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Intercomm_merge.3 /usr/bin/install -c -m 644 MPI_Iprobe.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iprobe.3 /usr/bin/install -c -m 644 MPI_Irecv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Irecv.3 /usr/bin/install -c -m 644 MPI_Ireduce.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ireduce.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ireduce_scatter.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter_block.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ireduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Irsend.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Irsend.3 /usr/bin/install -c -m 644 MPI_Is_thread_main.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Is_thread_main.3 /usr/bin/install -c -m 644 MPI_Iscan.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iscan.3 /usr/bin/install -c -m 644 MPI_Iscatter.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iscatter.3 /usr/bin/install -c -m 644 MPI_Iscatterv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Iscatterv.3 /usr/bin/install -c -m 644 MPI_Isend.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Isend.3 /usr/bin/install -c -m 644 MPI_Issend.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Issend.3 /usr/bin/install -c -m 644 MPI_Keyval_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Keyval_create.3 /usr/bin/install -c -m 644 MPI_Keyval_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Keyval_free.3 /usr/bin/install -c -m 644 MPI_Lookup_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Lookup_name.3 /usr/bin/install -c -m 644 MPI_Mprobe.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Mprobe.3 /usr/bin/install -c -m 644 MPI_Mrecv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Mrecv.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgather.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Pack.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Probe.3 /usr/bin/install -c -m 644 MPI_Publish_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Publish_name.3 /usr/bin/install -c -m 644 MPI_Put.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Put.3 /usr/bin/install -c -m 644 MPI_Query_thread.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Query_thread.3 /usr/bin/install -c -m 644 MPI_Raccumulate.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Raccumulate.3 /usr/bin/install -c -m 644 MPI_Recv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Recv.3 /usr/bin/install -c -m 644 MPI_Recv_init.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Recv_init.3 /usr/bin/install -c -m 644 MPI_Reduce.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Reduce.3 /usr/bin/install -c -m 644 MPI_Reduce_local.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPI_Scan.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_category_get_pvars.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_cvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_num.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_cvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_alloc.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_cvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_cvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_cvar_read.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_cvar_read.3 /usr/bin/install -c -m 644 MPI_T_cvar_write.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_cvar_write.3 /usr/bin/install -c -m 644 MPI_T_enum_get_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_enum_get_info.3 /usr/bin/install -c -m 644 MPI_T_enum_get_item.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_enum_get_item.3 /usr/bin/install -c -m 644 MPI_T_finalize.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_finalize.3 /usr/bin/install -c -m 644 MPI_T_init_thread.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_init_thread.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_num.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_alloc.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_read.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_read.3 /usr/bin/install -c -m 644 MPI_T_pvar_readreset.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_readreset.3 /usr/bin/install -c -m 644 MPI_T_pvar_reset.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_reset.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_session_create.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_session_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_start.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_start.3 /usr/bin/install -c -m 644 MPI_T_pvar_stop.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_stop.3 /usr/bin/install -c -m 644 MPI_T_pvar_write.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_T_pvar_write.3 /usr/bin/install -c -m 644 MPI_Test.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Test.3 /usr/bin/install -c -m 644 MPI_Test_cancelled.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Test_cancelled.3 /usr/bin/install -c -m 644 MPI_Testall.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Testall.3 /usr/bin/install -c -m 644 MPI_Testany.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Testany.3 /usr/bin/install -c -m 644 MPI_Testsome.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Testsome.3 /usr/bin/install -c -m 644 MPI_Topo_test.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Topo_test.3 /usr/bin/install -c -m 644 MPI_Type_commit.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_commit.3 /usr/bin/install -c -m 644 MPI_Type_contiguous.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_contiguous.3 /usr/bin/install -c -m 644 MPI_Type_create_darray.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_darray.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed_block.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_hindexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_hvector.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_hvector.3 /usr/bin/install -c -m 644 MPI_Type_create_indexed_block.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_indexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_keyval.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_keyval.3 /usr/bin/install -c -m 644 MPI_Type_create_resized.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_resized.3 /usr/bin/install -c -m 644 MPI_Type_create_struct.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_struct.3 /usr/bin/install -c -m 644 MPI_Type_create_subarray.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_create_subarray.3 /usr/bin/install -c -m 644 MPI_Type_delete_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_delete_attr.3 /usr/bin/install -c -m 644 MPI_Type_dup.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_dup.3 /usr/bin/install -c -m 644 MPI_Type_extent.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_extent.3 /usr/bin/install -c -m 644 MPI_Type_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_free.3 /usr/bin/install -c -m 644 MPI_Type_free_keyval.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_free_keyval.3 /usr/bin/install -c -m 644 MPI_Type_get_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_attr.3 /usr/bin/install -c -m 644 MPI_Type_get_contents.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_contents.3 /usr/bin/install -c -m 644 MPI_Type_get_envelope.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_envelope.3 /usr/bin/install -c -m 644 MPI_Type_get_extent.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_extent_x.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_get_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_name.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_true_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent_x.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_get_true_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_hindexed.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_hvector.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_hvector.3 /usr/bin/install -c -m 644 MPI_Type_indexed.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_indexed.3 /usr/bin/install -c -m 644 MPI_Type_lb.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_lb.3 /usr/bin/install -c -m 644 MPI_Type_match_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_match_size.3 /usr/bin/install -c -m 644 MPI_Type_set_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_set_attr.3 /usr/bin/install -c -m 644 MPI_Type_set_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_set_name.3 /usr/bin/install -c -m 644 MPI_Type_size.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_size.3 /usr/bin/install -c -m 644 MPI_Type_size_x.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_size_x.3 /usr/bin/install -c -m 644 MPI_Type_struct.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_struct.3 /usr/bin/install -c -m 644 MPI_Type_ub.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_ub.3 /usr/bin/install -c -m 644 MPI_Type_vector.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Type_vector.3 /usr/bin/install -c -m 644 MPI_Unpack.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Unpack.3 /usr/bin/install -c -m 644 MPI_Unpack_external.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Unpack_external.3 /usr/bin/install -c -m 644 MPI_Unpublish_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Unpublish_name.3 /usr/bin/install -c -m 644 MPI_Wait.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Wait.3 /usr/bin/install -c -m 644 MPI_Waitall.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Waitall.3 /usr/bin/install -c -m 644 MPI_Waitany.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Waitany.3 /usr/bin/install -c -m 644 MPI_Waitsome.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Waitsome.3 /usr/bin/install -c -m 644 MPI_Win_allocate.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_allocate.3 /usr/bin/install -c -m 644 MPI_Win_allocate_shared.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_allocate_shared.3 /usr/bin/install -c -m 644 MPI_Win_attach.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_attach.3 /usr/bin/install -c -m 644 MPI_Win_call_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_complete.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_complete.3 /usr/bin/install -c -m 644 MPI_Win_create.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_create.3 /usr/bin/install -c -m 644 MPI_Win_create_dynamic.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_create_dynamic.3 /usr/bin/install -c -m 644 MPI_Win_create_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_create_keyval.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_create_keyval.3 /usr/bin/install -c -m 644 MPI_Win_delete_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_delete_attr.3 /usr/bin/install -c -m 644 MPI_Win_detach.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_detach.3 /usr/bin/install -c -m 644 MPI_Win_fence.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_fence.3 /usr/bin/install -c -m 644 MPI_Win_flush.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_flush.3 /usr/bin/install -c -m 644 MPI_Win_flush_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_flush_all.3 /usr/bin/install -c -m 644 MPI_Win_flush_local.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_flush_local.3 /usr/bin/install -c -m 644 MPI_Win_flush_local_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_flush_local_all.3 /usr/bin/install -c -m 644 MPI_Win_free.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_free.3 /usr/bin/install -c -m 644 MPI_Win_free_keyval.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_free_keyval.3 /usr/bin/install -c -m 644 MPI_Win_get_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_get_attr.3 /usr/bin/install -c -m 644 MPI_Win_get_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_get_group.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_get_group.3 /usr/bin/install -c -m 644 MPI_Win_get_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_get_info.3 /usr/bin/install -c -m 644 MPI_Win_get_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_get_name.3 /usr/bin/install -c -m 644 MPI_Win_lock.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_lock.3 /usr/bin/install -c -m 644 MPI_Win_lock_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_lock_all.3 /usr/bin/install -c -m 644 MPI_Win_post.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_post.3 /usr/bin/install -c -m 644 MPI_Win_set_attr.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_set_attr.3 /usr/bin/install -c -m 644 MPI_Win_set_errhandler.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_set_info.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_set_info.3 /usr/bin/install -c -m 644 MPI_Win_set_name.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_set_name.3 /usr/bin/install -c -m 644 MPI_Win_shared_query.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_shared_query.3 /usr/bin/install -c -m 644 MPI_Win_start.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_start.3 /usr/bin/install -c -m 644 MPI_Win_sync.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_sync.3 /usr/bin/install -c -m 644 MPI_Win_test.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_test.3 /usr/bin/install -c -m 644 MPI_Win_unlock.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_unlock.3 /usr/bin/install -c -m 644 MPI_Win_unlock_all.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_unlock_all.3 /usr/bin/install -c -m 644 MPI_Win_wait.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Win_wait.3 /usr/bin/install -c -m 644 MPI_Wtick.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Wtick.3 /usr/bin/install -c -m 644 MPI_Wtime.3 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man3/MPI_Wtime.3 if [ ! -e /Users/barrysmith/Src/PETSc/arch-clang/share/doc/mpich ] ; then mkdir -p /Users/barrysmith/Src/PETSc/arch-clang/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /Users/barrysmith/Src/PETSc/arch-clang/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /Users/barrysmith/Src/PETSc/arch-clang/share/doc/mpich/install.pdf ; fi if [ -s ./doc/smpd/smpd_pmi.pdf ] ; then /usr/bin/install -c -m 644 ./doc/smpd/smpd_pmi.pdf /Users/barrysmith/Src/PETSc/arch-clang/share/doc/mpich/smpd_pmi.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /Users/barrysmith/Src/PETSc/arch-clang/share/doc/mpich/logging.pdf ; fi mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/include' /usr/bin/install -c -m 644 src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod '/Users/barrysmith/Src/PETSc/arch-clang/include' mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/f77/mpif.h src/include/mpi.h '/Users/barrysmith/Src/PETSc/arch-clang/include' mkdir -p '/Users/barrysmith/Src/PETSc/arch-clang/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/Users/barrysmith/Src/PETSc/arch-clang/lib/pkgconfig' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' Making install in examples gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' gmake[3]: Nothing to be done for `install-exec-am'. gmake[3]: Nothing to be done for `install-data-am'. gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' sh: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake clean Executing: cd /Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake clean sh: Making clean in src/mpl gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making clean in src/openpa gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making clean in src gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/src' Making clean in test gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' rm -rf .libs _libs rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/openpa' Making clean in src/mpi/romio gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' rm -rf .libs _libs rm -rf adio/ad_bg/.libs adio/ad_bg/_libs rm -rf adio/ad_bgl/.libs adio/ad_bgl/_libs rm -rf adio/ad_bglockless/.libs adio/ad_bglockless/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la libpromio.la" || rm -f libromio.la libpromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_bg/*.o rm -f adio/ad_bg/*.lo rm -f adio/ad_bgl/*.o rm -f adio/ad_bgl/*.lo rm -f adio/ad_bglockless/*.o rm -f adio/ad_bglockless/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpi/romio' Making clean in src/pm/hydra gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making clean in ../../mpl gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/mpl' Making clean in tools/topo/hwloc/hwloc gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in src gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making clean in include gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making clean in . gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' rm -f src/env/mpichversion test -z "src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod" || rm -f src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod test -z "lib/libmpich.la lib/libpmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la" || rm -f lib/libmpich.la lib/libpmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/f77/.libs src/binding/f77/_libs rm -rf src/binding/f90/.libs src/binding/f90/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf 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src/mpid/common/datatype/dataloop/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/sock/poll/.libs src/mpid/common/sock/poll/_libs rm -rf src/mpid/common/thread/.libs src/mpid/common/thread/_libs rm -rf src/mpid/pamid/src/.libs src/mpid/pamid/src/_libs rm -rf src/mpid/pamid/src/coll/.libs src/mpid/pamid/src/coll/_libs rm -rf src/mpid/pamid/src/coll/allgather/.libs src/mpid/pamid/src/coll/allgather/_libs rm -rf src/mpid/pamid/src/coll/allgatherv/.libs src/mpid/pamid/src/coll/allgatherv/_libs rm -rf src/mpid/pamid/src/coll/allreduce/.libs src/mpid/pamid/src/coll/allreduce/_libs rm -rf src/mpid/pamid/src/coll/alltoall/.libs src/mpid/pamid/src/coll/alltoall/_libs rm -rf src/mpid/pamid/src/coll/alltoallv/.libs src/mpid/pamid/src/coll/alltoallv/_libs rm -rf src/mpid/pamid/src/coll/barrier/.libs src/mpid/pamid/src/coll/barrier/_libs rm -rf src/mpid/pamid/src/coll/bcast/.libs src/mpid/pamid/src/coll/bcast/_libs rm -rf src/mpid/pamid/src/coll/gather/.libs src/mpid/pamid/src/coll/gather/_libs rm -rf src/mpid/pamid/src/coll/gatherv/.libs src/mpid/pamid/src/coll/gatherv/_libs rm -rf src/mpid/pamid/src/coll/reduce/.libs src/mpid/pamid/src/coll/reduce/_libs rm -rf src/mpid/pamid/src/coll/scan/.libs src/mpid/pamid/src/coll/scan/_libs rm -rf src/mpid/pamid/src/coll/scatter/.libs src/mpid/pamid/src/coll/scatter/_libs rm -rf src/mpid/pamid/src/coll/scatterv/.libs src/mpid/pamid/src/coll/scatterv/_libs rm -rf src/mpid/pamid/src/comm/.libs src/mpid/pamid/src/comm/_libs rm -rf src/mpid/pamid/src/dyntask/.libs src/mpid/pamid/src/dyntask/_libs rm -rf src/mpid/pamid/src/misc/.libs src/mpid/pamid/src/misc/_libs rm -rf src/mpid/pamid/src/mpix/.libs src/mpid/pamid/src/mpix/_libs rm -rf src/mpid/pamid/src/onesided/.libs src/mpid/pamid/src/onesided/_libs rm -rf src/mpid/pamid/src/pamix/.libs src/mpid/pamid/src/pamix/_libs rm -rf src/mpid/pamid/src/pt2pt/.libs src/mpid/pamid/src/pt2pt/_libs rm -rf src/mpid/pamid/src/pt2pt/persistent/.libs src/mpid/pamid/src/pt2pt/persistent/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/mpd/.libs src/nameserv/mpd/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pm/smpd/.libs src/pm/smpd/_libs rm -rf src/pm/smpd/sock/poll/.libs src/pm/smpd/sock/poll/_libs rm -rf src/pmi/pmi2/poe/.libs src/pmi/pmi2/poe/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/pmi/smpd/.libs src/pmi/smpd/_libs rm -rf src/util/dbg/.libs src/util/dbg/_libs rm -rf src/util/instrm/.libs src/util/instrm/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/msgs/.libs src/util/msgs/_libs rm -rf src/util/other/.libs src/util/other/_libs rm -rf src/util/param/.libs src/util/param/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs rm -rf src/util/thread/.libs src/util/thread/_libs ( cd test && /opt/local/bin/gmake clean ) gmake[2]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' Making clean in mpi gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' Making clean in util gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/util' rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/util' Making clean in attr gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/attr' Making clean in basic gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/basic' Making clean in datatype gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms" || rm -f blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/datatype' Making clean in coll gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/coll' Making clean in comm gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_info rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/comm' Making clean in errhan gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "adderr commcall errfatal predef_eh" || rm -f adderr commcall errfatal predef_eh rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errhan' Making clean in group gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/group' Making clean in info gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoenv rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/info' Making clean in init gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/init' Making clean in pt2pt gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/pt2pt' Making clean in rma gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example win_info pscw_ordering mutex_bench mutex_bench_shared" || rm -f allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example win_info pscw_ordering mutex_bench mutex_bench_shared rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/rma' Making clean in topo gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll" || rm -f cartmap1 cartzero 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throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o gmake[6]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx/errhan' gmake[6]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[6]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx' gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "badport unpub lookup_name" || rm -f badport unpub lookup_name rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/errors/spawn' gmake[5]: Entering 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`/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/manual/mpi_t' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/manual' test -z "summary.xml summary.tap test-port" || rm -f summary.xml summary.tap test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/manual' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/manual' Making clean in perf gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/perf' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/perf' Making clean in mpi_t gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpi_t_str" || rm -f mpi_t_str rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/mpi_t' Making clean in io gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr 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typeattr3f rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/attr' Making clean in datatype gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/datatype' Making clean in coll gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/coll' Making clean in pt2pt gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf statusesf greqf mprobef" || rm -f allpairf statusesf greqf mprobef rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/pt2pt' Making clean in info gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/info' Making clean in init gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/init' Making clean in comm gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/comm' Making clean in topo gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/topo' Making clean in ext gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/ext' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/spawn' Making clean in io gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/io' Making clean in rma gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77/rma' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f77' Making clean in f90 gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' Making clean in util gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/util' rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/util' Making clean in timer gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/timer' Making clean in attr gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/attr' Making clean in coll gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/coll' Making clean in datatype gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/datatype' Making clean in pt2pt gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf90 statusesf90 greqf90 mprobef90" || rm -f allpairf90 statusesf90 greqf90 mprobef90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/pt2pt' Making clean in info gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/info' Making clean in comm gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/comm' Making