Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Sat Sep 21 18:48:19 2013 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions CXX=g++ CC=gcc FC=gfortran --download-parmetis=1 --download-metis=1 --download-hdf5=1 --download-hypre=1 --download-ml=1 --download-triangle=1 --with-x=0 --with-debugging=0 --download-mpich=1 PETSC_ARCH=arch-macosx-gnu-O Working directory: /Users/markadams/Codes/petsc Machine platform: ('Darwin', 'localhost', '12.4.0', 'Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.5 (default, Aug 1 2013, 01:01:17) [GCC 4.2.1 Compatible Apple Clang 4.1 ((tags/Apple/clang-421.11.66))] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/Users/markadams/Codes/petsc/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/local/bin/gdb...found Defined make macro "GDB" to "/opt/local/bin/gdb" Checking for program /opt/local/bin/dbx...not found Checking for program /opt/local/sbin/dbx...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/dbx...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/dbx...not found Checking for program /Users/markadams/Codes/git-fat/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /opt/X11/bin/dbx...not found Checking for program /opt/X11/bin/dbx...not found Checking for program /Users/markadams/dbx...not found Checking for program /opt/local/bin/xdb...not found Checking for program /opt/local/sbin/xdb...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/xdb...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/xdb...not found Checking for program /Users/markadams/Codes/git-fat/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /opt/X11/bin/xdb...not found Checking for program /opt/X11/bin/xdb...not found Checking for program /Users/markadams/xdb...not found Checking for program /opt/local/bin/dsymutil...not found Checking for program /opt/local/sbin/dsymutil...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/dsymutil...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/dsymutil...not found Checking for program /Users/markadams/Codes/git-fat/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/Users/markadams/Codes/petsc/config/PETSc/utilities/languages.py:28) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/Users/markadams/Codes/petsc/config/PETSc/utilities/languages.py:37) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:37) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMkdir from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/local/bin/mkdir...not found Checking for program /opt/local/sbin/mkdir...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/mkdir...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/mkdir...not found Checking for program /Users/markadams/Codes/git-fat/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /opt/local/bin/autoreconf...found All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs sh: cd /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/autoconfdir&&/opt/local/bin/autoreconf Executing: cd /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/autoconfdir&&/opt/local/bin/autoreconf sh: ================================================================================ TEST configurePrograms from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:65) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:65) Check for the programs needed to build and run PETSc Checking for program /opt/local/bin/sh...not found Checking for program /opt/local/sbin/sh...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/sh...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/sh...not found Checking for program /Users/markadams/Codes/git-fat/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/local/bin/sed...not found Checking for program /opt/local/sbin/sed...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/sed...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/sed...not found Checking for program /Users/markadams/Codes/git-fat/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" sh: /usr/bin/sed -i s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/sed1" Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/sed1" sh: Rejected SEDINPLACE cmd: /usr/bin/sed -i sh: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/sed1" Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/sed1" sh: Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /opt/local/bin/mv...not found Checking for program /opt/local/sbin/mv...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/mv...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/mv...not found Checking for program /Users/markadams/Codes/git-fat/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/local/bin/cp...not found Checking for program /opt/local/sbin/cp...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/cp...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/cp...not found Checking for program /Users/markadams/Codes/git-fat/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/local/bin/grep...not found Checking for program /opt/local/sbin/grep...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/grep...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/grep...not found Checking for program /Users/markadams/Codes/git-fat/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /opt/local/bin/rm...not found Checking for program /opt/local/sbin/rm...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/rm...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/rm...not found Checking for program /Users/markadams/Codes/git-fat/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/local/bin/diff...not found Checking for program /opt/local/sbin/diff...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/diff...