clean in topo gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/topo' Making clean in ext gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/ext' Making clean in init gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/init' Making clean in misc gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/misc' Making clean in f90types gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/f90types' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "createf90types" || rm -f createf90types rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/f90types' Making clean in rma gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/rma' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/spawn' Making clean in io gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90/io' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/f90' Making clean in cxx gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' Making clean in util gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/util' rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/util' Making clean in attr gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/attr' Making clean in pt2pt gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/pt2pt' Making clean in init gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/init' Making clean in info gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/info' Making clean in comm gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/comm' Making clean in coll gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx" || rm -f arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/coll' Making clean in datatype gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "packsizex typecntsx typenamex typemiscx" || rm -f packsizex typecntsx typenamex typemiscx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/datatype' Making clean in errhan gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/errhan' Making clean in io gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/io' Making clean in rma gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/rma' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/spawn' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' Making clean in threads gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' Making clean in util gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/util' rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/util' Making clean in pt2pt gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/pt2pt' Making clean in comm gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/comm' Making clean in init gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "initth" || rm -f initth rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/init' Making clean in spawn gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads/spawn' gmake[5]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/threads' Making clean in spawn gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns rm -f *.o gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi/spawn' Making clean in . gmake[4]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[4]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/mpi' Making clean in commands gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test/commands' Making clean in . gmake[3]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' gmake[2]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/test' rm -f /Users/barrysmith/Src/PETSc/arch-clang/bin/mpic++ test -z "" || rm -f test -z "" || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/f77/*.o rm -f src/binding/f77/*.lo rm -f src/binding/f90/*.o rm -f src/binding/f90/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mx/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/newmad/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/scif/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/common/datatype/*.o rm -f src/mpid/common/datatype/*.lo rm -f src/mpid/common/datatype/dataloop/*.o rm -f src/mpid/common/datatype/dataloop/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/sock/poll/*.o rm -f src/mpid/common/sock/poll/*.lo rm -f src/mpid/common/thread/*.o rm -f src/mpid/common/thread/*.lo rm -f src/mpid/pamid/src/*.o rm -f src/mpid/pamid/src/*.lo rm -f src/mpid/pamid/src/coll/*.o rm -f src/mpid/pamid/src/coll/*.lo rm -f src/mpid/pamid/src/coll/allgather/*.o rm -f src/mpid/pamid/src/coll/allgather/*.lo rm -f src/mpid/pamid/src/coll/allgatherv/*.o rm -f src/mpid/pamid/src/coll/allgatherv/*.lo rm -f src/mpid/pamid/src/coll/allreduce/*.o rm -f src/mpid/pamid/src/coll/allreduce/*.lo rm -f src/mpid/pamid/src/coll/alltoall/*.o rm -f src/mpid/pamid/src/coll/alltoall/*.lo rm -f src/mpid/pamid/src/coll/alltoallv/*.o rm -f src/mpid/pamid/src/coll/alltoallv/*.lo rm -f src/mpid/pamid/src/coll/barrier/*.o rm -f src/mpid/pamid/src/coll/barrier/*.lo rm -f src/mpid/pamid/src/coll/bcast/*.o rm -f src/mpid/pamid/src/coll/bcast/*.lo rm -f src/mpid/pamid/src/coll/gather/*.o rm -f src/mpid/pamid/src/coll/gather/*.lo rm -f src/mpid/pamid/src/coll/gatherv/*.o rm -f src/mpid/pamid/src/coll/gatherv/*.lo rm -f src/mpid/pamid/src/coll/reduce/*.o rm -f src/mpid/pamid/src/coll/reduce/*.lo rm -f src/mpid/pamid/src/coll/scan/*.o rm -f src/mpid/pamid/src/coll/scan/*.lo rm -f src/mpid/pamid/src/coll/scatter/*.o rm -f src/mpid/pamid/src/coll/scatter/*.lo rm -f src/mpid/pamid/src/coll/scatterv/*.o rm -f src/mpid/pamid/src/coll/scatterv/*.lo rm -f src/mpid/pamid/src/comm/*.o rm -f src/mpid/pamid/src/comm/*.lo rm -f src/mpid/pamid/src/dyntask/*.o rm -f src/mpid/pamid/src/dyntask/*.lo rm -f src/mpid/pamid/src/misc/*.o rm -f src/mpid/pamid/src/misc/*.lo rm -f src/mpid/pamid/src/mpix/*.o rm -f src/mpid/pamid/src/mpix/*.lo rm -f src/mpid/pamid/src/onesided/*.o rm -f src/mpid/pamid/src/onesided/*.lo rm -f src/mpid/pamid/src/pamix/*.o rm -f src/mpid/pamid/src/pamix/*.lo rm -f src/mpid/pamid/src/pt2pt/*.o rm -f src/mpid/pamid/src/pt2pt/*.lo rm -f src/mpid/pamid/src/pt2pt/persistent/*.o rm -f src/mpid/pamid/src/pt2pt/persistent/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/mpd/*.o rm -f src/nameserv/mpd/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/smpd/*.o rm -f src/pm/smpd/*.lo rm -f src/pm/smpd/sock/poll/*.o rm -f src/pm/smpd/sock/poll/*.lo rm -f src/pm/util/*.o rm -f src/pmi/pmi2/poe/*.o rm -f src/pmi/pmi2/poe/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/pmi/smpd/*.o rm -f src/pmi/smpd/*.lo rm -f src/util/dbg/*.o rm -f src/util/dbg/*.lo rm -f src/util/instrm/*.o rm -f src/util/instrm/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/msgs/*.o rm -f src/util/msgs/*.lo rm -f src/util/other/*.o rm -f src/util/other/*.lo rm -f src/util/param/*.o rm -f src/util/param/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f src/util/thread/*.o rm -f src/util/thread/*.lo rm -f *.lo gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106' Making clean in examples gmake[1]: Entering directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo gmake[1]: Leaving directory `/Users/barrysmith/Src/PETSc/externalpackages/mpich-3.0.4-106/examples' Deleting "CC" Deleting "CXX" Deleting "FC" ================================================================================ TEST printEnvVariables from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1503) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1503) **** printenv **** VERSIONER_PYTHON_PREFER_32_BIT=no MATLABPATH=/pathlib/examples/Matlab/m-files:/pathlib/examples/Matlab:/pathlib_petsc:/Users/barrysmith/Src/petsc/bin/matlab:/Users/barrysmith/Src/petsc/bin/matlab/classes: TERM_PROGRAM_VERSION=309 LOGNAME=barrysmith USER=barrysmith PATH=/opt/local/bin:/opt/local/sbin:/Users/barrysmith/Src/petsc/bin:/Developer/NVIDIA/CUDA-5.5/bin/:/Users/barrysmith/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/Users/barrysmith/Src/petsc-dev/bin:/Users/barrysmith/bin:/usr/local/texlive/2012/bin/x86_64-darwin/:/usr/X11R6/bin:/opt/local/bin:/usr/local/texlive/2012/bin/x86_64-darwin:/bin:/usr/X11R6/bin:/opt/local/bin:/Users/barrysmith/Src/pyjs/bin HOME=/Users/barrysmith DISPLAY=/tmp/launch-huSisx/org.macosforge.xquartz:0 TERM_PROGRAM=Apple_Terminal LANG=en_US.UTF-8 TERM=xterm-256color SHELL=/bin/bash VERSIONER_PYTHON_VERSION=2.7 SHLVL=1 PWD=/Users/barrysmith/Src/petsc LD_LIBRARY_PATH=/Users/barrysmith/Src/PETSc/arch-clang/lib PETSC_DIR=/Users/barrysmith/Src/PETSc _=./configure PETSC_OPTIONS=-malloc_test TERM_SESSION_ID=AB9C124C-28A7-4D14-A42B-BDF1A224FAD2 SSH_AUTH_SOCK=/tmp/launch-vIUrYZ/Listeners DATAFILESPATH=/Users/barrysmith/Datafiles Apple_PubSub_Socket_Render=/tmp/launch-6h9F9z/Render TMPDIR=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/ OLDPWD=/Users/barrysmith CLICOLOR= __CF_USER_TEXT_ENCODING=0x1F7:0:0 Apple_Ubiquity_Message=/tmp/launch-peaBZ4/Apple_Ubiquity_Message PETSC_ARCH=arch-clang COMMAND_MODE=unix2003 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1510) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1510) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1475) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1475) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1494) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1494) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:399) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:399) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:409) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:409) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to ['-Wl,-multiply_defined,suppress', '-Wl,-multiply_defined -Wl,suppress', '-Wl,-commons,use_dylibs', '-Wl,-search_paths_first'] Initialized CXX_LINKER_FLAGS to ['-Wl,-multiply_defined,suppress', '-Wl,-multiply_defined -Wl,suppress', '-Wl,-commons,use_dylibs', '-Wl,-search_paths_first'] Initialized FC_LINKER_FLAGS to ['-Wl,-multiply_defined,suppress', '-Wl,-multiply_defined -Wl,suppress', '-Wl,-commons,use_dylibs', '-Wl,-search_paths_first'] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:525) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:525) Locate a functional C compiler Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc...found Defined make macro "CC" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc" Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:560) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:560) Locate a functional C preprocessor Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc...found Defined make macro "CPP" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E" Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 407 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 246 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 255 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 36 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; typedef __darwin_wchar_t wchar_t; typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 145 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) __attribute__((availability(macosx,introduced=10.6))); void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ); size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 78 "/usr/include/i386/types.h" 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 256 "/usr/include/stdlib.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) __attribute__((availability(macosx,introduced=10.7))); void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) __attribute__((availability(macosx,introduced=10.7))); int atexit_b(void (^)(void)) __attribute__((availability(macosx,introduced=10.6))); void *bsearch_b(const void *, const void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((availability(macosx,introduced=10.0,deprecated=10.5))); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int heapsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((availability(macosx,introduced=10.6))); void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c" Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:594) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:594) Locate a functional CUDA compiler Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /Users/barrysmith/Src/petsc/bin/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA sh: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu Executing: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu sh: Possible ERROR while running compiler: ret = 256 error message = {clang: error: unsupported option '-dumpspecs' clang: error: no input files } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /Users/barrysmith/Src/petsc/bin/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA sh: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu Executing: nvcc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cu sh: Possible ERROR while running compiler: ret = 256 error message = {clang: error: unsupported option '-dumpspecs' clang: error: no input files } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:632) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:632) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional Cxx compiler Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx...found Defined make macro "CXX" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx" Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:773) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:773) Locate a functional Cxx preprocessor Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx...found Defined make macro "CXXCPP" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -E" Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" # 1 "" 1 # 1 "" 3 # 167 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.2.1/cstdlib" 1 3 # 48 "/usr/include/c++/4.2.1/cstdlib" 3 # 48 "/usr/include/c++/4.2.1/cstdlib" 3 # 1 "/usr/include/c++/4.2.1/bits/c++config.h" 1 3 # 41 "/usr/include/c++/4.2.1/bits/c++config.h" 3 # 1 "/usr/include/c++/4.2.1/bits/os_defines.h" 1 3 # 61 "/usr/include/c++/4.2.1/bits/os_defines.h" 3 # 1 "/usr/include/unistd.h" 1 3 4 # 71 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 72 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 138 "/usr/include/sys/unistd.h" 3 4 struct accessx_descriptor { unsigned int ad_name_offset; int ad_flags; int ad_pad[2]; }; # 73 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 74 "/usr/include/unistd.h" 2 3 4 typedef __darwin_gid_t gid_t; typedef __darwin_intptr_t intptr_t; typedef __darwin_off_t off_t; typedef __darwin_pid_t pid_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_uid_t uid_t; typedef __darwin_useconds_t useconds_t; # 458 "/usr/include/unistd.h" 3 4 extern "C" { void _exit(int) __attribute__((noreturn)); int access(const char *, int); unsigned int alarm(unsigned int); int chdir(const char *); int chown(const char *, uid_t, gid_t); int close(int) __asm("_" "close" ); int dup(int); int dup2(int, int); int execl(const char *, const char *, ...); int execle(const char *, const char *, ...); int execlp(const char *, const char *, ...); int execv(const char *, char * const *); int execve(const char *, char * const *, char * const *); int execvp(const char *, char * const *); pid_t fork(void); long fpathconf(int, int); char *getcwd(char *, size_t); gid_t getegid(void); uid_t geteuid(void); gid_t getgid(void); int getgroups(int, gid_t []); char *getlogin(void); pid_t getpgrp(void); pid_t getpid(void); pid_t getppid(void); uid_t getuid(void); int isatty(int); int link(const char *, const char *); off_t lseek(int, off_t, int); long pathconf(const char *, int); int pause(void) __asm("_" "pause" ); int pipe(int [2]); ssize_t read(int, void *, size_t) __asm("_" "read" ); int rmdir(const char *); int setgid(gid_t); int setpgid(pid_t, pid_t); pid_t setsid(void); int setuid(uid_t); unsigned int sleep(unsigned int) __asm("_" "sleep" ); long sysconf(int); pid_t tcgetpgrp(int); int tcsetpgrp(int, pid_t); char *ttyname(int); int ttyname_r(int, char *, size_t) __asm("_" "ttyname_r" ); int unlink(const char *); ssize_t write(int, const void *, size_t) __asm("_" "write" ); } # 535 "/usr/include/unistd.h" 3 4 extern "C" { size_t confstr(int, char *, size_t) __asm("_" "confstr" ); int getopt(int, char * const [], const char *) __asm("_" "getopt" ); extern char *optarg; extern int optind, opterr, optopt; } # 560 "/usr/include/unistd.h" 3 4 extern "C" { void *brk(const void *); int chroot(const char *) ; char *crypt(const char *, const char *); char *ctermid(char *); void encrypt(char *, int) __asm("_" "encrypt" ); int fchdir(int); long gethostid(void); pid_t getpgid(pid_t); pid_t getsid(pid_t); int getdtablesize(void) ; int getpagesize(void) __attribute__((const)) ; char *getpass(const char *) ; char *getwd(char *) ; int lchown(const char *, uid_t, gid_t) __asm("_" "lchown" ); int lockf(int, int, off_t) __asm("_" "lockf" ); int nice(int) __asm("_" "nice" ); ssize_t pread(int, void *, size_t, off_t) __asm("_" "pread" ); ssize_t pwrite(int, const void *, size_t, off_t) __asm("_" "pwrite" ); void *sbrk(int); pid_t setpgrp(void) __asm("_" "setpgrp" ); int setregid(gid_t, gid_t) __asm("_" "setregid" ); int setreuid(uid_t, uid_t) __asm("_" "setreuid" ); void swab(const void * , void * , ssize_t); void sync(void); int truncate(const char *, off_t); useconds_t ualarm(useconds_t, useconds_t); int usleep(useconds_t) __asm("_" "usleep" ); pid_t vfork(void); int fsync(int) __asm("_" "fsync" ); int ftruncate(int, off_t); int getlogin_r(char *, size_t); } # 647 "/usr/include/unistd.h" 3 4 extern "C" { int fchown(int, uid_t, gid_t); int gethostname(char *, size_t); ssize_t readlink(const char * , char * , size_t); int setegid(gid_t); int seteuid(uid_t); int symlink(const char *, const char *); } # 1 "/usr/include/sys/select.h" 1 3 4 # 66 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/sys/select.h" 2 3 4 # 78 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 183 "/usr/include/sys/_structs.h" 3 4 extern "C" { typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; } static inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/select.h" 2 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; typedef __darwin_sigset_t sigset_t; # 134 "/usr/include/sys/select.h" 3 4 extern "C" { int pselect(int, fd_set * , fd_set * , fd_set * , const struct timespec * , const sigset_t * ) __asm("_" "pselect" "$1050") ; # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * , fd_set * , fd_set * , struct timeval * ) __asm("_" "select" "$1050") ; # 153 "/usr/include/sys/select.h" 2 3 4 } # 663 "/usr/include/unistd.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; typedef __darwin_uuid_t uuid_t; extern "C" { void _Exit(int) __attribute__((noreturn)); int accessx_np(const struct accessx_descriptor *, size_t, int *, uid_t); int acct(const char *); int add_profil(char *, size_t, unsigned long, unsigned int); void endusershell(void); int execvP(const char *, const char *, char * const *); char *fflagstostr(unsigned long); int getdomainname(char *, int); int getgrouplist(const char *, int, int *, int *); int gethostuuid(uuid_t, const struct timespec *) __attribute__((availability(macosx,introduced=10.5))); mode_t getmode(const void *, mode_t); int getpeereid(int, uid_t *, gid_t *); int getsgroups_np(int *, uuid_t); char *getusershell(void); int getwgroups_np(int *, uuid_t); int initgroups(const char *, int); int iruserok(unsigned long, int, const char *, const char *); int iruserok_sa(const void *, int, int, const char *, const char *); int issetugid(void); char *mkdtemp(char *); int mknod(const char *, mode_t, dev_t); int mkpath_np(const char *path, mode_t omode) __attribute__((availability(macosx,introduced=10.8))); int mkstemp(char *); int mkstemps(char *, int); char *mktemp(char *); int nfssvc(int, void *); int profil(char *, size_t, unsigned long, unsigned int); int pthread_setugid_np(uid_t, gid_t); int pthread_getugid_np( uid_t *, gid_t *); int rcmd(char **, int, const char *, const char *, const char *, int *); int rcmd_af(char **, int, const char *, const char *, const char *, int *, int); int reboot(int); int revoke(const char *); int rresvport(int *); int rresvport_af(int *, int); int ruserok(const char *, int, const char *, const char *); int setdomainname(const char *, int); int setgroups(int, const gid_t *); void sethostid(long); int sethostname(const char *, int); void setkey(const char *) __asm("_" "setkey" ); int setlogin(const char *); void *setmode(const char *) __asm("_" "setmode" ); int setrgid(gid_t); int setruid(uid_t); int setsgroups_np(int, const uuid_t); void setusershell(void); int setwgroups_np(int, const uuid_t); int strtofflags(char **, unsigned long *, unsigned long *); int swapon(const char *); int syscall(int, ...); int ttyslot(void); int undelete(const char *); int unwhiteout(const char *); void *valloc(size_t); extern char *suboptarg; int getsubopt(char **, char * const *, char **); int fgetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int fsetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int getattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "getattrlist" ); int setattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "setattrlist" ); int exchangedata(const char*,const char*,unsigned int); int getdirentriesattr(int,void*,void*,size_t,unsigned int*,unsigned int*,unsigned int*,unsigned int); # 763 "/usr/include/unistd.h" 3 4 struct fssearchblock; struct searchstate; int searchfs(const char *, struct fssearchblock *, unsigned long *, unsigned int, unsigned int, struct searchstate *); int fsctl(const char *,unsigned long,void*,unsigned int); int ffsctl(int,unsigned long,void*,unsigned int) __attribute__((availability(macosx,introduced=10.6))); int fsync_volume_np(int, int) __attribute__((availability(macosx,introduced=10.8))); int sync_volume_np(const char *, int) __attribute__((availability(macosx,introduced=10.8))); extern int optreset; } # 62 "/usr/include/c++/4.2.1/bits/os_defines.h" 2 3 extern "C" { # 92 "/usr/include/c++/4.2.1/bits/os_defines.h" 3 extern void __dtrace_probe$cxa_runtime$cxa_exception_rethrow$v1(void); extern int __dtrace_isenabled$cxa_runtime$cxa_exception_rethrow$v1(void); extern void __dtrace_probe$cxa_runtime$cxa_exception_throw$v1$766f6964202a(void *); extern int __dtrace_isenabled$cxa_runtime$cxa_exception_throw$v1(void); } # 42 "/usr/include/c++/4.2.1/bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.2.1/bits/cpu_defines.h" 1 3 # 45 "/usr/include/c++/4.2.1/bits/c++config.h" 2 3 # 153 "/usr/include/c++/4.2.1/bits/c++config.h" 3 namespace std { # 165 "/usr/include/c++/4.2.1/bits/c++config.h" 3 } # 50 "/usr/include/c++/4.2.1/cstdlib" 2 3 # 1 "/usr/include/c++/4.2.1/cstddef" 1 3 # 48 "/usr/include/c++/4.2.1/cstddef" 3 # 48 "/usr/include/c++/4.2.1/cstddef" 3 # 1 "/usr/bin/../lib/clang/5.0/include/stddef.h" 1 3 4 # 34 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 51 "/usr/include/c++/4.2.1/cstddef" 2 3 namespace std { using ::ptrdiff_t; using ::size_t; } # 51 "/usr/include/c++/4.2.1/cstdlib" 2 3 # 71 "/usr/include/c++/4.2.1/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 65 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 95 "/usr/include/sys/wait.h" 3 4 typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 175 "/usr/include/sys/signal.h" 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 extern "C" { void (*signal(int, void (*)(int)))(int); } # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 extern "C" { int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((availability(macosx,introduced=10.5))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((availability(macosx,introduced=10.5))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); } # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 254 "/usr/include/sys/wait.h" 3 4 extern "C" { pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); } # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 35 "/usr/include/alloca.h" 3 4 extern "C" { void *alloca(size_t); } # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; # 97 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 144 "/usr/include/stdlib.h" 3 4 extern "C" { void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:882) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:882) Locate a functional Fortran compiler Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90...found Defined make macro "FC" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90" Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:901) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:901) Make sure fortran comment "!" works Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:964) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:964) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc --help Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying C compiler flag -fPIC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx --help Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying Cxx compiler flag -fPIC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 --help Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -fPIC -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:997) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:997) ================================================================================ TEST checkArchiver from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1096) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1096) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: ar -V Executing: ar -V sh: sh: ar -V Executing: ar -V sh: Defined make macro "FAST_AR_FLAGS" to "Scq" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /opt/local/bin/ar...not found Checking for program /opt/local/sbin/ar...not found Checking for program /Users/barrysmith/Src/petsc/bin/ar...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/ar...not found Checking for program /Users/barrysmith/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/local/bin/ranlib...not found Checking for program /opt/local/sbin/ranlib...not found Checking for program /Users/barrysmith/Src/petsc/bin/ranlib...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/ranlib...not found Checking for program /Users/barrysmith/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conf1.o Executing: /usr/bin/ar cr /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conf1.o sh: sh: /usr/bin/ranlib -c /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a Executing: /usr/bin/ranlib -c /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconf1.a sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconf1 Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1211) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1211) Check that the linker can produce shared libraries sh: uname -s Executing: uname -s sh: Darwin Checking shared linker /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc...found Defined make macro "LD_SHARED" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -dynamiclib -single_module sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -undefined dynamic_lookup sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -multiply_defined suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:7:8: warning: if statement has empty body [-Wempty-body] if(ret);; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:7:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconftest Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -lconftest sh: Using shared linker /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib sh: uname -s Executing: uname -s sh: Darwin ================================================================================ TEST checkLinkerMac from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1269) TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1269) Tests some Apple Mac specific linker flags Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-multiply_defined,suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-multiply_defined -Wl,suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-commons,use_dylibs sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-search_paths_first Popping language C Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-multiply_defined,suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-commons,use_dylibs sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-search_paths_first Popping language Cxx Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-multiply_defined,suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-multiply_defined -Wl,suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-commons,use_dylibs sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-search_paths_first Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1289) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1289) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: uname -s Executing: uname -s sh: Darwin sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -V Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -V sh: Popping language C Pushing language Cxx sh: uname -s Executing: uname -s sh: Darwin sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -V Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -V sh: Popping language Cxx Pushing language FC sh: uname -s Executing: uname -s sh: Darwin sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -V Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -V sh: Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1324) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1324) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1373) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1373) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 37 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 38 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stdbool.h" 1 3 4 # 41 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/AvailabilityMacros.h" 1 3 4 # 42 "/usr/include/dlfcn.h" 2 3 4 typedef struct dl_info { const char *dli_fname; void *dli_fbase; const char *dli_sname; void *dli_saddr; } Dl_info; extern int dladdr(const void *, Dl_info *); extern int dlclose(void * __handle); extern char * dlerror(void); extern void * dlopen(const char * __path, int __mode); extern void * dlsym(void * __handle, const char * __symbol); extern _Bool dlopen_preflight(const char* __path) ; # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for function dlopen in library ['dl'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlsym in library ['dl'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlsym(); int main() { dlsym() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlclose in library ['dl'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlclose(); int main() { dlclose() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Darwin Checking dynamic linker /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -dynamiclib -single_module sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -undefined dynamic_lookup sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -multiply_defined suppress sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:11:3: warning: implicitly declaring library function 'printf' with type 'int (const char *, ...)' printf("Could not load symbol\n"); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:11:3: note: please include the header or explicitly provide a declaration for 'printf' 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -ldl sh: Using dynamic linker /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib ================================================================================ TEST output from config.setCompilers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/setCompilers.py:1419) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1419) Output module data as defines and substitutions Substituting "CC" with "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc --help Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c:5:18: warning: unused variable 'x' [-Wunused-variable] float * restrict x;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Defined "C_RESTRICT" to "restrict" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c:6:5: warning: unused variable 'i' [-Wunused-variable] int i = foo(1);; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } Defined "C_STATIC_INLINE" to "static inline" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_LAZY" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_NOW" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_LOCAL" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl sh: mpicc for MPICH version 3.0.4 Possible ERROR while running linker: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a output: mpicc for MPICH version 3.0.4 error message = {Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language FC Pushing language C Trying C compiler flag -MMD -MP sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -MMD -MP /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx --help Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc:5:17: error: expected ';' at end of declaration float * restrict x;; ^ ; 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc:5:23: warning: unused variable 'x' [-Wunused-variable] float * __restrict__ x;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Defined "CXX_RESTRICT" to " __restrict__" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Defined "HAVE_CXX_NAMESPACE" to "1" Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc:6:5: warning: unused variable 'i' [-Wunused-variable] int i = foo(1);; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } Defined "CXX_STATIC_INLINE" to "static inline" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: mpicxx for MPICH version 3.0.4 Possible ERROR while running linker: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/Users/barrysmith/Src/PETSc/arch-clang/lib -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -lclang_rt.osx -ldl -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread -lstdc++ -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a output: mpicxx for MPICH version 3.0.4 error message = {Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix "/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/Users/barrysmith/Src/PETSc/arch-clang/lib -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -lclang_rt.osx -ldl -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread -lstdc++ -lSystem /usr/bin/../lib/clang/5.0/lib/darwin/libclang_rt.osx.a } Pushing language CXX Popping language CXX in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language C Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main real*8 variable end Testing Fortran mangling type underscore with code void d1chk_(void){return;} sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_FORTRAN_UNDERSCORE" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status } Pushing language FC Popping language FC in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: program main call d1_chk() end Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -DTesting /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -DTesting /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -V Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -V sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: mpif90 for MPICH version 3.0.4 Possible ERROR while running linker: Driving: gfortran -mmacosx-version-min=10.8.5 -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/lto-wrapper Target: x86_64-apple-darwin12.3.0 Configured with: ../gcc-4.8-20130404/configure --enable-languages=fortran,c++ Thread model: posix gcc version 4.8.1 20130404 (prerelease) (GCC) Reading specs from /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/ LIBRARY_PATH=/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-shared-libgcc' '-mtune=core2' /usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lpmpich -lmpich -lopa -lmpl -lSystem -lclang_rt.osx -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v -idsym collect2 version 4.8.1 20130404 (prerelease) /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lpmpich -lmpich -lopa -lmpl -lSystem -lclang_rt.osx -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-224.1 configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 armv6m armv7m armv7em Library search paths: /Users/barrysmith/Src/PETSc/arch-clang/lib /usr/lib/clang/5.0/lib/darwin /usr/lib/clang/5.0/lib/darwin /Users/barrysmith/Src/PETSc/arch-clang/lib /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 /usr/local/lib /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ output: mpif90 for MPICH version 3.0.4 error message = {Driving: gfortran -mmacosx-version-min=10.8.5 -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/lto-wrapper Target: x86_64-apple-darwin12.3.0 Configured with: ../gcc-4.8-20130404/configure --enable-languages=fortran,c++ Thread model: posix gcc version 4.8.1 20130404 (prerelease) (GCC) Reading specs from /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/ LIBRARY_PATH=/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-g' '-o' '/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest' '-v' '-fPIC' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-L/usr/bin/../lib/clang/5.0/lib/darwin' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-I' '/Users/barrysmith/Src/PETSc/arch-clang/include' '-L/Users/barrysmith/Src/PETSc/arch-clang/lib' '-shared-libgcc' '-mtune=core2' /usr/local/libexec/gcc/x86_64-apple-darwin12.3.0/4.8.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lpmpich -lmpich -lopa -lmpl -lSystem -lclang_rt.osx -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v -idsym collect2 version 4.8.1 20130404 (prerelease) /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1/../../.. -flat_namespace -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -lpmpich -lmpich -lopa -lmpl -lSystem -lclang_rt.osx -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-224.1 configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 armv6m armv7m armv7em Library search paths: /Users/barrysmith/Src/PETSc/arch-clang/lib /usr/lib/clang/5.0/lib/darwin /usr/lib/clang/5.0/lib/darwin /Users/barrysmith/Src/PETSc/arch-clang/lib /usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 /usr/local/lib /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ } Pushing language FC Popping language FC in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: program main end Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language C Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest sh: Popping language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/cxxobj.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/cxxobj.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confc.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "USING_F90" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "USING_F2003" to "1" sh: uname -s Executing: uname -s sh: Darwin sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); abort(); } return; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/fooobj.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/fooobj.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest sh: arrays [0x7fff56f3c6c0 0x7fff56f3c6c0 0x7fff56f3c6c0] arrays [0x7fff56f3c670 0x7fff56f3c620 0x7fff56f3c670] pointers do not match! [0x7fff89b714f0 0x7fff56f3c6c0] [0x10] ERROR while running executable: Could not execute "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest": arrays [0x7fff56f3c6c0 0x7fff56f3c6c0 0x7fff56f3c6c0] arrays [0x7fff56f3c670 0x7fff56f3c620 0x7fff56f3c670] pointers do not match! [0x7fff89b714f0 0x7fff56f3c6c0] [0x10] Program received signal SIGABRT: Process abort signal. Backtrace for this error: #0 0x108FE60D7 #1 0x108FE676E #2 0x7FFF89ACB909 sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/configtest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/configtest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option ‘-module’ } Source: module configtest integer testint parameter (testint = 42) end module configtest sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module:/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -module:/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option ‘-module:/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir’ } Source: module configtest integer testint parameter (testint = 42) end module configtest sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fmod=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fmod=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option ‘-fmod=/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir’ } Source: module configtest integer testint parameter (testint = 42) end module configtest sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -J/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -J/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/confdir -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers/conftest.F sh: Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc --version Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc --version sh: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix getCompilerVersion: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -show Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -show sh: clang -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICC_SHOW" to "clang -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpmpich -lmpich -lopa -lmpl -lpthread" sh: clang --help Executing: clang --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying C compiler flag -Wall sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -show Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -show sh: clang -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICC_SHOW" to "clang -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpmpich -lmpich -lopa -lmpl -lpthread" sh: clang --help Executing: clang --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying C compiler flag -g3 sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Trying C compiler flag -fno-inline sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-inline Trying C compiler flag -O0 sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O0 Popping language C Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx --version Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx --version sh: Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix getCompilerVersion: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx Apple LLVM version 5.0 (clang-500.2.75) (based on LLVM 3.3svn) sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -show Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -show sh: clang++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICXX_SHOW" to "clang++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread" sh: clang++ --help Executing: clang++ --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying Cxx compiler flag -Wall sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -show Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -show sh: clang++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICXX_SHOW" to "clang++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread" sh: clang++ --help Executing: clang++ --help sh: OVERVIEW: clang LLVM compiler USAGE: clang [options] OPTIONS: -### Print the commands to run for this compilation -E Only run the preprocessor -F Add directory to framework include search path -H Show header includes and nesting depth -I Add directory to include search path -MG Add missing headers to dependency list -MP Create phony target for each dependency (other than main file) -MQ Specify target to quote for dependency -MT Specify target for dependency -ObjC++ Treat source input files as Objective-C++ inputs -ObjC Treat source input files as Objective-C inputs -P Disable linemarker output in -E mode -Qunused-arguments Don't emit warning for unused driver arguments -S Only run preprocess and compilation steps -Wa, Pass the comma separated arguments in to the assembler -Wl, Pass the comma separated arguments in to the linker -Wp, Pass the comma separated arguments in to the preprocessor -W Enable the specified warning -Xanalyzer Pass to the static analyzer -Xassembler Pass to the assembler -Xclang Pass to the clang compiler -Xlinker Pass to the linker -Xpreprocessor Pass to the preprocessor --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -cl-kernel-arg-info OpenCL only. This option allows the compiler to store information about the arguments of a kernel(s) -cxx-isystem Add directory to the C++ SYSTEM include search path -c Only run preprocess, compile, and assemble steps -dD Print macro definitions in -E mode in addition to normal output -dM Print macro definitions in -E mode instead of normal output -dependency-dot Filename to write DOT-formatted header dependencies to -dependency-file Filename (or -) to write dependency output to -emit-ast Emit Clang AST files for source inputs -emit-llvm Use the LLVM representation for assembler and object files -faltivec Enable AltiVec vector initializer syntax -fapple-kext Use Apple's kernel extensions ABI -fapple-pragma-pack Enable Apple gcc-compatible #pragma pack handling -fblocks Enable the 'blocks' language feature -fborland-extensions Accept non-standard constructs supported by the Borland compiler -fbounds-checking Enable run-time bounds checks -fcolor-diagnostics Use colors in diagnostics -fcomment-block-commands= Treat each comma separated argument in as a documentation comment block command -fcxx-exceptions Enable C++ exceptions -fdata-sections Place each data in its own section (ELF Only) -fdelayed-template-parsing Parse templated function definitions at the end of the translation unit -fdiagnostics-parseable-fixits Print fix-its in machine parseable form -fdiagnostics-print-source-range-info Print source range spans in numeric form -fdiagnostics-show-name Print diagnostic name -fdiagnostics-show-note-include-stack Display include stacks for diagnostic notes -fdiagnostics-show-option Print option name with mappable diagnostics -fdiagnostics-show-template-tree Print a template comparison tree for differing templates -fdollars-in-identifiers Allow '$' in identifiers -femit-all-decls Emit all declarations, even if unused -fexceptions Enable support for exception handling -ffast-math Enable the *frontend*'s 'fast-math' mode. This has no effect on optimizations, but provides a preprocessor macro __FAST_MATH__ the same as GCC's -ffast-math flag -ffp-contract= Form fused FP ops (e.g. FMAs): fast (everywhere) | on (according to FP_CONTRACT pragma, default) | off (never fuse) -ffreestanding Assert that the compilation takes place in a freestanding environment -ffunction-sections Place each function in its own section (ELF Only) -fgnu-keywords Allow GNU-extension keywords regardless of language standard -fgnu-runtime Generate output compatible with the standard GNU Objective-C runtime -fgnu89-inline Use the gnu89 inline semantics -finstrument-functions Generate calls to instrument function entry and exit -flimit-debug-info Limit debug information produced to reduce size of debug binary -fmath-errno Require math functions to indicate errors by setting errno -fmodules-cache-path= Specify the module cache path -fmodules-ignore-macro= Ignore the definition of the given macro when building and loading modules -fmodules-prune-after= Specify the interval (in seconds) after which a module file will be considered unused -fmodules-prune-interval= Specify the interval (in seconds) between attempts to prune the module cache -fmodules Enable the 'modules' language feature -fms-compatibility Enable Microsoft compatibility mode -fms-extensions Accept some non-standard constructs supported by the Microsoft compiler -fmsc-version= Version of the Microsoft C/C++ compiler to report in _MSC_VER (0 = don't define it (default)) -fno-access-control Disable C++ access control -fno-assume-sane-operator-new Don't assume that C++'s global operator new can't alias any pointer -fno-autolink Disable generation of linker directives for automatic library linking -fno-builtin Disable implicit builtin knowledge of functions -fno-common Compile common globals like normal definitions -fno-constant-cfstrings Disable creation of CodeFoundation-type constant strings -fno-diagnostics-fixit-info Do not include fixit information in diagnostics -fno-diagnostics-show-note-include-stack Display include stacks for diagnostic notes -fno-dollars-in-identifiers Disallow '$' in identifiers -fno-elide-constructors Disable C++ copy constructor elision -fno-elide-type Do not elide types when printing diagnostics -fno-lax-vector-conversions Disallow implicit conversions between vectors with a different number of elements or different element types -fno-limit-debug-info Do not limit debug information produced to reduce size of debug binary -fno-merge-all-constants Disallow merging of constants -fno-modules-autolink Disable generation of linker directives for automatic library linking -fno-objc-infer-related-result-type do not infer Objective-C related result type based on method family -fno-operator-names Do not treat C++ operator name keywords as synonyms for operators -fno-rtti Disable generation of rtti information -fno-sanitize-blacklist Don't use blacklist file for sanitizers -fno-sanitize-recover Disable sanitizer check recovery -fno-show-column Do not include column number on diagnostics -fno-show-source-location Do not include source location information with diagnostics -fno-spell-checking Disable spell-checking -fno-threadsafe-statics Do not emit code to make initialization of local statics thread safe -fno-use-cxa-atexit Don't use __cxa_atexit for calling destructors -fno-use-init-array Don't use .init_array instead of .ctors -fobjc-arc-exceptions Use EH-safe code when synthesizing retains and releases in -fobjc-arc -fobjc-arc Synthesize retain and release calls for Objective-C pointers -fobjc-exceptions Enable Objective-C exceptions -fobjc-gc-only Use GC exclusively for Objective-C related memory management -fobjc-gc Enable Objective-C garbage collection -fobjc-runtime= Specify the target Objective-C runtime kind and version -fpack-struct= Specify the default maximum struct packing alignment -fpascal-strings Recognize and construct Pascal-style string literals -fsanitize-address-zero-base-shadow Make AddressSanitizer map shadow memoryat zero offset -fsanitize-blacklist= Path to blacklist file for sanitizers -fsanitize-memory-track-origins Enable origins tracking in MemorySanitizer -fsanitize= Enable runtime instrumentation for bug detection: undefined (miscellaneous undefined behavior) -fshort-enums Allocate to an enum type only as many bytes as it needs for the declared range of possible values -fshort-wchar Force wchar_t to be a short unsigned int -fshow-overloads= Which overload candidates