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/diff...not found Checking for program /Users/markadams/Codes/git-fat/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/diff1" "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/diff2" Executing: "/usr/bin/diff" -w "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/diff1" "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/markadams/ps...not found Checking for program /opt/local/bin/gzip...found Defined make macro "GZIP" to "/opt/local/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" ================================================================================ TEST configureGit from config.sourceControl(/Users/markadams/Codes/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /opt/local/bin/git...found Defined make macro "GIT" to "git" sh: git --version Executing: git --version sh: git version 1.8.4 ================================================================================ TEST configureMercurial from config.sourceControl(/Users/markadams/Codes/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /opt/local/bin/hg...found Defined make macro "HG" to "hg" sh: hg version -q Executing: hg version -q sh: Mercurial Distributed SCM (version 2.7) ================================================================================ TEST configureCVS from config.sourceControl(/Users/markadams/Codes/petsc/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /opt/local/bin/cvs...not found Checking for program /opt/local/sbin/cvs...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/cvs...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/cvs...not found Checking for program /Users/markadams/Codes/git-fat/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" sh: cvs --version Executing: cvs --version sh: Concurrent Versions System (CVS) 1.12.13 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/Users/markadams/Codes/petsc/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /opt/local/bin/svn...found Defined make macro "SVN" to "svn" sh: svn --version -q Executing: svn --version -q sh: 1.8.3 ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/Users/markadams/Codes/petsc/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/Users/markadams/Codes/petsc" Defined "DIR" to ""/Users/markadams/Codes/petsc"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/Users/markadams/Codes/petsc/config/PETSc/utilities/petscdir.py:77) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:77) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/Users/markadams/Codes/petsc/config/PETSc/utilities/petscdir.py:84) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:84) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""2492010b6ebf10eed9da155c21c4e5e815469b33"" Defined "VERSION_DATE_GIT" to ""2013-09-20 15:48:09 -0500"" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/Users/markadams/Codes/petsc/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/Users/markadams/Codes/petsc/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST printEnvVariables from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1504) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1504) **** printenv **** CHOMBO_DIR=/Users/markadams/Codes/Chombo XTERM_SHELL=/bin/bash CH_TIMER=FALSE MPICC=/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/mpicc LOGNAME=markadams USER=markadams HOME=/Users/markadams PATH=/opt/local/bin:/opt/local/sbin:/Applications/kdiff3.app/Contents/MacOS:/Applications/CMake2.8-6.app/Contents/bin:/Users/markadams/Codes/git-fat:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/opt/X11/bin DISPLAY=/tmp/launch-A6ZY6x/org.macosforge.xquartz:0 TERM=xterm SHELL=/bin/bash SHLVL=2 SECURITYSESSIONID=186a6 PWD=/Users/markadams/Codes/petsc CH_OUTPUT_INTERVAL=1000 WINDOWID=12582925 PETSC_DIR=/Users/markadams/Codes/petsc _=./arch-macosx-gnu-O.py MPICXX=/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/mpicxx SVN_EDITOR=vi NETCDF_DIR=/Users/markadams/SFE/NETCDF_INSTALL XTERM_VERSION=XTerm(281) SSH_AUTH_SOCK=/tmp/launch-A6XcFM/Listeners DATAFILESPATH=/Users/markadams/matrices XP_LICENSE_INTERFACE=en0 PSORT_DIR=/Users/markadams/Codes/psorting Apple_PubSub_Socket_Render=/tmp/launch-pYVPnb/Render XTERM_LOCALE=C TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ MACHINE=darwin OLYMPUS_BUILD_DIR=/Users/markadams/Codes/Olympus OLDPWD=/Users/markadams CH_TIMER_SAMPLE=60000 __CF_USER_TEXT_ENCODING=0x1F5:0:0 Apple_Ubiquity_Message=/tmp/launch-SYY75G/Apple_Ubiquity_Message PETSC_ARCH=arch-macosx-gnu-O CVS_RSH=ssh SLEPC_DIR=/Users/markadams/Codes/slepc-dev CHARMPP_DIR=/Users/markadams/Codes/Charm++/mpi-darwin-x86_64 X11_PREFS_DOMAIN=org.macosforge.xquartz.X11 COMMAND_MODE=unix2003 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1511) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1511) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1476) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1476) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1495) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1495) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:399) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:399) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:409) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:409) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:525) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:525) Locate a functional C compiler Checking for program /opt/local/bin/gcc...not found Checking for program /opt/local/sbin/gcc...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/gcc...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/gcc...not found Checking for program /Users/markadams/Codes/git-fat/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:560) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:560) Locate a functional C preprocessor Checking for program /opt/local/bin/gcc...not found Checking for program /opt/local/sbin/gcc...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/gcc...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/gcc...not found Checking for program /Users/markadams/Codes/git-fat/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 157 "/usr/include/sys/signal.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((visibility("default"))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((visibility("default"))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 254 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 35 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; typedef __darwin_wchar_t wchar_t; typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 144 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * , const char * , size_t); int mbtowc(wchar_t * , const char * , size_t); int posix_memalign(void **, size_t, size_t) __attribute__((visibility("default"))); void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ); size_t wcstombs(char * , const wchar_t * , size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *, int *); double erand48(unsigned short[3]); char *fcvt(double, int, int *, int *); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * , char * ) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 256 "/usr/include/stdlib.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) __attribute__((visibility("default"))); void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) __attribute__((visibility("default"))); int atexit_b(void (^)(void)) __attribute__((visibility("default"))); void *bsearch_b(const void *, const void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated,visibility("default"))); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int heapsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) __attribute__((visibility("default"))); void psort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) __attribute__((visibility("default"))); void qsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c" 2 Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:594) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:594) Locate a functional CUDA compiler Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/nvcc...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/nvcc...not found Checking for program /Users/markadams/Codes/git-fat/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /Users/markadams/nvcc...not found Checking for program /Users/markadams/Codes/petsc/bin/win32fe/nvcc...not found Checking for program /opt/local/bin/nvcc...not found Checking for program /opt/local/sbin/nvcc...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/nvcc...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/nvcc...not found Checking for program /Users/markadams/Codes/git-fat/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /Users/markadams/nvcc...not found Checking for program /Users/markadams/Codes/petsc/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:632) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:632) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional Cxx compiler Checking for program /opt/local/bin/g++...not found Checking for program /opt/local/sbin/g++...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/g++...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/g++...not found Checking for program /Users/markadams/Codes/git-fat/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:773) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:773) Locate a functional Cxx preprocessor Checking for program /opt/local/bin/g++...not found Checking for program /opt/local/sbin/g++...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/g++...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/g++...not found Checking for program /Users/markadams/Codes/git-fat/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx sh: g++ -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.2.1/cstdlib" 1 3 # 48 "/usr/include/c++/4.2.1/cstdlib" 3 # 49 "/usr/include/c++/4.2.1/cstdlib" 3 # 1 "/usr/include/c++/4.2.1/bits/c++config.h" 1 3 # 41 "/usr/include/c++/4.2.1/bits/c++config.h" 3 # 1 "/usr/include/c++/4.2.1/bits/os_defines.h" 1 3 # 61 "/usr/include/c++/4.2.1/bits/os_defines.h" 3 # 1 "/usr/include/unistd.h" 1 3 4 # 71 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 72 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 138 "/usr/include/sys/unistd.h" 3 4 struct accessx_descriptor { unsigned int ad_name_offset; int ad_flags; int ad_pad[2]; }; # 73 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 74 "/usr/include/unistd.h" 2 3 4 typedef __darwin_gid_t gid_t; typedef __darwin_intptr_t intptr_t; typedef __darwin_off_t off_t; typedef __darwin_pid_t pid_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_uid_t uid_t; typedef __darwin_useconds_t useconds_t; # 458 "/usr/include/unistd.h" 3 4 extern "C" { void _exit(int) __attribute__((noreturn)); int access(const char *, int); unsigned int alarm(unsigned int); int chdir(const char *); int chown(const char *, uid_t, gid_t); int close(int) __asm("_" "close" ); int dup(int); int dup2(int, int); int execl(const char *, const char *, ...); int execle(const char *, const char *, ...); int execlp(const char *, const char *, ...); int execv(const char *, char * const *); int execve(const char *, char * const *, char * const *); int execvp(const char *, char * const *); pid_t fork(void); long fpathconf(int, int); char *getcwd(char *, size_t); gid_t getegid(void); uid_t geteuid(void); gid_t getgid(void); int getgroups(int, gid_t []); char *getlogin(void); pid_t getpgrp(void); pid_t getpid(void); pid_t getppid(void); uid_t getuid(void); int isatty(int); int link(const char *, const char *); off_t lseek(int, off_t, int); long pathconf(const char *, int); int pause(void) __asm("_" "pause" ); int pipe(int [2]); ssize_t read(int, void *, size_t) __asm("_" "read" ); int rmdir(const char *); int setgid(gid_t); int setpgid(pid_t, pid_t); pid_t