to show when overload resolution fails: best|all; defaults to all -fstrict-enums Enable optimizations based on the strict definition of an enum's value range -ftrap-function= Issue call to specified function rather than a trap instruction -ftrapv-handler= Specify the function to be called on overflow -ftrapv Trap on integer overflow -funroll-loops Turn on loop unroller -fuse-init-array Use .init_array instead of .ctors -fvectorize Enable the loop vectorization passes -fvisibility-inlines-hidden Give inline C++ member functions default visibility by default -fvisibility-ms-compat Give global types 'default' visibility and global functions and variables 'hidden' visibility by default -fvisibility= Set the default symbol visibility for all global declarations -fwrapv Treat signed integer overflow as two's complement -fwritable-strings Store string literals as writable data -gcc-toolchain Use the gcc toolchain at the given directory -gline-tables-only Emit debug line number tables only -g Generate source level debug information -help Display available options -idirafter Add directory to AFTER include search path -iframework Add directory to SYSTEM framework search path -imacros Include macros from file before parsing -include-pch Include precompiled header file -include Include file before parsing -index-header-map Make the next included directory (-I or -F) an indexer header map -iprefix Set the -iwithprefix/-iwithprefixbefore prefix -iquote Add directory to QUOTE include search path -isysroot-implicit Search both the system root and actual root include entries -isysroot Set the system root directory (usually /) -isystem Add directory to SYSTEM include search path -iwithprefixbefore Set directory to include search path with prefix -iwithprefix Set directory to SYSTEM include search path with prefix -iwithsysroot Add directory to SYSTEM include search path, absolute paths are relative to -isysroot --migrate-xct Apply modifications and produces temporary files to migrate to Xcode Testing framework --migrate Run the migrator -mllvm Additional arguments to forward to LLVM's option processing -mms-bitfields Set the default structure layout to be compatible with the Microsoft compiler standard -mno-global-merge Disable merging of globals -mno-implicit-float Don't generate implicit floating point instructions -momit-leaf-frame-pointer Omit frame pointer setup for leaf functions -mqdsp6-compat Enable hexagon-qdsp6 backward compatibility -mrelax-all (integrated-as) Relax all machine instructions -mrtd Make StdCall calling convention the default -msoft-float Use software floating point -mstack-alignment= Set the stack alignment -mstackrealign Force realign the stack at entry to every function -mstrict-align Force all memory accesses to be aligned (ARM only) -nobuiltininc Disable builtin #include directories -nostdinc++ Disable standard #include directories for the C++ standard library -objcmt-migrate-literals Enable migration to modern ObjC literals -objcmt-migrate-subscripting Enable migration to modern ObjC subscripting -o Write output to -pg Enable mcount instrumentation -pipe Use pipes between commands, when possible -print-file-name= Print the full library path of -print-ivar-layout Enable Objective-C Ivar layout bitmap print trace -print-libgcc-file-name Print the library path for "libgcc.a" -print-prog-name= Print the full program path of -print-search-dirs Print the paths used for finding libraries and programs -pthread Support POSIX threads in generated code -rewrite-legacy-objc Rewrite Legacy Objective-C source to C++ -rewrite-objc Rewrite Objective-C source to C++ -save-temps Save intermediate compilation results -serialize-diagnostics Serialize compiler diagnostics to a file -std= Language standard to compile for -stdlib= C++ standard library to use -target Generate code for the given target -time Time individual commands -traditional-cpp Enable some traditional CPP emulation -trigraphs Process trigraph sequences -undef undef all system defines -verify Verify output using a verifier -v Show commands to run and use verbose output -working-directory Resolve file paths relative to the specified directory -w Suppress all warnings -x Treat subsequent input files as having type Trying Cxx compiler flag -g sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 --version Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 --version sh: GNU Fortran (GCC) 4.8.1 20130404 (prerelease) Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 GNU Fortran (GCC) 4.8.1 20130404 (prerelease) sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -show Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -show sh: gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread" sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.8.1 20130404 (prerelease) Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.8.1 20130404 (prerelease) Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Trying FC compiler flag -Wall sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Trying FC compiler flag -Wno-unused-dummy-argument sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -show Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -show sh: gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread" sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -g sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -g Popping language FC Checking for library in Download MPI: [] Contents: ['bin', 'conf', 'etc', 'include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function MPI_Init in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); int main() { MPI_Init() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Checking for function MPI_Comm_create in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_create(); int main() { MPI_Comm_create() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Checking for headers Download MPI: ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Checking include with compiler flags var CPPFLAGS ['/Users/barrysmith/Src/PETSc/arch-clang/include'] sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" 1 # 27 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" # 1 "/usr/bin/../lib/clang/5.0/include/stddef.h" 1 3 4 # 34 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; typedef long unsigned int size_t; # 62 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef int wchar_t; # 28 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" 2 # 51 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" # 1 "/usr/bin/../lib/clang/5.0/include/stdint.h" 1 3 4 # 33 "/usr/bin/../lib/clang/5.0/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 34 "/usr/bin/../lib/clang/5.0/include/stdint.h" 2 3 4 # 52 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" 2 # 96 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef int MPI_Datatype; # 116 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" static const MPI_Datatype mpich_mpi_char __attribute__((type_tag_for_datatype(MPI,char))) = ((MPI_Datatype)0x4c000101); static const MPI_Datatype mpich_mpi_signed_char __attribute__((type_tag_for_datatype(MPI,signed char))) = ((MPI_Datatype)0x4c000118); static const MPI_Datatype mpich_mpi_unsigned_char __attribute__((type_tag_for_datatype(MPI,unsigned char))) = ((MPI_Datatype)0x4c000102); static const MPI_Datatype mpich_mpi_wchar __attribute__((type_tag_for_datatype(MPI,wchar_t))) = ((MPI_Datatype)0x4c00040e); static const MPI_Datatype mpich_mpi_short __attribute__((type_tag_for_datatype(MPI,short))) = ((MPI_Datatype)0x4c000203); static const MPI_Datatype mpich_mpi_unsigned_short __attribute__((type_tag_for_datatype(MPI,unsigned short))) = ((MPI_Datatype)0x4c000204); static const MPI_Datatype mpich_mpi_int __attribute__((type_tag_for_datatype(MPI,int))) = ((MPI_Datatype)0x4c000405); static const MPI_Datatype mpich_mpi_unsigned __attribute__((type_tag_for_datatype(MPI,unsigned))) = ((MPI_Datatype)0x4c000406); static const MPI_Datatype mpich_mpi_long __attribute__((type_tag_for_datatype(MPI,long))) = ((MPI_Datatype)0x4c000807); static const MPI_Datatype mpich_mpi_unsigned_long __attribute__((type_tag_for_datatype(MPI,unsigned long))) = ((MPI_Datatype)0x4c000808); static const MPI_Datatype mpich_mpi_float __attribute__((type_tag_for_datatype(MPI,float))) = ((MPI_Datatype)0x4c00040a); static const MPI_Datatype mpich_mpi_double __attribute__((type_tag_for_datatype(MPI,double))) = ((MPI_Datatype)0x4c00080b); static const MPI_Datatype mpich_mpi_long_double __attribute__((type_tag_for_datatype(MPI,long double))) = ((MPI_Datatype)0x4c00100c); static const MPI_Datatype mpich_mpi_long_long_int __attribute__((type_tag_for_datatype(MPI,long long int))) = ((MPI_Datatype)0x4c000809); static const MPI_Datatype mpich_mpi_unsigned_long_long __attribute__((type_tag_for_datatype(MPI,unsigned long long))) = ((MPI_Datatype)0x4c000819); # 156 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" struct mpich_struct_mpi_float_int { float f; int i; }; struct mpich_struct_mpi_double_int { double d; int i; }; struct mpich_struct_mpi_long_int { long l; int i; }; struct mpich_struct_mpi_short_int { short s; int i; }; struct mpich_struct_mpi_2int { int i1; int i2; }; struct mpich_struct_mpi_long_double_int { long double ld; int i; }; static const MPI_Datatype mpich_mpi_float_int __attribute__((type_tag_for_datatype(MPI,struct mpich_struct_mpi_float_int,layout_compatible))) = ((MPI_Datatype)0x8c000000); static const MPI_Datatype mpich_mpi_double_int __attribute__((type_tag_for_datatype(MPI,struct mpich_struct_mpi_double_int,layout_compatible))) = ((MPI_Datatype)0x8c000001); static const MPI_Datatype mpich_mpi_long_int __attribute__((type_tag_for_datatype(MPI,struct mpich_struct_mpi_long_int,layout_compatible))) = ((MPI_Datatype)0x8c000002); static const MPI_Datatype mpich_mpi_short_int __attribute__((type_tag_for_datatype(MPI,struct mpich_struct_mpi_short_int,layout_compatible))) = ((MPI_Datatype)0x8c000003); static const MPI_Datatype mpich_mpi_2int __attribute__((type_tag_for_datatype(MPI,struct mpich_struct_mpi_2int,layout_compatible))) = ((MPI_Datatype)0x4c000816); static const MPI_Datatype mpich_mpi_long_double_int __attribute__((type_tag_for_datatype(MPI,struct mpich_struct_mpi_long_double_int,layout_compatible))) = ((MPI_Datatype)0x8c000004); # 222 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" static const MPI_Datatype mpich_mpi_int8_t __attribute__((type_tag_for_datatype(MPI,int8_t))) = ((MPI_Datatype)0x4c000137); static const MPI_Datatype mpich_mpi_int16_t __attribute__((type_tag_for_datatype(MPI,int16_t))) = ((MPI_Datatype)0x4c000238); static const MPI_Datatype mpich_mpi_int32_t __attribute__((type_tag_for_datatype(MPI,int32_t))) = ((MPI_Datatype)0x4c000439); static const MPI_Datatype mpich_mpi_int64_t __attribute__((type_tag_for_datatype(MPI,int64_t))) = ((MPI_Datatype)0x4c00083a); static const MPI_Datatype mpich_mpi_uint8_t __attribute__((type_tag_for_datatype(MPI,uint8_t))) = ((MPI_Datatype)0x4c00013b); static const MPI_Datatype mpich_mpi_uint16_t __attribute__((type_tag_for_datatype(MPI,uint16_t))) = ((MPI_Datatype)0x4c00023c); static const MPI_Datatype mpich_mpi_uint32_t __attribute__((type_tag_for_datatype(MPI,uint32_t))) = ((MPI_Datatype)0x4c00043d); static const MPI_Datatype mpich_mpi_uint64_t __attribute__((type_tag_for_datatype(MPI,uint64_t))) = ((MPI_Datatype)0x4c00083e); # 240 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" static const MPI_Datatype mpich_mpi_c_bool __attribute__((type_tag_for_datatype(MPI,_Bool))) = ((MPI_Datatype)0x4c00013f); static const MPI_Datatype mpich_mpi_c_float_complex __attribute__((type_tag_for_datatype(MPI,float _Complex))) = ((MPI_Datatype)0x4c000840); static const MPI_Datatype mpich_mpi_c_double_complex __attribute__((type_tag_for_datatype(MPI,double _Complex))) = ((MPI_Datatype)0x4c001041); static const MPI_Datatype mpich_mpi_c_long_double_complex __attribute__((type_tag_for_datatype(MPI,long double _Complex))) = ((MPI_Datatype)0x4c002042); # 265 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 333 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" static const MPI_Datatype mpich_mpi_datatype_null __attribute__((type_tag_for_datatype(MPI,void,must_be_null))) = ((MPI_Datatype)0x0c000000); # 348 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; # 380 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; # 408 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef int MPI_Errhandler; # 429 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); # 483 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_HINDEXED_BLOCK = 11, MPI_COMBINER_STRUCT_INTEGER = 12, MPI_COMBINER_STRUCT = 13, MPI_COMBINER_SUBARRAY = 14, MPI_COMBINER_DARRAY = 15, MPI_COMBINER_F90_REAL = 16, MPI_COMBINER_F90_COMPLEX = 17, MPI_COMBINER_F90_INTEGER = 18, MPI_COMBINER_RESIZED = 19 }; typedef int MPI_Info; # 533 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; static const MPI_Datatype mpich_mpi_aint __attribute__((type_tag_for_datatype(MPI,MPI_Aint))) = ((MPI_Datatype)0x4c000843); # 552 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef long long MPI_Offset; static const MPI_Datatype mpich_mpi_offset __attribute__((type_tag_for_datatype(MPI,MPI_Offset))) = ((MPI_Datatype)0x4c000844); typedef struct MPI_Status { int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; MPI_Count count; int cancelled; int abi_slush_fund[2]; } MPI_Status; struct MPIR_T_enum; typedef struct MPIR_T_enum * MPI_T_enum; struct MPIR_T_cvar_handle; typedef struct MPIR_T_cvar_handle * MPI_T_cvar_handle; struct MPIR_T_pvar_handle; typedef struct MPIR_T_pvar_handle * MPI_T_pvar_handle; struct MPIR_T_pvar_session; typedef struct MPIR_T_pvar_session * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle * const MPI_T_PVAR_ALL_HANDLES; # 589 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL }; enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO }; enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_READONLY = 60439, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ }; enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPI_T_PVAR_CLASS_STATE = 240, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC }; # 707 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; # 726 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); # 822 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); # 842 "/Users/barrysmith/Src/PETSc/arch-clang/include/mpi.h" int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Buffer_attach(void *buffer, int size); int MPI_Buffer_detach(void *buffer_addr, int *size); int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Wait(MPI_Request *request, MPI_Status *status); int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int MPI_Request_free(MPI_Request *request); int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int MPI_Cancel(MPI_Request *request); int MPI_Test_cancelled(const MPI_Status *status, int *flag); int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Start(MPI_Request *request); int MPI_Startall(int count, MPI_Request array_of_requests[]); int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,6,8))); int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int MPI_Address(const void *location, MPI_Aint *address); int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int MPI_Type_size(MPI_Datatype datatype, int *size); int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_commit(MPI_Datatype *datatype); int MPI_Type_free(MPI_Datatype *datatype); int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int MPI_Barrier(MPI_Comm comm); int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,7))); int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,8))); int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int MPI_Op_free(MPI_Op *op); int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Group_size(MPI_Group group, int *size); int MPI_Group_rank(MPI_Group group, int *rank); int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_free(MPI_Group *group); int MPI_Comm_size(MPI_Comm comm, int *size); int MPI_Comm_rank(MPI_Comm comm, int *rank); int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int MPI_Comm_free(MPI_Comm *comm); int MPI_Comm_test_inter(MPI_Comm comm, int *flag); int MPI_Comm_remote_size(MPI_Comm comm, int *size); int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int MPI_Keyval_free(int *keyval); int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int MPI_Attr_delete(MPI_Comm comm, int keyval); int MPI_Topo_test(MPI_Comm comm, int *status); int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int MPI_Dims_create(int nnodes, int ndims, int dims[]); int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int MPI_Cartdim_get(MPI_Comm comm, int *ndims); int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int MPI_Get_processor_name(char *name, int *resultlen); int MPI_Get_version(int *version, int *subversion); int MPI_Get_library_version(char *version, int *resultlen); int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Errhandler_free(MPI_Errhandler *errhandler); int MPI_Error_string(int errorcode, char *string, int *resultlen); int MPI_Error_class(int errorcode, int *errorclass); double MPI_Wtime(void); double MPI_Wtick(void); int MPI_Init(int *argc, char ***argv); int MPI_Finalize(void); int MPI_Initialized(int *flag); int MPI_Abort(MPI_Comm comm, int errorcode); int MPI_Pcontrol(const int level, ...); int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name); int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_disconnect(MPI_Comm *comm); int MPI_Comm_get_parent(MPI_Comm *parent); int MPI_Comm_join(int fd, MPI_Comm *intercomm); int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int MPI_Open_port(MPI_Info info, char *port_name); int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Win_complete(MPI_Win win); int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_fence(int assert, MPI_Win win); int MPI_Win_free(MPI_Win *win); int MPI_Win_get_group(MPI_Win win, MPI_Group *group); int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); int MPI_Win_test(MPI_Win win, int *flag); int MPI_Win_unlock(int rank, MPI_Win win); int MPI_Win_wait(MPI_Win win); int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPI_Win_detach(MPI_Win win, const void *base); int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int MPI_Win_set_info(MPI_Win win, MPI_Info info); int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))) __attribute__((pointer_with_type_tag(MPI,3,4))); int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Win_lock_all(int assert, MPI_Win win); int MPI_Win_unlock_all(MPI_Win win); int MPI_Win_flush(int rank, MPI_Win win); int MPI_Win_flush_all(MPI_Win win); int MPI_Win_flush_local(int rank, MPI_Win win); int MPI_Win_flush_local_all(MPI_Win win); int MPI_Win_sync(MPI_Win win); int MPI_Add_error_class(int *errorclass); int MPI_Add_error_code(int errorclass, int *errorcode); int MPI_Add_error_string(int errorcode, const char *string); int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int MPI_Comm_free_keyval(int *comm_keyval); int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int MPI_File_call_errhandler(MPI_File fh, int errorcode); int MPI_Grequest_complete(MPI_Request request); int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); int MPI_Is_thread_main(int *flag); int MPI_Query_thread(int *provided); int MPI_Status_set_cancelled(MPI_Status *status, int flag); int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_free_keyval(int *type_keyval); int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int MPI_Win_call_errhandler(MPI_Win win, int errorcode); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int MPI_Win_delete_attr(MPI_Win win, int win_keyval); int MPI_Win_free_keyval(int *win_keyval); int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int MPI_Win_set_name(MPI_Win win, const char *win_name); int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int MPI_Finalized(int *flag); int MPI_Free_mem(void *base); int MPI_Get_address(const void *location, MPI_Aint *address); int MPI_Info_create(MPI_Info *info); int MPI_Info_delete(MPI_Info info, const char *key); int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int MPI_Info_set(MPI_Info info, const char *key, const char *value); int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) __attribute__((pointer_with_type_tag(MPI,5,7))); int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype); int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype); int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype); int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,7))); int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,8))); int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,8))); int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,8))); int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int MPIX_Comm_group_failed(MPI_Comm comm, MPI_Group *failed_group); int MPIX_Comm_remote_group_failed(MPI_Comm comm, MPI_Group *failed_group); int MPIX_Comm_reenable_anysource(MPI_Comm comm, MPI_Group *failed_group); int MPI_T_init_thread(int required, int *provided); int MPI_T_finalize(void); int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int MPI_T_cvar_get_num(int *num_cvar); int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int MPI_T_cvar_write(MPI_T_cvar_handle handle, void *buf); int MPI_T_pvar_get_num(int *num_pvar); int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int MPI_T_pvar_session_create(MPI_T_pvar_session *session); int MPI_T_pvar_session_free(MPI_T_pvar_session *session); int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_category_get_num(int *num_cat); int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); int MPI_T_category_get_categories(int cat_index, int len, int indices[]); int MPI_T_category_changed(int *stamp); int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,6,8))); int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,4,6))); int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))); int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,7))); int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,7))); int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,3))) __attribute__((pointer_with_type_tag(MPI,4,6))); int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,5,8))); int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) __attribute__((pointer_with_type_tag(MPI,1,4))) __attribute__((pointer_with_type_tag(MPI,2,4))); int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); Found header files ['mpi.h'] in ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:10: warning: unused variable 'a' [-Wunused-variable] MPI_Fint a; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:182) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:182) Check for functions added to the interface in MPI-2 sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MPI_FINALIZED" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MPI_IN_PLACE" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: ================================================================================ TEST configureTypes from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest sh: Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest sh: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest Executing: /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest sh: Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:320) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:320) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:632) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:632) Returns true if SGI MPI is used Checking for function MPI_SGI_barrier in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:642) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:642) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for function MPI_Finalize in library [] [] Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { int ierr; ierr = MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:660) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:660) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F sh: Successful compile: Source: program main include 'mpif.h' end Checking for fortran mpi_init() Checking for function in library [] [] Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F sh: Successful compile: Source: program main include 'mpif.h' integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language FC Checking for mpi.mod Checking for function in library [] [] Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.F sh: Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:685) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:685) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:54: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:12: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = NULL /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:28: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = NULL 3 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:53: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:53: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:23: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:12: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = NULL /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:27: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = NULL 