setsid(void); int setuid(uid_t); unsigned int sleep(unsigned int) __asm("_" "sleep" ); long sysconf(int); pid_t tcgetpgrp(int); int tcsetpgrp(int, pid_t); char *ttyname(int); int ttyname_r(int, char *, size_t) __asm("_" "ttyname_r" ); int unlink(const char *); ssize_t write(int, const void *, size_t) __asm("_" "write" ); } # 535 "/usr/include/unistd.h" 3 4 extern "C" { size_t confstr(int, char *, size_t) __asm("_" "confstr" ); int getopt(int, char * const [], const char *) __asm("_" "getopt" ); extern char *optarg; extern int optind, opterr, optopt; } # 560 "/usr/include/unistd.h" 3 4 extern "C" { void *brk(const void *); int chroot(const char *) ; char *crypt(const char *, const char *); char *ctermid(char *); void encrypt(char *, int) __asm("_" "encrypt" ); int fchdir(int); long gethostid(void); pid_t getpgid(pid_t); pid_t getsid(pid_t); int getdtablesize(void) ; int getpagesize(void) __attribute__((const)) ; char *getpass(const char *) ; char *getwd(char *) ; int lchown(const char *, uid_t, gid_t) __asm("_" "lchown" ); int lockf(int, int, off_t) __asm("_" "lockf" ); int nice(int) __asm("_" "nice" ); ssize_t pread(int, void *, size_t, off_t) __asm("_" "pread" ); ssize_t pwrite(int, const void *, size_t, off_t) __asm("_" "pwrite" ); void *sbrk(int); pid_t setpgrp(void) __asm("_" "setpgrp" ); int setregid(gid_t, gid_t) __asm("_" "setregid" ); int setreuid(uid_t, uid_t) __asm("_" "setreuid" ); void swab(const void * , void * , ssize_t); void sync(void); int truncate(const char *, off_t); useconds_t ualarm(useconds_t, useconds_t); int usleep(useconds_t) __asm("_" "usleep" ); pid_t vfork(void); int fsync(int) __asm("_" "fsync" ); int ftruncate(int, off_t); int getlogin_r(char *, size_t); } # 647 "/usr/include/unistd.h" 3 4 extern "C" { int fchown(int, uid_t, gid_t); int gethostname(char *, size_t); ssize_t readlink(const char * , char * , size_t); int setegid(gid_t); int seteuid(uid_t); int symlink(const char *, const char *); } # 1 "/usr/include/sys/select.h" 1 3 4 # 66 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/sys/select.h" 2 3 4 # 78 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 183 "/usr/include/sys/_structs.h" 3 4 extern "C" { typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; } static inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/select.h" 2 3 4 # 87 "/usr/include/sys/select.h" 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; typedef __darwin_sigset_t sigset_t; # 134 "/usr/include/sys/select.h" 3 4 extern "C" { int pselect(int, fd_set * , fd_set * , fd_set * , const struct timespec * , const sigset_t * ) __asm("_" "pselect" "$1050") ; # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * , fd_set * , fd_set * , struct timeval * ) __asm("_" "select" "$1050") ; # 153 "/usr/include/sys/select.h" 2 3 4 } # 663 "/usr/include/unistd.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; typedef __darwin_uuid_t uuid_t; extern "C" { void _Exit(int) __attribute__((noreturn)); int accessx_np(const struct accessx_descriptor *, size_t, int *, uid_t); int acct(const char *); int add_profil(char *, size_t, unsigned long, unsigned int); void endusershell(void); int execvP(const char *, const char *, char * const *); char *fflagstostr(unsigned long); int getdomainname(char *, int); int getgrouplist(const char *, int, int *, int *); int gethostuuid(uuid_t, const struct timespec *) __attribute__((visibility("default"))); mode_t getmode(const void *, mode_t); int getpeereid(int, uid_t *, gid_t *); int getsgroups_np(int *, uuid_t); char *getusershell(void); int getwgroups_np(int *, uuid_t); int initgroups(const char *, int); int iruserok(unsigned long, int, const char *, const char *); int iruserok_sa(const void *, int, int, const char *, const char *); int issetugid(void); char *mkdtemp(char *); int mknod(const char *, mode_t, dev_t); int mkpath_np(const char *path, mode_t omode) __attribute__((visibility("default"))); int mkstemp(char *); int mkstemps(char *, int); char *mktemp(char *); int nfssvc(int, void *); int profil(char *, size_t, unsigned long, unsigned int); int pthread_setugid_np(uid_t, gid_t); int pthread_getugid_np( uid_t *, gid_t *); int rcmd(char **, int, const char *, const char *, const char *, int *); int rcmd_af(char **, int, const char *, const char *, const char *, int *, int); int reboot(int); int revoke(const char *); int rresvport(int *); int rresvport_af(int *, int); int ruserok(const char *, int, const char *, const char *); int setdomainname(const char *, int); int setgroups(int, const gid_t *); void sethostid(long); int sethostname(const char *, int); void setkey(const char *) __asm("_" "setkey" ); int setlogin(const char *); void *setmode(const char *) __asm("_" "setmode" ); int setrgid(gid_t); int setruid(uid_t); int setsgroups_np(int, const uuid_t); void setusershell(void); int setwgroups_np(int, const uuid_t); int strtofflags(char **, unsigned long *, unsigned long *); int swapon(const char *); int syscall(int, ...); int ttyslot(void); int undelete(const char *); int unwhiteout(const char *); void *valloc(size_t); extern char *suboptarg; int getsubopt(char **, char * const *, char **); int fgetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((visibility("default"))); int fsetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((visibility("default"))); int getattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "getattrlist" ); int setattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "setattrlist" ); int exchangedata(const char*,const char*,unsigned int); int getdirentriesattr(int,void*,void*,size_t,unsigned int*,unsigned int*,unsigned int*,unsigned int); # 763 "/usr/include/unistd.h" 3 4 struct fssearchblock; struct searchstate; int searchfs(const char *, struct fssearchblock *, unsigned long *, unsigned int, unsigned int, struct searchstate *); int fsctl(const char *,unsigned long,void*,unsigned int); int ffsctl(int,unsigned long,void*,unsigned int) __attribute__((visibility("default"))); int fsync_volume_np(int, int) __attribute__((visibility("default"))); int sync_volume_np(const char *, int) __attribute__((visibility("default"))); extern int optreset; } # 62 "/usr/include/c++/4.2.1/bits/os_defines.h" 2 3 extern "C" { # 92 "/usr/include/c++/4.2.1/bits/os_defines.h" 3 extern void __dtrace_probe$cxa_runtime$cxa_exception_rethrow$v1(void); extern int __dtrace_isenabled$cxa_runtime$cxa_exception_rethrow$v1(void); extern void __dtrace_probe$cxa_runtime$cxa_exception_throw$v1$766f6964202a(void *); extern int __dtrace_isenabled$cxa_runtime$cxa_exception_throw$v1(void); } # 42 "/usr/include/c++/4.2.1/bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.2.1/bits/cpu_defines.h" 1 3 # 45 "/usr/include/c++/4.2.1/bits/c++config.h" 2 3 # 153 "/usr/include/c++/4.2.1/bits/c++config.h" 3 namespace std { # 165 "/usr/include/c++/4.2.1/bits/c++config.h" 3 } # 51 "/usr/include/c++/4.2.1/cstdlib" 2 3 # 1 "/usr/include/c++/4.2.1/cstddef" 1 3 # 48 "/usr/include/c++/4.2.1/cstddef" 3 # 49 "/usr/include/c++/4.2.1/cstddef" 3 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/stddef.h" 1 3 4 # 152 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 52 "/usr/include/c++/4.2.1/cstddef" 2 3 namespace std { using ::ptrdiff_t; using ::size_t; } # 52 "/usr/include/c++/4.2.1/cstdlib" 2 3 # 72 "/usr/include/c++/4.2.1/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 65 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 95 "/usr/include/sys/wait.h" 3 4 typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 157 "/usr/include/sys/signal.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 175 "/usr/include/sys/signal.h" 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 extern "C" { void (*signal(int, void (*)(int)))(int); } # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 extern "C" { int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((visibility("default"))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((visibility("default"))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); } # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 254 "/usr/include/sys/wait.h" 3 4 extern "C" { pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); } # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 35 "/usr/include/alloca.h" 3 4 extern "C" { void *alloca(size_t); } # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; # 97 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 144 "/usr/include/stdlib.h" 3 4 extern "C" { void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:882) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:882) Locate a functional Fortran compiler Checking for program /opt/local/bin/gfortran...found Defined make macro "FC" to "gfortran" Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:901) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:901) Make sure fortran comment "!" works Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:964) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:964) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C sh: gcc --help Executing: gcc --help sh: Usage: i686-apple-darwin11-llvm-gcc-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-gcc-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx sh: g++ --help Executing: g++ --help sh: Usage: i686-apple-darwin11-llvm-g++-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-g++-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: ar -V Executing: ar -V sh: sh: ar -V Executing: ar -V sh: Defined make macro "FAST_AR_FLAGS" to "Scq" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /opt/local/bin/ar...not found Checking for program /opt/local/sbin/ar...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/ar...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/ar...not found Checking for program /Users/markadams/Codes/git-fat/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/local/bin/ranlib...not found Checking for program /opt/local/sbin/ranlib...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/ranlib...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/ranlib...not found Checking for program /Users/markadams/Codes/git-fat/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconf1.a /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conf1.o Executing: /usr/bin/ar cr /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconf1.a /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conf1.o sh: sh: /usr/bin/ranlib -c /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconf1.a Executing: /usr/bin/ranlib -c /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconf1.a sh: sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -lconf1 Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1212) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1212) Check that the linker can produce shared libraries sh: uname -s Executing: uname -s sh: Darwin Checking shared linker gcc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /opt/local/bin/gcc...not found Checking for program /opt/local/sbin/gcc...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/gcc...