3 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:61: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:23: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:12: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = NULL /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:16: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:9:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:8:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = 0 4 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:8:52: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:8:52: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:8:41: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^~~~ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = 0 2 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:8:25: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:8:25: note: put the semicolon on a separate line to silence this warning /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:7:10: warning: unused variable 'info' [-Wunused-variable] MPI_Info info; ^ 2 warnings generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:722) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:722) Find MPI include paths from "mpicc -show" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -show Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -show sh: clang -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpmpich -lmpich -lopa -lmpl -lpthread compilers: Checking arg clang compilers: Checking arg -fPIC compilers: Checking arg -Wall compilers: Checking arg -Wwrite-strings compilers: Checking arg -Wno-strict-aliasing compilers: Checking arg -Wno-unknown-pragmas compilers: Checking arg -g3 compilers: Checking arg -fno-inline compilers: Checking arg -O0 compilers: Checking arg -Wl,-flat_namespace compilers: Checking arg -I/Users/barrysmith/Src/PETSc/arch-clang/include compilers: Found include directory: /Users/barrysmith/Src/PETSc/arch-clang/include compilers: Checking arg -L/Users/barrysmith/Src/PETSc/arch-clang/lib compilers: Checking arg -lpmpich compilers: Checking arg -lmpich compilers: Checking arg -lopa compilers: Checking arg -lmpl compilers: Checking arg -lpthread Checking for function MPI_Alltoallw in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); int main() { MPI_Alltoallw() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Checking for function MPI_Type_create_indexed_block in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); int main() { MPI_Type_create_indexed_block() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for function MPI_Win_create in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); int main() { MPI_Win_create() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for function MPI_Comm_spawn in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); int main() { MPI_Comm_spawn() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Checking for function MPI_Type_get_envelope in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); int main() { MPI_Type_get_envelope() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Checking for function MPI_Type_get_extent in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_extent(); int main() { MPI_Type_get_extent() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Checking for function MPI_Type_dup in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_dup(); int main() { MPI_Type_dup() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_TYPE_DUP" to "1" Checking for function MPI_Init_thread in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init_thread(); int main() { MPI_Init_thread() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_INIT_THREAD" to "1" Checking for function MPIX_Iallreduce in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); int main() { MPIX_Iallreduce() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_MPIX_Iallreduce", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_MPIX_Iallreduce", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); int main() { MPIX_Iallreduce() ; return 0; } Popping language C Checking for function MPI_Iallreduce in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Iallreduce(); int main() { MPI_Iallreduce() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_IALLREDUCE" to "1" Checking for function MPI_Ibarrier in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Ibarrier(); int main() { MPI_Ibarrier() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_IBARRIER" to "1" Checking for function MPI_Finalized in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Finalized(); int main() { MPI_Finalized() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_FINALIZED" to "1" Checking for function MPI_Exscan in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Exscan(); int main() { MPI_Exscan() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPI_EXSCAN" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Checking for function MPIDI_CH3I_sock_set in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); int main() { MPIDI_CH3I_sock_set() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPICH_CH3_SOCK" to "1" Checking for function MPIDI_CH3I_sock_fixed_nbc_progress in library [] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); int main() { MPIDI_CH3I_sock_fixed_nbc_progress() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:132) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:132) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/MPI.py:145) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:145) Checking for mpiexec Pushing language C Popping language C Checking for program /Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec...found Defined make macro "MPIEXEC" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/lib1.dylib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/lib2.dylib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -ldl sh: Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest sh: =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 1 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== ERROR while running executable: Could not execute "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest": =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 1 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== Could not find initialization check function Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.valgrind(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.valgrind(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Package specific search directory VALGRIND: ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Checking include with compiler flags var CPPFLAGS ['/Users/barrysmith/Src/PETSc/arch-clang/include'] sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/local/include/valgrind/valgrind.h" 1 3 # 95 "/usr/local/include/valgrind/valgrind.h" 3 # 1 "/usr/bin/../lib/clang/5.0/include/stdarg.h" 1 3 4 # 30 "/usr/bin/../lib/clang/5.0/include/stdarg.h" 3 4 typedef __builtin_va_list va_list; # 48 "/usr/bin/../lib/clang/5.0/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 96 "/usr/local/include/valgrind/valgrind.h" 2 3 # 357 "/usr/local/include/valgrind/valgrind.h" 3 typedef struct { unsigned long long int nraddr; } OrigFn; # 4384 "/usr/local/include/valgrind/valgrind.h" 3 typedef enum { VG_USERREQ__RUNNING_ON_VALGRIND = 0x1001, VG_USERREQ__DISCARD_TRANSLATIONS = 0x1002, VG_USERREQ__CLIENT_CALL0 = 0x1101, VG_USERREQ__CLIENT_CALL1 = 0x1102, VG_USERREQ__CLIENT_CALL2 = 0x1103, VG_USERREQ__CLIENT_CALL3 = 0x1104, VG_USERREQ__COUNT_ERRORS = 0x1201, VG_USERREQ__GDB_MONITOR_COMMAND = 0x1202, VG_USERREQ__MALLOCLIKE_BLOCK = 0x1301, VG_USERREQ__RESIZEINPLACE_BLOCK = 0x130b, VG_USERREQ__FREELIKE_BLOCK = 0x1302, VG_USERREQ__CREATE_MEMPOOL = 0x1303, VG_USERREQ__DESTROY_MEMPOOL = 0x1304, VG_USERREQ__MEMPOOL_ALLOC = 0x1305, VG_USERREQ__MEMPOOL_FREE = 0x1306, VG_USERREQ__MEMPOOL_TRIM = 0x1307, VG_USERREQ__MOVE_MEMPOOL = 0x1308, VG_USERREQ__MEMPOOL_CHANGE = 0x1309, VG_USERREQ__MEMPOOL_EXISTS = 0x130a, # 4429 "/usr/local/include/valgrind/valgrind.h" 3 VG_USERREQ__PRINTF = 0x1401, VG_USERREQ__PRINTF_BACKTRACE = 0x1402, VG_USERREQ__PRINTF_VALIST_BY_REF = 0x1403, VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF = 0x1404, VG_USERREQ__STACK_REGISTER = 0x1501, VG_USERREQ__STACK_DEREGISTER = 0x1502, VG_USERREQ__STACK_CHANGE = 0x1503, VG_USERREQ__LOAD_PDB_DEBUGINFO = 0x1601, VG_USERREQ__MAP_IP_TO_SRCLOC = 0x1701, VG_USERREQ__CHANGE_ERR_DISABLEMENT = 0x1801 } Vg_ClientRequest; # 4486 "/usr/local/include/valgrind/valgrind.h" 3 static int VALGRIND_PRINTF(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs, format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }); __builtin_va_end(vargs); return (int)_qzz_res; } static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) __attribute__((format(__printf__, 1, 2), __unused__)); static int VALGRIND_PRINTF_BACKTRACE(const char *format, ...) { unsigned long _qzz_res; va_list vargs; __builtin_va_start(vargs, format); _qzz_res = __extension__ ({ volatile unsigned long long int _zzq_args[6]; volatile unsigned long long int _zzq_result; _zzq_args[0] = (unsigned long long int)(VG_USERREQ__PRINTF_BACKTRACE_VALIST_BY_REF); _zzq_args[1] = (unsigned long long int)((unsigned long)format); _zzq_args[2] = (unsigned long long int)((unsigned long)&vargs); _zzq_args[3] = (unsigned long long int)(0); _zzq_args[4] = (unsigned long long int)(0); _zzq_args[5] = (unsigned long long int)(0); __asm__ volatile("rolq $3, %%rdi ; rolq $13, %%rdi\n\t" "rolq $61, %%rdi ; rolq $51, %%rdi\n\t" "xchgq %%rbx,%%rbx" : "=d" (_zzq_result) : "a" (&_zzq_args[0]), "0" (0) : "cc", "memory" ); _zzq_result; }); __builtin_va_end(vargs); return (int)_qzz_res; } # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 Found header files ['valgrind/valgrind.h'] in ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Popping language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.threadcomm(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.threadcomm(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.tetgen(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.tetgen(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing or if it is needed Checking for program /opt/local/bin/bfort...not found Checking for program /opt/local/sbin/bfort...not found Checking for program /Users/barrysmith/Src/petsc/bin/bfort...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/bfort...not found Checking for program /Users/barrysmith/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /opt/X11/bin/bfort...not found Checking for program /Users/barrysmith/Src/petsc-dev/bin/bfort...not found Checking for program /Users/barrysmith/bin/bfort...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/bfort...not found Checking for program /usr/X11R6/bin/bfort...not found Checking for program /opt/local/bin/bfort...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/X11R6/bin/bfort...not found Checking for program /opt/local/bin/bfort...not found Checking for program /Users/barrysmith/Src/pyjs/bin/bfort...not found Checking for program /Users/barrysmith/bfort...not found Checking for program /Users/barrysmith/Src/PETSc/bin/win32fe/bfort...not found Checking for program /opt/local/bin/doctext...not found Checking for program /opt/local/sbin/doctext...not found Checking for program /Users/barrysmith/Src/petsc/bin/doctext...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/doctext...not found Checking for program /Users/barrysmith/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /opt/X11/bin/doctext...not found Checking for program /Users/barrysmith/Src/petsc-dev/bin/doctext...not found Checking for program /Users/barrysmith/bin/doctext...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/doctext...not found Checking for program /usr/X11R6/bin/doctext...not found Checking for program /opt/local/bin/doctext...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/X11R6/bin/doctext...not found Checking for program /opt/local/bin/doctext...not found Checking for program /Users/barrysmith/Src/pyjs/bin/doctext...not found Checking for program /Users/barrysmith/doctext...not found Checking for program /Users/barrysmith/Src/PETSc/bin/win32fe/doctext...not found Checking for program /opt/local/bin/mapnames...not found Checking for program /opt/local/sbin/mapnames...not found Checking for program /Users/barrysmith/Src/petsc/bin/mapnames...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/mapnames...not found Checking for program /Users/barrysmith/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /usr/local/bin/mapnames...found Defined make macro "MAPNAMES" to "/usr/local/bin/mapnames" Checking for program /opt/local/bin/bib2html...not found Checking for program /opt/local/sbin/bib2html...not found Checking for program /Users/barrysmith/Src/petsc/bin/bib2html...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/bib2html...not found Checking for program /Users/barrysmith/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /usr/local/bin/bib2html...found Defined make macro "BIB2HTML" to "/usr/local/bin/bib2html" Checking for program /opt/local/bin/pdflatex...not found Checking for program /opt/local/sbin/pdflatex...not found Checking for program /Users/barrysmith/Src/petsc/bin/pdflatex...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/pdflatex...not found Checking for program /Users/barrysmith/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /opt/X11/bin/pdflatex...not found Checking for program /Users/barrysmith/Src/petsc-dev/bin/pdflatex...not found Checking for program /Users/barrysmith/bin/pdflatex...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/local/texlive/2012/bin/x86_64-darwin/pdflatex" Bfort not found. Installing sowing for FortranStubs Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.sowing(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing-1.1.16e Have to rebuild sowing, /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e/sowing != /Users/barrysmith/Src/PETSc/arch-clang/conf/sowing sh: cd /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e && ./configure --prefix=/Users/barrysmith/Src/PETSc/arch-clang Executing: cd /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e && ./configure --prefix=/Users/barrysmith/Src/PETSc/arch-clang sh: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/local/texlive/2012/bin/x86_64-darwin//latex checking for gs... /opt/local/bin/gs checking for pnmcrop... /opt/local/bin/pnmcrop checking for pbmtoxbm... /opt/local/bin/pbmtoxbm checking for ppmtogif... /opt/local/bin/ppmtogif checking for pnmquant... /opt/local/bin/pnmquant checking for perl... /opt/local/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: include/sowingconfig.h is unchanged config.status: executing default commands sh: cd /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e && make && make install && make clean Executing: cd /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e && make && make install && make clean sh: (cd src/sys && make ) gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o ranlib ../../lib/libsowing.a (cd src/tohtml && make ) gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c tohtml.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c tex2html.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c search.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c texactio.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c rdaux.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c rdindx.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c label.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c scan.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c refmap.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c style.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c dimen.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c userdef.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c tabular.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c biblio.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c environ.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c math.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c rddefs.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c latexinfo.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c accent.c gcc -DPSPATH='"/Users/barrysmith/Src/PETSc/arch-clang/bin/"' -DBMSOURCE='"/Users/barrysmith/Src/PETSc/arch-clang/share/"' -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a (cd src/bfort && make ) gcc -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a (cd src/textfilt && make ) c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a (cd src/doctext && make ) c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a (cd src/textfilt && make ) make[1]: Nothing to be done for `ALL'. (cd src/mapnames && make ) c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a /usr/bin/install -c bin/bib2html /Users/barrysmith/Src/PETSc/arch-clang/bin/bib2html /usr/bin/install -c src/doctext/doctext /Users/barrysmith/Src/PETSc/arch-clang/bin/doctext /usr/bin/install -c src/doctext/doc2lt /Users/barrysmith/Src/PETSc/arch-clang/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /Users/barrysmith/Src/PETSc/arch-clang/bin/tohtml if [ "`cd bin && pwd`" != "`cd /Users/barrysmith/Src/PETSc/arch-clang/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /Users/barrysmith/Src/PETSc/arch-clang/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /Users/barrysmith/Src/PETSc/arch-clang/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /Users/barrysmith/Src/PETSc/arch-clang/bin/bfort /usr/bin/install -c src/mapnames/mapnames /Users/barrysmith/Src/PETSc/arch-clang/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /Users/barrysmith/Src/PETSc/arch-clang/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /Users/barrysmith/Src/PETSc/arch-clang/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /Users/barrysmith/Src/PETSc/arch-clang/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /Users/barrysmith/Src/PETSc/arch-clang/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /Users/barrysmith/Src/PETSc/arch-clang/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /Users/barrysmith/Src/PETSc/arch-clang/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /Users/barrysmith/Src/PETSc/arch-clang/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /Users/barrysmith/Src/PETSc/arch-clang/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /Users/barrysmith/Src/PETSc/arch-clang/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /Users/barrysmith/Src/PETSc/arch-clang/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /Users/barrysmith/Src/PETSc/arch-clang/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /Users/barrysmith/Src/PETSc/arch-clang/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /Users/barrysmith/Src/PETSc/arch-clang/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /Users/barrysmith/Src/PETSc/arch-clang/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /Users/barrysmith/Src/PETSc/arch-clang/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /Users/barrysmith/Src/PETSc/arch-clang/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /Users/barrysmith/Src/PETSc/arch-clang/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /Users/barrysmith/Src/PETSc/arch-clang/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /Users/barrysmith/Src/PETSc/arch-clang/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /Users/barrysmith/Src/PETSc/arch-clang/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /Users/barrysmith/Src/PETSc/arch-clang/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /Users/barrysmith/Src/PETSc/arch-clang/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /Users/barrysmith/Src/PETSc/arch-clang/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /Users/barrysmith/Src/PETSc/arch-clang/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /Users/barrysmith/Src/PETSc/arch-clang/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /Users/barrysmith/Src/PETSc/arch-clang/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /Users/barrysmith/Src/PETSc/arch-clang/share/man/man1/bfort.1 ;\ fi for dir in src docs ; do ( cd $dir && make clean ) ; done for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; make clean ) ; done rm -f *.o *~ /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && make clean ) /bin/rm -rf test[1-9] test1[0-9] test2[0-9] /bin/rm -f test[1-9].html latex.err up.xbm down.xbm. next.xbm /bin/rm -f test1[0-9].html test2[0-9].html /bin/rm -f test[0-9].htm test[1-2][0-9].htm /bin/rm -f previous.xbm *.hux img*.xbm /bin/rm -f inplace subfiles /bin/rm -f *.ler *.aux *.out /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then make clean ; fi ) /bin/rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit /bin/rm -f doctext\ win32/debug/* /bin/rm -f *.o *~ /bin/rm -f *.o *~ mapnames ccc rm -f tout.htm tout-bib.htm rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& make clean) rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf /bin/rm -f lib/libsowing.a lib/libtfilter.a sh: cp -f /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e/sowing /Users/barrysmith/Src/PETSc/arch-clang/conf/sowing Executing: cp -f /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e/sowing /Users/barrysmith/Src/PETSc/arch-clang/conf/sowing sh: sh: cp -f /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e/sowing /Users/barrysmith/Src/PETSc/arch-clang/conf/sowing Executing: cp -f /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e/sowing /Users/barrysmith/Src/PETSc/arch-clang/conf/sowing sh: sh: cp -f /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e/sowing /Users/barrysmith/Src/PETSc/arch-clang/conf/sowing Executing: cp -f /Users/barrysmith/Src/PETSc/externalpackages/sowing-1.1.16e/sowing /Users/barrysmith/Src/PETSc/arch-clang/conf/sowing sh: Defined make macro "BFORT " to "/Users/barrysmith/Src/PETSc/arch-clang/bin/bfort" Defined make macro "DOCTEXT " to "/Users/barrysmith/Src/PETSc/arch-clang/bin/doctext" Defined make macro "MAPNAMES " to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mapnames" Defined make macro "BIB2HTML " to "/Users/barrysmith/Src/PETSc/arch-clang/bin/bib2html" Checking for program /opt/local/bin/pdflatex...not found Checking for program /opt/local/sbin/pdflatex...not found Checking for program /Users/barrysmith/Src/petsc/bin/pdflatex...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/pdflatex...not found Checking for program /Users/barrysmith/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /opt/X11/bin/pdflatex...not found Checking for program /Users/barrysmith/Src/petsc-dev/bin/pdflatex...not found Checking for program /Users/barrysmith/bin/pdflatex...not found Checking for program /usr/local/texlive/2012/bin/x86_64-darwin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/local/texlive/2012/bin/x86_64-darwin/pdflatex" Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for headers Download SOWING: ['/Users/barrysmith/Src/PETSc/arch-clang/include'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.sowing(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C Running /Users/barrysmith/Src/PETSc/arch-clang/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.yaml(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.yaml(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PVODE(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PVODE(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pcbddc(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pcbddc(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.papi(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.papi(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pami(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pami(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.P3Dlib(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.P3Dlib(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.pthread(/Users/barrysmith/Src/PETSc/config/PETSc/packages/pthread.py:27) TESTING: configureLibrary from PETSc.packages.pthread(config/PETSc/packages/pthread.py:27) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Package specific search directory PTHREAD: ['libpthread.a'] ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function pthread_create in library ['libpthread.a'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); int main() { pthread_create() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lpthread -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lpthread -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBPTHREAD" to "1" Popping language C Checking for headers Package specific search directory PTHREAD: ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Checking include with compiler flags var CPPFLAGS ['/Users/barrysmith/Src/PETSc/arch-clang/include'] sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 55 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 56 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 58 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 35 "/usr/include/sched.h" 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 60 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 69 "/usr/include/time.h" 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_time_t time_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 61 "/usr/include/pthread.