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/gcc...not found Checking for program /Users/markadams/Codes/git-fat/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -dynamiclib -single_module sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -undefined dynamic_lookup sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -multiply_defined suppress sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -lconftest Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -lconftest sh: Using shared linker gcc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib sh: uname -s Executing: uname -s sh: Darwin ================================================================================ TEST checkLinkerMac from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1270) TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1270) Tests some Apple Mac specific linker flags Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-multiply_defined,suppress sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-multiply_defined -Wl,suppress sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-commons,use_dylibs sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-search_paths_first Popping language C Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-multiply_defined,suppress sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-commons,use_dylibs sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-search_paths_first Popping language Cxx Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-multiply_defined,suppress sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-multiply_defined -Wl,suppress sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-commons,use_dylibs sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-search_paths_first Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1290) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1290) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: uname -s Executing: uname -s sh: Darwin sh: gcc -V Executing: gcc -V sh: Popping language C Pushing language Cxx sh: uname -s Executing: uname -s sh: Darwin sh: gcc -V Executing: gcc -V sh: Popping language Cxx Pushing language FC sh: uname -s Executing: uname -s sh: Darwin sh: gcc -V Executing: gcc -V sh: Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1325) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1325) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1374) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1374) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 37 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 38 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/stdbool.h" 1 3 4 # 41 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/AvailabilityMacros.h" 1 3 4 # 42 "/usr/include/dlfcn.h" 2 3 4 typedef struct dl_info { const char *dli_fname; void *dli_fbase; const char *dli_sname; void *dli_saddr; } Dl_info; extern int dladdr(const void *, Dl_info *); extern int dlclose(void * __handle); extern char * dlerror(void); extern void * dlopen(const char * __path, int __mode); extern void * dlsym(void * __handle, const char * __symbol); extern _Bool dlopen_preflight(const char* __path) ; # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for function dlopen in library ['dl'] [] Pushing language C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlsym in library ['dl'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlsym(); int main() { dlsym() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlclose in library ['dl'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlclose(); int main() { dlclose() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Darwin Checking dynamic linker gcc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /opt/local/bin/gcc...not found Checking for program /opt/local/sbin/gcc...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/gcc...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/gcc...not found Checking for program /Users/markadams/Codes/git-fat/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -dynamiclib -single_module sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -undefined dynamic_lookup sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl sh: Valid C linker flag -multiply_defined suppress sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl sh: sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c:11: warning: incompatible implicit declaration of built-in function 'printf' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c:15: warning: incompatible implicit declaration of built-in function 'printf' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c:19: warning: incompatible implicit declaration of built-in function 'printf' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -ldl sh: Using dynamic linker gcc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib ================================================================================ TEST output from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1420) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1420) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-L" Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-L" Substituting "CXXCPP" with "g++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-L" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C sh: gcc --version Executing: gcc --version sh: i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gcc i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) sh: gcc --help Executing: gcc --help sh: Usage: i686-apple-darwin11-llvm-gcc-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-gcc-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas sh: gcc --help Executing: gcc --help sh: Usage: i686-apple-darwin11-llvm-gcc-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-gcc-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -O sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Popping language C Pushing language Cxx sh: g++ --version Executing: g++ --version sh: i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) sh: g++ --help Executing: g++ --help sh: Usage: i686-apple-darwin11-llvm-g++-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-g++-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas sh: g++ --help Executing: g++ --help sh: Usage: i686-apple-darwin11-llvm-g++-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-g++-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -O sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Popping language Cxx Pushing language