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_mach_port_t mach_port_t; typedef __darwin_sigset_t sigset_t; # 147 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 148 "/usr/include/pthread.h" 2 3 4 # 250 "/usr/include/pthread.h" 3 4 int pthread_atfork(void (*)(void), void (*)(void), void (*)(void)); int pthread_attr_destroy(pthread_attr_t *); int pthread_attr_getdetachstate(const pthread_attr_t *, int *); int pthread_attr_getguardsize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_getinheritsched(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getschedparam(const pthread_attr_t * restrict, struct sched_param * restrict); int pthread_attr_getschedpolicy(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getscope(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getstack(const pthread_attr_t * restrict, void ** restrict, size_t * restrict); int pthread_attr_getstackaddr(const pthread_attr_t * restrict, void ** restrict); int pthread_attr_getstacksize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_init(pthread_attr_t *); int pthread_attr_setdetachstate(pthread_attr_t *, int ); int pthread_attr_setguardsize(pthread_attr_t *, size_t ); int pthread_attr_setinheritsched(pthread_attr_t *, int ); int pthread_attr_setschedparam(pthread_attr_t * restrict, const struct sched_param * restrict); int pthread_attr_setschedpolicy(pthread_attr_t *, int ); int pthread_attr_setscope(pthread_attr_t *, int); int pthread_attr_setstack(pthread_attr_t *, void *, size_t ); int pthread_attr_setstackaddr(pthread_attr_t *, void *); int pthread_attr_setstacksize(pthread_attr_t *, size_t ); int pthread_cancel(pthread_t ) __asm("_" "pthread_cancel" ); int pthread_cond_broadcast(pthread_cond_t *); int pthread_cond_destroy(pthread_cond_t *); int pthread_cond_init(pthread_cond_t * restrict, const pthread_condattr_t * restrict) __asm("_" "pthread_cond_init" ); int pthread_cond_signal(pthread_cond_t *); int pthread_cond_timedwait(pthread_cond_t * restrict, pthread_mutex_t * restrict, const struct timespec * restrict) __asm("_" "pthread_cond_timedwait" ); int pthread_cond_wait(pthread_cond_t * restrict, pthread_mutex_t * restrict) __asm("_" "pthread_cond_wait" ); int pthread_condattr_destroy(pthread_condattr_t *); int pthread_condattr_init(pthread_condattr_t *); int pthread_condattr_getpshared(const pthread_condattr_t * restrict, int * restrict); int pthread_condattr_setpshared(pthread_condattr_t *, int ); int pthread_create(pthread_t * restrict, const pthread_attr_t * restrict, void *(*)(void *), void * restrict); int pthread_detach(pthread_t ); int pthread_equal(pthread_t , pthread_t ); void pthread_exit(void *) __attribute__((noreturn)); int pthread_getconcurrency(void); int pthread_getschedparam(pthread_t , int * restrict, struct sched_param * restrict); void *pthread_getspecific(pthread_key_t ); int pthread_join(pthread_t , void **) __asm("_" "pthread_join" ); int pthread_key_create(pthread_key_t *, void (*)(void *)); int pthread_key_delete(pthread_key_t ); int pthread_mutex_destroy(pthread_mutex_t *); int pthread_mutex_getprioceiling(const pthread_mutex_t * restrict, int * restrict); int pthread_mutex_init(pthread_mutex_t * restrict, const pthread_mutexattr_t * restrict); int pthread_mutex_lock(pthread_mutex_t *); int pthread_mutex_setprioceiling(pthread_mutex_t * restrict, int, int * restrict); int pthread_mutex_trylock(pthread_mutex_t *); int pthread_mutex_unlock(pthread_mutex_t *); int pthread_mutexattr_destroy(pthread_mutexattr_t *) __asm("_" "pthread_mutexattr_destroy" ); int pthread_mutexattr_getprioceiling(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getprotocol(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getpshared(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_gettype(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_init(pthread_mutexattr_t *); int pthread_mutexattr_setprioceiling(pthread_mutexattr_t *, int); int pthread_mutexattr_setprotocol(pthread_mutexattr_t *, int); int pthread_mutexattr_setpshared(pthread_mutexattr_t *, int ); int pthread_mutexattr_settype(pthread_mutexattr_t *, int); int pthread_once(pthread_once_t *, void (*)(void)); int pthread_rwlock_destroy(pthread_rwlock_t * ) __asm("_" "pthread_rwlock_destroy" ); int pthread_rwlock_init(pthread_rwlock_t * restrict, const pthread_rwlockattr_t * restrict) __asm("_" "pthread_rwlock_init" ); int pthread_rwlock_rdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_rdlock" ); int pthread_rwlock_tryrdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_tryrdlock" ); int pthread_rwlock_trywrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_trywrlock" ); int pthread_rwlock_wrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_wrlock" ); int pthread_rwlock_unlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_unlock" ); int pthread_rwlockattr_destroy(pthread_rwlockattr_t *); int pthread_rwlockattr_getpshared(const pthread_rwlockattr_t * restrict, int * restrict); int pthread_rwlockattr_init(pthread_rwlockattr_t *); int pthread_rwlockattr_setpshared(pthread_rwlockattr_t *, int ); pthread_t pthread_self(void); int pthread_setcancelstate(int , int *) __asm("_" "pthread_setcancelstate" ); int pthread_setcanceltype(int , int *) __asm("_" "pthread_setcanceltype" ); int pthread_setconcurrency(int); int pthread_setschedparam(pthread_t , int , const struct sched_param *); int pthread_setspecific(pthread_key_t , const void *); void pthread_testcancel(void) __asm("_" "pthread_testcancel" ); int pthread_is_threaded_np(void); int pthread_threadid_np(pthread_t,__uint64_t*) __attribute__((availability(macosx,introduced=10.6))); int pthread_rwlock_longrdlock_np(pthread_rwlock_t *) __attribute__((availability(macosx,introduced=10.7))); int pthread_rwlock_yieldwrlock_np(pthread_rwlock_t *) __attribute__((availability(macosx,introduced=10.7))); int pthread_rwlock_downgrade_np(pthread_rwlock_t *); int pthread_rwlock_upgrade_np(pthread_rwlock_t *); int pthread_rwlock_tryupgrade_np(pthread_rwlock_t *); int pthread_rwlock_held_np(pthread_rwlock_t *); int pthread_rwlock_rdheld_np(pthread_rwlock_t *); int pthread_rwlock_wrheld_np(pthread_rwlock_t *); int pthread_getname_np(pthread_t,char*,size_t) __attribute__((availability(macosx,introduced=10.6))); int pthread_setname_np(const char*) __attribute__((availability(macosx,introduced=10.6))); int pthread_main_np(void); mach_port_t pthread_mach_thread_np(pthread_t); size_t pthread_get_stacksize_np(pthread_t); void * pthread_get_stackaddr_np(pthread_t); int pthread_cond_signal_thread_np(pthread_cond_t *, pthread_t); int pthread_cond_timedwait_relative_np(pthread_cond_t *, pthread_mutex_t *, const struct timespec *); int pthread_create_suspended_np(pthread_t *, const pthread_attr_t *, void *(*)(void *), void *); int pthread_kill(pthread_t, int); pthread_t pthread_from_mach_thread_np(mach_port_t) __attribute__((availability(macosx,introduced=10.5))); int pthread_sigmask(int, const sigset_t *, sigset_t *) __asm("_" "pthread_sigmask" ); void pthread_yield_np(void); # 4 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" Found header files ['pthread.h'] in ['/Users/barrysmith/Src/PETSc/arch-clang/include'] Popping language C All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c:6:1: error: unknown type name 'pthread_barrier_t'; did you mean 'pthread_attr_t'? pthread_barrier_t *a; ^~~~~~~~~~~~~~~~~ pthread_attr_t /usr/include/pthread.h:64:34: note: 'pthread_attr_t' declared here typedef __darwin_pthread_attr_t pthread_attr_t; ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread/conftest.c" 2 # 1 "/usr/include/sys/sysctl.h" 1 3 4 # 79 "/usr/include/sys/sysctl.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 80 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 82 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 68 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 69 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 70 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/time.h" 2 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; struct itimerval { struct timeval it_interval; struct timeval it_value; }; # 144 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 187 "/usr/include/sys/time.h" 3 4 struct clockinfo { int hz; int tick; int tickadj; int stathz; int profhz; }; # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 199 "/usr/include/sys/time.h" 2 3 4 int adjtime(const struct timeval *, struct timeval *); int futimes(int, const struct timeval *); int lutimes(const char *, const struct timeval *) __attribute__((availability(macosx,introduced=10.5))); int settimeofday(const struct timeval *, const struct timezone *); int getitimer(int, struct itimerval *); int gettimeofday(struct timeval * restrict, void * restrict); # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, struct timeval * restrict) __asm("_" "select" "$1050") ; # 214 "/usr/include/sys/time.h" 2 3 4 int setitimer(int, const struct itimerval * restrict, struct itimerval * restrict); int utimes(const char *, const struct timeval *); # 83 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/ucred.h" 1 3 4 # 75 "/usr/include/sys/ucred.h" 3 4 # 1 "/usr/include/sys/param.h" 1 3 4 # 86 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 78 "/usr/include/i386/types.h" 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 235 "/usr/include/sys/types.h" 3 4 typedef __darwin_ssize_t ssize_t; # 245 "/usr/include/sys/types.h" 3 4 typedef __darwin_useconds_t useconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 87 "/usr/include/sys/param.h" 2 3 4 # 96 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 97 "/usr/include/sys/param.h" 2 3 4 # 110 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/machine/param.h" 1 3 4 # 35 "/usr/include/machine/param.h" 3 4 # 1 "/usr/include/i386/param.h" 1 3 4 # 75 "/usr/include/i386/param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 76 "/usr/include/i386/param.h" 2 3 4 # 36 "/usr/include/machine/param.h" 2 3 4 # 111 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/limits.h" 1 3 4 # 38 "/usr/bin/../lib/clang/5.0/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 64 "/usr/include/limits.h" 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 39 "/usr/bin/../lib/clang/5.0/include/limits.h" 2 3 4 # 114 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 162 "/usr/include/sys/signal.h" 3 4 typedef __darwin_sigset_t sigset_t; # 175 "/usr/include/sys/signal.h" 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 407 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/param.h" 2 3 4 # 76 "/usr/include/sys/ucred.h" 2 3 4 # 1 "/usr/include/bsm/audit.h" 1 3 4 # 172 "/usr/include/bsm/audit.h" 3 4 typedef uid_t au_id_t; typedef pid_t au_asid_t; typedef u_int16_t au_event_t; typedef u_int16_t au_emod_t; typedef u_int32_t au_class_t; typedef u_int64_t au_asflgs_t __attribute__ ((aligned (8))); struct au_tid { dev_t port; u_int32_t machine; }; typedef struct au_tid au_tid_t; struct au_tid_addr { dev_t at_port; u_int32_t at_type; u_int32_t at_addr[4]; }; typedef struct au_tid_addr au_tid_addr_t; struct au_mask { unsigned int am_success; unsigned int am_failure; }; typedef struct au_mask au_mask_t; struct auditinfo { au_id_t ai_auid; au_mask_t ai_mask; au_tid_t ai_termid; au_asid_t ai_asid; }; typedef struct auditinfo auditinfo_t; struct auditinfo_addr { au_id_t ai_auid; au_mask_t ai_mask; au_tid_addr_t ai_termid; au_asid_t ai_asid; au_asflgs_t ai_flags; }; typedef struct auditinfo_addr auditinfo_addr_t; struct auditpinfo { pid_t ap_pid; au_id_t ap_auid; au_mask_t ap_mask; au_tid_t ap_termid; au_asid_t ap_asid; }; typedef struct auditpinfo auditpinfo_t; struct auditpinfo_addr { pid_t ap_pid; au_id_t ap_auid; au_mask_t ap_mask; au_tid_addr_t ap_termid; au_asid_t ap_asid; au_asflgs_t ap_flags; }; typedef struct auditpinfo_addr auditpinfo_addr_t; struct au_session { auditinfo_addr_t *as_aia_p; au_mask_t as_mask; }; typedef struct au_session au_session_t; typedef struct au_token token_t; # 253 "/usr/include/bsm/audit.h" 3 4 struct au_qctrl { int aq_hiwater; int aq_lowater; int aq_bufsz; int aq_delay; int aq_minfree; }; typedef struct au_qctrl au_qctrl_t; struct audit_stat { unsigned int as_version; unsigned int as_numevent; int as_generated; int as_nonattrib; int as_kernel; int as_audit; int as_auditctl; int as_enqueue; int as_written; int as_wblocked; int as_rblocked; int as_dropped; int as_totalsize; unsigned int as_memused; }; typedef struct audit_stat au_stat_t; struct audit_fstat { u_int64_t af_filesz; u_int64_t af_currsz; }; typedef struct audit_fstat au_fstat_t; struct au_evclass_map { au_event_t ec_number; au_class_t ec_class; }; typedef struct au_evclass_map au_evclass_map_t; int audit(const void *, int); int auditon(int, void *, int); int auditctl(const char *); int getauid(au_id_t *); int setauid(const au_id_t *); int getaudit_addr(struct auditinfo_addr *, int); int setaudit_addr(const struct auditinfo_addr *, int); # 325 "/usr/include/bsm/audit.h" 3 4 int getaudit(struct auditinfo *) __attribute__((availability(macosx,introduced=10.0,deprecated=10.8))); int setaudit(const struct auditinfo *) __attribute__((availability(macosx,introduced=10.0,deprecated=10.8))); # 338 "/usr/include/bsm/audit.h" 3 4 # 1 "/usr/include/mach/port.h" 1 3 4 # 90 "/usr/include/mach/port.h" 3 4 # 1 "/usr/bin/../lib/clang/5.0/include/stdint.h" 1 3 4 # 33 "/usr/bin/../lib/clang/5.0/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 40 "/usr/include/stdint.h" 3 4 typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 97 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 34 "/usr/bin/../lib/clang/5.0/include/stdint.h" 2 3 4 # 91 "/usr/include/mach/port.h" 2 3 4 # 1 "/usr/include/mach/boolean.h" 1 3 4 # 73 "/usr/include/mach/boolean.h" 3 4 # 1 "/usr/include/mach/machine/boolean.h" 1 3 4 # 33 "/usr/include/mach/machine/boolean.h" 3 4 # 1 "/usr/include/mach/i386/boolean.h" 1 3 4 # 69 "/usr/include/mach/i386/boolean.h" 3 4 typedef unsigned int boolean_t; # 34 "/usr/include/mach/machine/boolean.h" 2 3 4 # 74 "/usr/include/mach/boolean.h" 2 3 4 # 92 "/usr/include/mach/port.h" 2 3 4 # 1 "/usr/include/mach/machine/vm_types.h" 1 3 4 # 33 "/usr/include/mach/machine/vm_types.h" 3 4 # 1 "/usr/include/mach/i386/vm_types.h" 1 3 4 # 73 "/usr/include/mach/i386/vm_types.h" 3 4 # 1 "/usr/include/mach/i386/vm_param.h" 1 3 4 # 74 "/usr/include/mach/i386/vm_types.h" 2 3 4 # 93 "/usr/include/mach/i386/vm_types.h" 3 4 typedef __darwin_natural_t natural_t; typedef int integer_t; typedef uintptr_t vm_offset_t; # 112 "/usr/include/mach/i386/vm_types.h" 3 4 typedef uintptr_t vm_size_t; # 124 "/usr/include/mach/i386/vm_types.h" 3 4 typedef uint64_t mach_vm_address_t; typedef uint64_t mach_vm_offset_t; typedef uint64_t mach_vm_size_t; typedef uint64_t vm_map_offset_t; Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from PETSc.packages.pthread(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.pthread(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pthreadclasses(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pthreadclasses(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.openmp(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.openmp(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opencl(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.opencl(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.viennacl(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.viennacl(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PTScotch(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PTScotch(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Numpy(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Numpy(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpe(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.mpe(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/Users/barrysmith/Src/PETSc/config/PETSc/packages/Matlab.py:36) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(config/PETSc/packages/Matlab.py:36) ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MatlabEngine(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.MatlabEngine(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Mathematica(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Mathematica(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Disabled Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hwloc(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.hwloc(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opengl(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.opengl(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.glut(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.glut(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Generator(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Generator(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FFC(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.FFC(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.expat(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.expat(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.cuda(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.cuda(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ctetgen(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ctetgen(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Suggar(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Suggar(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Checking for program /opt/local/bin/cmake...not found Checking for program /opt/local/sbin/cmake...not found Checking for program /Users/barrysmith/Src/petsc/bin/cmake...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/cmake...not found Checking for program /Users/barrysmith/bin/cmake...not found Checking for program /usr/bin/cmake...found Defined make macro "CMAKE" to "/usr/bin/cmake" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.metis(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.metis(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.parmetis(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.parmetis(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default PETSc clone, checking for c2html Checking for program /opt/local/bin/c2html...not found Checking for program /opt/local/sbin/c2html...not found Checking for program /Users/barrysmith/Src/petsc/bin/c2html...not found Checking for program /Developer/NVIDIA/CUDA-5.5/bin/c2html...not found Checking for program /Users/barrysmith/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /usr/local/bin/c2html...found Defined make macro "C2HTML" to "/usr/local/bin/c2html" Defined make macro "C2HTML " to "/usr/local/bin/c2html" Found c2html, will not install c2html ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.babel(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.java(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.java(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ams(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ams(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.server(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.server(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.X(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:480) TESTING: configureLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:480) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Package specific search directory X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function XSetWMName in library ['libX11.a'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); int main() { XSetWMName() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); int main() { XSetWMName() ; return 0; } Popping language C Checking for library in Package specific search directory X: ['lib64/libX11.a'] ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function XSetWMName in library ['lib64/libX11.a'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); int main() { XSetWMName() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); int main() { XSetWMName() ; return 0; } Popping language C Checking for library in Package specific search directory X: ['/opt/X11/lib/libX11.a'] Contents: ['bin', 'etc', 'include', 'lib', 'share', 'var'] ================================================================================ TEST check from config.libraries(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function XSetWMName in library ['/opt/X11/lib/libX11.a'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); int main() { XSetWMName() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/opt/X11/lib -L/opt/X11/lib -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/opt/X11/lib -L/opt/X11/lib -lX11 -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBX11" to "1" Popping language C Checking for headers Package specific search directory X: ['/opt/X11/include', '/Users/barrysmith/Src/PETSc/arch-clang/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/barrysmith/Src/PETSc/arch-clang/include'] Checking include with compiler flags var CPPFLAGS ['/opt/X11/include', '/Users/barrysmith/Src/PETSc/arch-clang/include'] sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/opt/X11/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/opt/X11/include -I/Users/barrysmith/Src/PETSc/arch-clang/include /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c sh: # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 162 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/confdefs.h" 1 # 2 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conffix.h" 1 # 3 "/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers/conftest.c" 2 # 1 "/opt/X11/include/X11/Xlib.h" 1 # 38 "/opt/X11/include/X11/Xlib.h" # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 184 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 39 "/opt/X11/include/X11/Xlib.h" 2 # 1 "/opt/X11/include/X11/X.h" 1 # 66 "/opt/X11/include/X11/X.h" typedef unsigned long XID; typedef unsigned long Mask; typedef unsigned long Atom; typedef unsigned long VisualID; typedef unsigned long Time; # 96 "/opt/X11/include/X11/X.h" typedef XID Window; typedef XID Drawable; typedef XID Font; typedef XID Pixmap; typedef XID Cursor; typedef XID Colormap; typedef XID GContext; typedef XID KeySym; typedef unsigned char KeyCode; # 45 "/opt/X11/include/X11/Xlib.h" 2 # 1 "/opt/X11/include/X11/Xfuncproto.h" 1 # 48 "/opt/X11/include/X11/Xlib.h" 2 # 1 "/opt/X11/include/X11/Xosdefs.h" 1 # 49 "/opt/X11/include/X11/Xlib.h" 2 # 1 "/usr/bin/../lib/clang/5.0/include/stddef.h" 1 3 4 # 34 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 62 "/usr/bin/../lib/clang/5.0/include/stddef.h" 3 4 typedef int wchar_t; # 52 "/opt/X11/include/X11/Xlib.h" 2 # 69 "/opt/X11/include/X11/Xlib.h" extern int _Xmblen( char *str, int len ); typedef char *XPointer; # 156 "/opt/X11/include/X11/Xlib.h" typedef struct _XExtData { int number; struct _XExtData *next; int (*free_private)( struct _XExtData *extension ); XPointer private_data; } XExtData; typedef struct { int extension; int major_opcode; int first_event; int first_error; } XExtCodes; typedef struct { int depth; int bits_per_pixel; int scanline_pad; } XPixmapFormatValues; typedef struct { int function; unsigned long plane_mask; unsigned long foreground; unsigned long background; int line_width; int line_style; int cap_style; int join_style; int fill_style; int fill_rule; int arc_mode; Pixmap tile; Pixmap stipple; int ts_x_origin; int ts_y_origin; Font font; int subwindow_mode; int graphics_exposures; int clip_x_origin; int clip_y_origin; Pixmap clip_mask; int dash_offset; char dashes; } XGCValues; typedef struct _XGC *GC; typedef struct { XExtData *ext_data; VisualID visualid; int class; unsigned long red_mask, green_mask, blue_mask; int bits_per_rgb; int map_entries; } Visual; typedef struct { int depth; int nvisuals; Visual *visuals; } Depth; struct _XDisplay; typedef struct { XExtData *ext_data; struct _XDisplay *display; Window root; int width, height; int mwidth, mheight; int ndepths; Depth *depths; int root_depth; Visual *root_visual; GC default_gc; Colormap cmap; unsigned long white_pixel; unsigned long black_pixel; int max_maps, min_maps; int backing_store; int save_unders; long root_input_mask; } Screen; typedef struct { XExtData *ext_data; int depth; int bits_per_pixel; int scanline_pad; } ScreenFormat; typedef struct { Pixmap background_pixmap; unsigned long background_pixel; Pixmap border_pixmap; unsigned long border_pixel; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; long event_mask; long do_not_propagate_mask; int override_redirect; Colormap colormap; Cursor cursor; } XSetWindowAttributes; typedef struct { int x, y; int width, height; int border_width; int depth; Visual *visual; Window root; int class; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; Colormap colormap; int map_installed; int map_state; long all_event_masks; long your_event_mask; long do_not_propagate_mask; int override_redirect; Screen *screen; } XWindowAttributes; typedef struct { int family; int length; char *address; } XHostAddress; typedef struct { int typelength; int valuelength; char *type; char *value; } XServerInterpretedAddress; typedef struct _XImage { int width, height; int xoffset; int format; char *data; int byte_order; int bitmap_unit; int bitmap_bit_order; int bitmap_pad; int depth; int bytes_per_line; int bits_per_pixel; unsigned long red_mask; unsigned long green_mask; unsigned long blue_mask; XPointer obdata; struct funcs { struct _XImage *(*create_image)( struct _XDisplay* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); int (*destroy_image) (struct _XImage *); unsigned long (*get_pixel) (struct _XImage *, int, int); int (*put_pixel) (struct _XImage *, int, int, unsigned long); struct _XImage *(*sub_image)(struct _XImage *, int, int, unsigned int, unsigned int); int (*add_pixel) (struct _XImage *, long); } f; } XImage; typedef struct { int x, y; int width, height; int border_width; Window sibling; int stack_mode; } XWindowChanges; typedef struct { unsigned long pixel; unsigned short red, green, blue; char flags; char pad; } XColor; typedef struct { short x1, y1, x2, y2; } XSegment; typedef struct { short x, y; } XPoint; typedef struct { short x, y; unsigned short width, height; } XRectangle; typedef struct { short x, y; unsigned short width, height; short angle1, angle2; } XArc; typedef struct { int key_click_percent; int bell_percent; int bell_pitch; int bell_duration; int led; int led_mode; int key; int auto_repeat_mode; } XKeyboardControl; typedef struct { int key_click_percent; int bell_percent; unsigned int bell_pitch, bell_duration; unsigned long led_mask; int global_auto_repeat; char auto_repeats[32]; } XKeyboardState; typedef struct { Time time; short x, y; } XTimeCoord; typedef struct { int max_keypermod; KeyCode *modifiermap; } XModifierKeymap; # 495 "/opt/X11/include/X11/Xlib.h" typedef struct _XDisplay Display; struct _XPrivate; struct _XrmHashBucketRec; typedef struct { XExtData *ext_data; struct _XPrivate *private1; int fd; int private2; int proto_major_version; int proto_minor_version; char *vendor; XID private3; XID private4; XID private5; int private6; XID (*resource_alloc)( struct _XDisplay* ); int byte_order; int bitmap_unit; int bitmap_pad; int bitmap_bit_order; int nformats; ScreenFormat *pixmap_format; int private8; int release; struct _XPrivate *private9, *private10; int qlen; unsigned long last_request_read; unsigned long request; XPointer private11; XPointer private12; XPointer private13; XPointer private14; unsigned max_request_size; struct _XrmHashBucketRec *db; int (*private15)( struct _XDisplay* ); char *display_name; int default_screen; int nscreens; Screen *screens; unsigned long motion_buffer; unsigned long private16; int min_keycode; int max_keycode; XPointer private17; XPointer private18; int private19; char *xdefaults; } *_XPrivDisplay; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int keycode; int same_screen; } XKeyEvent; typedef XKeyEvent XKeyPressedEvent; typedef XKeyEvent XKeyReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int button; int same_screen; } XButtonEvent; typedef XButtonEvent XButtonPressedEvent; typedef XButtonEvent XButtonReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; char is_hint; int same_screen; } XMotionEvent; typedef XMotionEvent XPointerMovedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; int mode; int detail; int same_screen; int focus; unsigned int state; } XCrossingEvent; typedef XCrossingEvent XEnterWindowEvent; typedef XCrossingEvent XLeaveWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int mode; int detail; } XFocusChangeEvent; typedef XFocusChangeEvent XFocusInEvent; typedef XFocusChangeEvent XFocusOutEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; char key_vector[32]; } XKeymapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int x, y; int width, height; int count; } XExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int x, y; int width, height; int count; int major_code; int minor_code; } XGraphicsExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int major_code; int minor_code; } XNoExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int state; } XVisibilityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; int override_redirect; } XCreateWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; } XDestroyWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int from_configure; } XUnmapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int override_redirect; } XMapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; } XMapRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; Window parent; int x, y; int override_redirect; } XReparentEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; int width, height; int border_width; Window above; int override_redirect; } XConfigureEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; } XGravityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int width, height; } XResizeRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; Window above; int detail; unsigned long value_mask; } XConfigureRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int place; } XCirculateEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int place; } XCirculateRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom atom; Time time; int state; } XPropertyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom selection; Time time; } XSelectionClearEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window owner; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Colormap colormap; int new; int state; } XColormapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom message_type; int format; union { char b[20]; short s[10]; long l[5]; } data; } XClientMessageEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int request; int first_keycode; int count; } XMappingEvent; typedef struct { int type; Display *display; XID resourceid; unsigned long serial; unsigned char error_code; unsigned char request_code; unsigned char minor_code; } XErrorEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; } XAnyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; } XGenericEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; unsigned int cookie; void *data; } XGenericEventCookie; typedef union _XEvent { int type; XAnyEvent xany; XKeyEvent xkey; XButtonEvent xbutton; XMotionEvent xmotion; XCrossingEvent xcrossing; XFocusChangeEvent xfocus; XExposeEvent xexpose; XGraphicsExposeEvent xgraphicsexpose; XNoExposeEvent xnoexpose; XVisibilityEvent xvisibility; XCreateWindowEvent xcreatewindow; XDestroyWindowEvent xdestroywindow; XUnmapEvent xunmap; XMapEvent xmap; XMapRequestEvent xmaprequest; XReparentEvent xreparent; XConfigureEvent xconfigure; XGravityEvent xgravity; XResizeRequestEvent xresizerequest; XConfigureRequestEvent xconfigurerequest; XCirculateEvent xcirculate; XCirculateRequestEvent xcirculaterequest; XPropertyEvent xproperty; XSelectionClearEvent xselectionclear; XSelectionRequestEvent xselectionrequest; XSelectionEvent xselection; XColormapEvent xcolormap; XClientMessageEvent xclient; XMappingEvent xmapping; XErrorEvent xerror; XKeymapEvent xkeymap; XGenericEvent xgeneric; XGenericEventCookie xcookie; long pad[24]; } XEvent; typedef struct { short lbearing; short rbearing; short width; short ascent; short descent; unsigned short attributes; } XCharStruct; typedef struct { Atom name; unsigned long card32; } XFontProp; typedef struct { XExtData *ext_data; Font fid; unsigned direction; unsigned min_char_or_byte2; unsigned max_char_or_byte2; unsigned min_byte1; unsigned max_byte1; int all_chars_exist; unsigned default_char; int n_properties; XFontProp *properties; XCharStruct min_bounds; XCharStruct max_bounds; XCharStruct *per_char; int ascent; int descent; } XFontStruct; typedef struct { char *chars; int nchars; int delta; Font font; } XTextItem; typedef struct { unsigned char byte1; unsigned char byte2; } XChar2b; typedef struct { XChar2b *chars; int nchars; int delta; Font font; } XTextItem16; typedef union { Display *display; Found header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/barrysmith/Src/PETSc/arch-clang/include'] Popping language C ================================================================================ TEST checkSharedLibrary from PETSc.packages.X(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:534) TESTING: checkSharedLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:534) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Zoltan(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Zoltan(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.afterimage(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.afterimage(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/Users/barrysmith/Src/PETSc/config/PETSc/utilities/Regression.py:32) TESTING: configureRegression from PETSc.utilities.Regression(config/PETSc/utilities/Regression.py:32) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C C_X Fortran X F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex" ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:441) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:441) ================================================================================ Checking for a functional BLAS and LAPACK in IRIX Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:113) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:113) Checking for BLAS and LAPACK symbols Checking for function ddot_ in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for no name mangling on BLAS/LAPACK Checking for function ddot in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Popping language C Checking for function dgetrs in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Popping language C Checking for function dgeev in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for function ddot_ in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for function dgetrs_ in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for function dgeev_ in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C Checking for function df2cblaslapack311_id in library ['libcomplib.sgimath.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcomplib.sgimath clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcomplib.sgimath -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Another IRIX Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:113) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:113) Checking for BLAS and LAPACK symbols Checking for function ddot_ in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for no name mangling on BLAS/LAPACK Checking for function ddot in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Popping language C Checking for function dgetrs in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Popping language C Checking for function dgeev in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for function ddot_ in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for function dgetrs_ in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for function dgeev_ in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C Checking for function df2cblaslapack311_id in library ['libscs.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lscs clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lscs -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Compaq/Alpha Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:113) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:113) Checking for BLAS and LAPACK symbols Checking for function ddot_ in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for no name mangling on BLAS/LAPACK Checking for function ddot in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Popping language C Checking for function dgetrs in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Popping language C Checking for function dgeev in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for function ddot_ in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for function dgetrs_ in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for function dgeev_ in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C Checking for function df2cblaslapack311_id in library ['libcxml.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lcxml clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lcxml -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:113) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:113) Checking for BLAS and LAPACK symbols Checking for function ddot_ in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for no name mangling on BLAS/LAPACK Checking for function ddot in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Popping language C Checking for function dgetrs in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Popping language C Checking for function dgeev in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for function ddot_ in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for function dgetrs_ in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for function dgeev_ in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C Checking for function df2cblaslapack311_id in library ['libessl.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lessl clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lessl -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in IBM ESSL Mathematics library for Blue Gene ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:113) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:113) Checking for BLAS and LAPACK symbols Checking for function ddot_ in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for no name mangling on BLAS/LAPACK Checking for function ddot in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Popping language C Checking for function dgetrs in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Popping language C Checking for function dgeev in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for function ddot_ in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for function dgetrs_ in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for function dgeev_ in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C Checking for function df2cblaslapack311_id in library ['libesslbg.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {ld: library not found for -lesslbg clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lesslbg -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler libraries ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:113) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:113) Checking for BLAS and LAPACK symbols Checking for function ddot_ in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ddot_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ddot_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for no name mangling on BLAS/LAPACK Checking for function ddot in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ddot", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ddot", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); int main() { ddot() ; return 0; } Popping language C Checking for function dgetrs in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_dgetrs", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_dgetrs", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); int main() { dgetrs() ; return 0; } Popping language C Checking for function dgeev in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_dgeev", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_dgeev", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); int main() { dgeev() ; return 0; } Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for function ddot_ in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ddot_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ddot_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking for function dgetrs_ in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_dgetrs_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_dgetrs_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Popping language C Checking for function dgeev_ in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_dgeev_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_dgeev_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Popping language C Checking for function df2cblaslapack311_id in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_df2cblaslapack311_id", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_df2cblaslapack311_id", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:113) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:113) Checking for BLAS and LAPACK symbols Checking for function ddot_ in library ['libblas.a'] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBBLAS" to "1" Popping language C Checking for function dgetrs_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Found Fortran mangling on BLAS/LAPACK which is underscore Checking for function df2cblaslapack311_id in library ['libblas.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lblas -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lblas -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_df2cblaslapack311_id", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_df2cblaslapack311_id", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -lblas -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char df2cblaslapack311_id(); int main() { df2cblaslapack311_id() ; return 0; } Popping language C Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:554) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:554) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:500) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:500) Check for the IBM ESSL library Checking for function iessl in library ['liblapack.a'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_iessl", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_iessl", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:506) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:506) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for function ipessl in library ['liblapack.a'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); int main() { ipessl() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ipessl", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ipessl", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); int main() { ipessl() ; return 0; } Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:512) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:512) Check for missing LAPACK routines Checking for function dtrsen_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtrsen_(); int main() { dtrsen_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgerfs_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgerfs_(); int main() { dgerfs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgges_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgges_(); int main() { dgges_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dtgsen_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtgsen_(); int main() { dtgsen_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgesvd_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgesvd_(); int main() { dgesvd_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgetrf_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrf_(); int main() { dgetrf_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgetrs_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); int main() { dgetrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgeev_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); int main() { dgeev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgelss_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); int main() { dgelss_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dsyev_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dsyev_(); int main() { dsyev_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dsyevx_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dsyevx_(); int main() { dsyevx_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dsygv_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dsygv_(); int main() { dsygv_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dsygvx_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dsygvx_(); int main() { dsygvx_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dpotrf_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dpotrf_(); int main() { dpotrf_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dpotrs_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dpotrs_(); int main() { dpotrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dstebz_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dstebz_(); int main() { dstebz_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dpttrf_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dpttrf_(); int main() { dpttrf_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dpttrs_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dpttrs_(); int main() { dpttrs_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dstein_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dstein_(); int main() { dstein_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dorgqr_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dorgqr_(); int main() { dorgqr_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgeqrf_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeqrf_(); int main() { dgeqrf_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgesv_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgesv_(); int main() { dgesv_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dhseqr_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dhseqr_(); int main() { dhseqr_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dgeqrf_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeqrf_(); int main() { dgeqrf_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C Checking for function dsteqr_ in library ['liblapack.a'] ['libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dsteqr_(); int main() { dsteqr_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/packages/BlasLapack.py:532) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:532) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for function lsame_ in library ['liblapack.a', 'libblas.a', '-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); int main() { lsame_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -llapack -lblas -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_LIBLAPACK" to "1" Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBMPICHF90" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBGCC_EXT_10_5" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBM" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.UMFPACK(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.UMFPACK(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.CHOLMOD(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from config.packages.CHOLMOD(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_MT(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_MT(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.spai(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PaStiX(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.PaStiX(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pARMS(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.pARMS(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.oski(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.oski(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.scalapack(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.scalapack(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.ml(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.elemental(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.elemental(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.clique(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/package.py:538) TESTING: alternateConfigureLibrary from PETSc.packages.clique(config/BuildSystem/config/package.py:538) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureCPURelax from config.atomics(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/Users/barrysmith/Src/PETSc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:736) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:736) All intermediate test results are stored in /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } Defined "RTLD_DEFAULT" to "1" ================================================================================ TEST configurePrefetch from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:583) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:583) Sees if there are any prefetch functions supported sh: uname -s Executing: uname -s sh: Darwin Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language C ================================================================================ TEST configureUnused from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:653) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:653) Sees if __attribute((unused)) is supported Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:7:5: warning: unused variable 'j' [-Wunused-variable] int j = myfunc(&i); ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "UNUSED" to "__attribute((unused))" Popping language C ================================================================================ TEST configureDeprecated from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:665) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:665) Check if __attribute((deprecated)) is supported Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:3:38: warning: unused function 'myfunc' [-Wunused-function] __attribute((deprecated)) static int myfunc(void) { return 1;} ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to "__attribute((deprecated))" Popping language C ================================================================================ TEST configureExpect from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:685) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:685) Sees if the __builtin_expect directive is supported Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_BUILTIN_EXPECT" to "1" Popping language C ================================================================================ TEST configureFunctionName from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:692) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:692) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language C Defined "FUNCTION_NAME_C" to "__func__" Pushing language Cxx sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.cc Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:714) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:714) Determine what to use for uintptr_t Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:6:18: warning: unused variable 'i' [-Wunused-variable] int x; uintptr_t i = (uintptr_t)&x;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language C ================================================================================ TEST configureSolaris from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:741) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:741) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:754) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:754) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:760) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:760) Win32 non-cygwin specific stuff Checking for function GetComputerName in library ['Kernel32.lib'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetComputerName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for function GetComputerName in library ['kernel32'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetComputerName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for function GetUserName in library ['Advapi32.lib'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetUserName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for function GetUserName in library ['advapi32'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetUserName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for function GetDC in library ['User32.lib'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetDC(0);; return 0; } Compile failed inside link Popping language C Checking for function GetDC in library ['user32'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetDC(0);; return 0; } Compile failed inside link Popping language C Checking for function CreateCompatibleDC in library ['Gdi32.lib'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { CreateCompatibleDC(0);; return 0; } Compile failed inside link Popping language C Checking for function CreateCompatibleDC in library ['gdi32'] [] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { CreateCompatibleDC(0);; return 0; } Compile failed inside link Popping language C Checking for type: int32_t sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types/conftest.c:13:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:6:7: warning: unused variable 'u' [-Wunused-variable] uid_t u; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:8:5: warning: unused variable 'a' [-Wunused-variable] int a=R_OK; ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:3:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:3:10: fatal error: 'Windows.