FC sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.7.1 Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: gfortran GNU Fortran (GCC) 4.7.1 sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.7.1 Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.7.1 Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Trying FC compiler flag -Wall sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Trying FC compiler flag -Wno-unused-dummy-argument sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument sh: gfortran --help Executing: gfortran --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -O sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -O Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/Users/markadams/Codes/petsc/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/Users/markadams/Codes/petsc/config/PETSc/utilities/arch.py:32) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:32) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-macosx-gnu-O"" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/utilities/sharedLibraries.py:42) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:42) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/utilities/sharedLibraries.py:63) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:63) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/utilities/sharedLibraries.py:102) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:102) Checks whether dynamic loading should be used, for which you must - Specify --with-dynamic-loading - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Defined "HAVE_DYNAMIC_LIBRARIES" to "1" Dynamic loading - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/Users/markadams/Codes/petsc/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(config/PETSc/utilities/bmakeDir.py:26) Makes $PETSC_ARCH and subdirectories if it does not exist Changed persistence directory to arch-macosx-gnu-O/conf sh: gcc --help Executing: gcc --help sh: Usage: i686-apple-darwin11-llvm-gcc-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-gcc-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c:5: error: nested functions are disabled, use -fnested-functions to re-enable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c:5: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'x' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c:5: error: 'x' undeclared (first use in this function) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c:5: error: (Each undeclared identifier is reported only once /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c:5: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c:5: warning: unused variable 'x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c:6: warning: unused variable 'i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_LAZY" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_NOW" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_LOCAL" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl sh: Possible ERROR while running linker: Using built-in specs. Target: i686-apple-darwin11 Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure --disable-checking --enable-werror --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin11 --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11 --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1 Thread model: posix gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/../../.. -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl -lSystem -lgcc -lSystem output: error message = {Using built-in specs. Target: i686-apple-darwin11 Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure --disable-checking --enable-werror --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin11 --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11 --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1 Thread model: posix gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/../../.. -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl -lSystem -lgcc -lSystem } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg i686-apple-darwin11 compilers: Unknown arg i686-apple-darwin11 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure compilers: Unknown arg /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure compilers: Checking arg --disable-checking compilers: Unknown arg --disable-checking compilers: Checking arg --enable-werror compilers: Unknown arg --enable-werror compilers: Checking arg --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 compilers: Unknown arg --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 compilers: Checking arg --mandir=/share/man compilers: Unknown arg --mandir=/share/man compilers: Checking arg --enable-languages=c,objc,c++,obj-c++ compilers: Unknown arg --enable-languages=c,objc,c++,obj-c++ compilers: Checking arg --program-prefix=llvm- compilers: Unknown arg --program-prefix=llvm- compilers: Checking arg --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ compilers: Unknown arg --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ compilers: Checking arg --with-slibdir=/usr/lib compilers: Unknown arg --with-slibdir=/usr/lib compilers: Checking arg --build=i686-apple-darwin11 compilers: Unknown arg --build=i686-apple-darwin11 compilers: Checking arg --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local compilers: Unknown arg --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local compilers: Checking arg --program-prefix=i686-apple-darwin11- compilers: Unknown arg --program-prefix=i686-apple-darwin11- compilers: Checking arg --host=x86_64-apple-darwin11 compilers: Unknown arg --host=x86_64-apple-darwin11 compilers: Checking arg --target=i686-apple-darwin11 compilers: Unknown arg --target=i686-apple-darwin11 compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.2.1 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.2.1 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.2.1 compilers: Unknown arg 4.2.1 compilers: Checking arg (Based compilers: Unknown arg (Based compilers: Checking arg on compilers: Unknown arg on compilers: Checking arg Apple compilers: Unknown arg Apple compilers: Checking arg Inc. compilers: Unknown arg Inc. compilers: Checking arg build compilers: Unknown arg build compilers: Checking arg 5658) compilers: Unknown arg 5658) compilers: Checking arg (LLVM compilers: Unknown arg (LLVM compilers: Checking arg build compilers: Unknown arg build compilers: Checking arg 2336.11.00) compilers: Unknown arg 2336.11.00) compilers: Checking arg /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 compilers: Unknown arg /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.4 compilers: Unknown arg 10.8.