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:827) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:827) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html sh: uname -s Executing: uname -s sh: Darwin ================================================================================ TEST configureDefaultArch from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:843) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:843) ================================================================================ TEST configureScript from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:860) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:860) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:895) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:895) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['-@echo "Now to check if the libraries are working do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:909) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:909) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:914) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:914) Checking for function flush_ in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush_(); int main() { flush_() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_flush_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_flush_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush_(); int main() { flush_() ; return 0; } Popping language C Checking for function flush__ in library [''] ['-L/Users/barrysmith/Src/PETSc/arch-clang/lib', '-L/usr/lib/clang/5.0/lib/darwin', '-lmpichf90', '-lgfortran', '-L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1', '-L/usr/local/lib', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush__(); int main() { flush__() ; return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_flush__", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_flush__", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) } Pushing language C Popping language C in /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush__(); int main() { flush__() ; return 0; } Popping language C ================================================================================ TEST configureFeatureTestMacros from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:639) TESTING: configureFeatureTestMacros from PETSc.Configure(config/PETSc/Configure.py:639) Checks if certain feature test macros are support sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^ 1 error generated. } Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 1 warning and 2 errors generated. } Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST configureAtoll from PETSc.Configure(/Users/barrysmith/Src/PETSc/config/PETSc/Configure.py:648) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:648) Checks if atoll exists sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c:7:6: warning: unused variable 'v' [-Wunused-variable] long v = atoll("25"); ^ 1 warning generated. } Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -L/Users/barrysmith/Src/PETSc/arch-clang/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -L/usr/bin/../lib/clang/5.0/lib/darwin -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl sh: Defined "HAVE_ATOLL" to "1" Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " Popping language C Defined make macro "CPP_FLAGS" to " " Pushing language C Defined make macro "PCC" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc" Defined make macro "PCC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0" Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -V Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -V sh: Defined make macro "FC_LINKER" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g" Defined make macro "DARWIN_COMMONS_USE_DYLIBS" to " -Wl,-commons,use_dylibs " Popping language FC Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Pushing language C Defined make macro "SL_LINKER" to "/Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language C Defined make macro "SL_LINKER_SUFFIX" to "dylib" Defined "SLSUFFIX" to ""dylib"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" sh: CC -VV Executing: CC -VV sh: Defined "USE_SOCKET_VIEWER" to "1" sh: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c Executing: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -c -o /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.o -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.headers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.cacheDetails -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.getResidentSetSize -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.missing -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.utilities.scalarTypes -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.setCompilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.functions -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.compilers -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.valgrind -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.packages.MPI -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.packages.pthread -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.atomics -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.types -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/config.libraries -I/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 /var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gq/T/petsc-AuxGCz/PETSc.Configure/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-llapack -lblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-L/opt/X11/lib -lX11" Defined make macro "X_INCLUDE" to "-I/opt/X11/include" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "-lpthread" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_VALGRIND" to "1" Defined make macro "VALGRIND_LIB" to "" Defined make macro "VALGRIND_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/Users/barrysmith/Src/PETSc/arch-clang/include" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpetsc -llapack -lblas -L/opt/X11/lib -lX11 -lpthread -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -lclang_rt.osx -ldl " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-llapack -lblas -L/opt/X11/lib -lX11 -lpthread -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -lclang_rt.osx -ldl " Defined make macro "PETSC_CC_INCLUDES" to "-I/Users/barrysmith/Src/PETSc/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/opt/X11/include" Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "PETSC_FC_INCLUDES" to "-I/Users/barrysmith/Src/PETSc/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/opt/X11/include" Defined make macro "DESTDIR" to "/Users/barrysmith/Src/PETSc/arch-clang" Defined "LIB_DIR" to ""/Users/barrysmith/Src/PETSc/arch-clang/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "CC=clang CXX=clang++ FC=gfortran --download-mpich=1" Pushing language C Popping language C Pushing language FC Popping language FC Pushing language C Popping language C Pushing language FC Popping language FC sh: ['/usr/bin/cmake', '--version'] Executing: ['/usr/bin/cmake', '--version'] sh: cmake version 2.8.10.1 Pushing language C Popping language C Pushing language FC Popping language FC Pushing language Cxx Popping language Cxx Contents of initial cache file /Users/barrysmith/Src/PETSc/arch-clang/initial_cache_file.cmake : SET (CMAKE_C_COMPILER /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_C_FLAGS " -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 " CACHE STRING "Dummy comment" FORCE) SET (PETSC_CUDA_HOST_FLAGS ,-fPIC,-Wall,-Wwrite-strings,-Wno-strict-aliasing,-Wno-unknown-pragmas,-g3,-fno-inline,-O0 CACHE STRING "Dummy comment" FORCE) SET (CMAKE_Fortran_COMPILER /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_Fortran_FLAGS " -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_CXX_COMPILER /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_CXX_FLAGS " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_AR /usr/bin/ar CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_RANLIB /usr/bin/ranlib CACHE FILEPATH "Dummy comment" FORCE) Removing: /Users/barrysmith/Src/PETSc/arch-clang/CMakeCache.txt Removing: /Users/barrysmith/Src/PETSc/arch-clang/CMakeFiles/2.8.10.1 Invoking: ['/usr/bin/cmake', '--trace', '--debug-output', '-C/Users/barrysmith/Src/PETSc/arch-clang/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-clang', '/Users/barrysmith/Src/PETSc'] sh: ['/usr/bin/cmake', '--trace', '--debug-output', '-C/Users/barrysmith/Src/PETSc/arch-clang/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-clang', '/Users/barrysmith/Src/PETSc'] Executing: ['/usr/bin/cmake', '--trace', '--debug-output', '-C/Users/barrysmith/Src/PETSc/arch-clang/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-clang', '/Users/barrysmith/Src/PETSc'] sh: Running with trace output on. Running with debug output on. -- The C compiler identification is Clang 5.0.0 Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeDetermineCCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Check for working C compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Check for working C compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -- works Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Detecting C compiler ABI info Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Detecting C compiler ABI info - done Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- The Fortran compiler identification is GNU Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeDetermineFortranCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Check for working Fortran compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Check for working Fortran compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -- works Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Detecting Fortran compiler ABI info Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Detecting Fortran compiler ABI info - done Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Checking whether /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 supports Fortran 90 Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Checking whether /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 supports Fortran 90 -- yes Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- The CXX compiler identification is Clang 5.0.0 Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeDetermineCXXCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Check for working CXX compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Check for working CXX compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -- works Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Detecting CXX compiler ABI info Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Detecting CXX compiler ABI info - done Called from: [2] /Applications/CMake 2.8-10.app/Contents/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /Users/barrysmith/Src/PETSc/CMakeLists.txt -- Configuring done -- Generating /Users/barrysmith/Src/PETSc/arch-clang -- Generating done -- Build files have been written to: /Users/barrysmith/Src/PETSc/arch-clang CMake configured successfully, using as default build Defined make macro "PETSC_BUILD_USING_CMAKE" to "1" Pushing language C Popping language C Pushing language FC Popping language FC ================================================================================ ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.petsc4py(/Users/barrysmith/Src/PETSc/config/PETSc/packages/petsc4py.py:65) TESTING: alternateConfigureLibrary from PETSc.packages.petsc4py(config/PETSc/packages/petsc4py.py:65) Defined make rule "petsc4py" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpi4py(/Users/barrysmith/Src/PETSc/config/PETSc/packages/mpi4py.py:49) TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(config/PETSc/packages/mpi4py.py:49) Defined make rule "mpi4py" with dependencies "" and code [] Defined make rule "mpi4py_noinstall" with dependencies "" and code [] **** arch-clang/conf/petscvariables **** MPICXX_SHOW = clang++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread C_DEPFLAGS = -MMD -MP MPICC_SHOW = clang -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpmpich -lmpich -lopa -lmpl -lpthread AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP FC_DEPFLAGS = -MMD -MP MPIFC_SHOW = gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g -Wl,-flat_namespace -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lmpichf90 -lpmpich -lmpich -lopa -lmpl -lpthread FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc PETSC_BUILD_USING_CMAKE = 1 CC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 SOWING_LIB = PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc FC_FLAGS = -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g BLASLAPACK_LIB = -llapack -lblas PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} VALGRIND_INCLUDE = MPI_LIB = PETSC_EXTERNAL_LIB_BASIC = -llapack -lblas -L/opt/X11/lib -lX11 -lpthread -L/Users/barrysmith/Src/PETSc/arch-clang/lib -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -lclang_rt.osx -ldl SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SHLIBS = libpetsc CONFIGURE_OPTIONS = CC=clang CXX=clang++ FC=gfortran --download-mpich=1 PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PTHREAD_LIB = -lpthread PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/Users/barrysmith/Src/PETSc/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/opt/X11/include CPP_FLAGS = PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = FC_LINKER = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_LINKER = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc PCC_LINKER_FLAGS = -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/Users/barrysmith/Src/PETSc/include -I/Users/barrysmith/Src/PETSc/arch-clang/include -I/opt/X11/include PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 VALGRIND_LIB = PTHREAD_INCLUDE = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DARWIN_COMMONS_USE_DYLIBS = -Wl,-commons,use_dylibs BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = dylib PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /Users/barrysmith/Src/PETSc/arch-clang FC_MODULE_FLAG = -I X_LIB = -L/opt/X11/lib -lX11 X_INCLUDE = -I/opt/X11/include PETSC_WITH_EXTERNAL_LIB = -L/Users/barrysmith/Src/PETSc/arch-clang/lib -lpetsc -llapack -lblas -L/opt/X11/lib -lX11 -lpthread -L/usr/lib/clang/5.0/lib/darwin -lmpichf90 -lgfortran -L/usr/local/lib/gcc/x86_64-apple-darwin12.3.0/4.8.1 -L/usr/local/lib -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -lclang_rt.osx -lmpichcxx -lstdc++ -L/usr/bin/../lib/clang/5.0/lib/darwin -lclang_rt.osx -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -lclang_rt.osx -ldl SOWING_INCLUDE = MPI_INCLUDE = -I/Users/barrysmith/Src/PETSc/arch-clang/include FC_SUFFIX = o PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SLFLAG = -L CC = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc RANLIB = /usr/bin/ranlib -c DYNAMICLINKER = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc CXX = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx FC = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 CXXCPP = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -E FC_LINKER_SLFLAG = -L CPP = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc AR = /usr/bin/ar DIR = /Users/barrysmith/Src/PETSc SVN = svn GIT = git HG = hg CVS = cvs SHELL = /bin/sh GREP = /usr/bin/grep MV = /bin/mv PYTHON = /usr/bin/python MKDIR = /bin/mkdir -p SEDINPLACE = /usr/bin/sed -i "" SED = /usr/bin/sed DIFF = /usr/bin/diff -w GZIP = /usr/bin/gzip RM = /bin/rm -f CP = /bin/cp MAKE_IS_GNUMAKE = 1 MAKE = /opt/local/bin/gmake MAKE_NP = 7 OMAKE_NOPRINTDIR = /opt/local/bin/gmake --no-print-directory OMAKE = /opt/local/bin/gmake --print-directory MPIEXEC = /Users/barrysmith/Src/PETSc/arch-clang/bin/mpiexec GDB = /usr/bin/gdb DSYMUTIL = /usr/bin/dsymutil TEST_RUNS = C C_X Fortran X F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex BUILDSHAREDLIB = yes C2HTML = /usr/local/bin/c2html C2HTML = /usr/local/bin/c2html CMAKE = /usr/bin/cmake BIB2HTML = /usr/local/bin/bib2html PDFLATEX = /usr/local/texlive/2012/bin/x86_64-darwin/pdflatex DOCTEXT = /Users/barrysmith/Src/PETSc/arch-clang/bin/doctext MAPNAMES = /Users/barrysmith/Src/PETSc/arch-clang/bin/mapnames BIB2HTML = /Users/barrysmith/Src/PETSc/arch-clang/bin/bib2html BFORT = /Users/barrysmith/Src/PETSc/arch-clang/bin/bfort MAPNAMES = /usr/local/bin/mapnames **** arch-clang/conf/petscrules **** shared_install: -@echo "Now to check if the libraries are working do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" -@echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} .F.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $< .f.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $< shared_arch: shared_darwin mpi4py_noinstall: mpi4py: petsc4py: **** arch-clang/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_RTLD_DEFAULT #define PETSC_RTLD_DEFAULT 1 #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_PTHREAD #define PETSC_HAVE_PTHREAD 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) __attribute((deprecated)) #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_SO_REUSEADDR #define PETSC_HAVE_SO_REUSEADDR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_HAVE_X #define PETSC_HAVE_X 1 #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/Users/barrysmith/Src/PETSc/arch-clang/lib" #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_HAVE_SOWING #define PETSC_HAVE_SOWING 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "dylib" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __func__ #endif #ifndef PETSC_HAVE_ATOLL #define PETSC_HAVE_ATOLL 1 #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED __attribute((unused)) #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __func__ #endif #ifndef PETSC_HAVE_VALGRIND #define PETSC_HAVE_VALGRIND 1 #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_BUILTIN_EXPECT #define PETSC_HAVE_BUILTIN_EXPECT 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_MACHINE_ENDIAN_H #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_CXXABI_H #define PETSC_HAVE_CXXABI_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_MEMORY_H #define PETSC_HAVE_MEMORY_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBBLAS #define PETSC_HAVE_LIBBLAS 1 #endif #ifndef PETSC_HAVE_LIBZ #define PETSC_HAVE_LIBZ 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBGFORTRAN #define PETSC_HAVE_LIBGFORTRAN 1 #endif #ifndef PETSC_HAVE_LIBGCC_EXT_10_5 #define PETSC_HAVE_LIBGCC_EXT_10_5 1 #endif #ifndef PETSC_HAVE_LIBPTHREAD #define PETSC_HAVE_LIBPTHREAD 1 #endif #ifndef PETSC_HAVE_LIBLAPACK #define PETSC_HAVE_LIBLAPACK 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LIBMPICHF90 #define PETSC_HAVE_LIBMPICHF90 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBX11 #define PETSC_HAVE_LIBX11 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBQUADMATH #define PETSC_HAVE_LIBQUADMATH 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-clang" #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2013-10-09 08:02:25 -0500" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "76ef0031c4ffa7d564e9b92e452c4bfeaaf5f487" #endif #ifndef PETSC_DIR #define PETSC_DIR "/Users/barrysmith/Src/PETSc" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_SYSCTLBYNAME #define PETSC_HAVE_SYSCTLBYNAME 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK #define PETSC_HAVE_MPICH_CH3_SOCK 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_BLASLAPACK_UNDERSCORE #define PETSC_BLASLAPACK_UNDERSCORE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_USE_BYTES_FOR_SIZE #define PETSC_USE_BYTES_FOR_SIZE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** arch-clang/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- MPI: Install : Installed MPICH into /Users/barrysmith/Src/PETSc/arch-clang Sowing: Install : Installed Sowing into /Users/barrysmith/Src/PETSc/arch-clang PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-clang in conf/petscvariables File creation : Created arch-clang/conf/reconfigure-arch-clang.py for automatic reconfiguration Framework: File creation : Created makefile configure header arch-clang/conf/petscvariables File creation : Created makefile configure header arch-clang/conf/petscvariables File creation : Created configure header arch-clang/include/petscconf.h File creation : Created C specific configure header arch-clang/include/petscfix.h Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Compilers: C Compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 C++ Compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -fPIC Fortran Compiler: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpif90 -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -g Linkers: Shared linker: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 Dynamic linker: /Users/barrysmith/Src/PETSc/arch-clang/bin/mpicc -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 make: MPI: Includes: -I/Users/barrysmith/Src/PETSc/arch-clang/include BLAS/LAPACK: -llapack -lblas X: Includes: -I/opt/X11/include Library: -L/opt/X11/lib -lX11 cmake: Arch: pthread: Library: -lpthread sowing: valgrind: PETSc: PETSC_ARCH: arch-clang PETSC_DIR: /Users/barrysmith/Src/PETSc Clanguage: C Scalar type: real Precision: double Memory alignment: 16 shared libraries: enabled xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/Users/barrysmith/Src/PETSc PETSC_ARCH=arch-clang all or (experimental with python): PETSC_DIR=/Users/barrysmith/Src/PETSc PETSC_ARCH=arch-clang ./config/builder.py xxx=========================================================================xxx