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Checking arg -lcrt1.10.6.o compilers: Skipping system library: -lcrt1.10.6.o compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1 compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/../../.. compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/../../.. compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lSystem compilers: Found library : -lSystem compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lSystem compilers: Libraries needed to link C code with another linker: ['-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib/gcc', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib', '-ldl', '-lSystem'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Popping language FC sh: g++ --help Executing: g++ --help sh: Usage: i686-apple-darwin11-llvm-g++-4.2 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -combine Pass multiple source files to compiler at once -save-temps Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -b Run gcc for target , if installed -V Run gcc version number , if installed -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by i686-apple-darwin11-llvm-g++-4.2. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc: In function 'int main()': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc:5: error: expected initializer before 'x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc: In function 'int main()': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc:5: warning: unused variable 'x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc: In function 'int main()': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc:6: warning: unused variable 'i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Using built-in specs. Target: i686-apple-darwin11 Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure --disable-checking --enable-werror --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin11 --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11 --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1 Thread model: posix gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/../../.. -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl -lSystem -ldl -lstdc++ -lSystem -lgcc -lSystem output: error message = {Using built-in specs. Target: i686-apple-darwin11 Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure --disable-checking --enable-werror --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin11 --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11 --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1 Thread model: posix gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00) /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/../../.. -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -ldl -lSystem -ldl -lstdc++ -lSystem -lgcc -lSystem } Pushing language CXX Popping language CXX in g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg i686-apple-darwin11 compilers: Unknown arg i686-apple-darwin11 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure compilers: Unknown arg /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/src/configure compilers: Checking arg --disable-checking compilers: Unknown arg --disable-checking compilers: Checking arg --enable-werror compilers: Unknown arg --enable-werror compilers: Checking arg --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 compilers: Unknown arg --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 compilers: Checking arg --mandir=/share/man compilers: Unknown arg --mandir=/share/man compilers: Checking arg --enable-languages=c,objc,c++,obj-c++ compilers: Unknown arg --enable-languages=c,objc,c++,obj-c++ compilers: Checking arg --program-prefix=llvm- compilers: Unknown arg --program-prefix=llvm- compilers: Checking arg --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ compilers: Unknown arg --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ compilers: Checking arg --with-slibdir=/usr/lib compilers: Unknown arg --with-slibdir=/usr/lib compilers: Checking arg --build=i686-apple-darwin11 compilers: Unknown arg --build=i686-apple-darwin11 compilers: Checking arg --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local compilers: Unknown arg --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~28/dst-llvmCore/Developer/usr/local compilers: Checking arg --program-prefix=i686-apple-darwin11- compilers: Unknown arg --program-prefix=i686-apple-darwin11- compilers: Checking arg --host=x86_64-apple-darwin11 compilers: Unknown arg --host=x86_64-apple-darwin11 compilers: Checking arg --target=i686-apple-darwin11 compilers: Unknown arg --target=i686-apple-darwin11 compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.2.1 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.2.1 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.2.1 compilers: Unknown arg 4.2.1 compilers: Checking arg (Based compilers: Unknown arg (Based compilers: Checking arg on compilers: Unknown arg on compilers: Checking arg Apple compilers: Unknown arg Apple compilers: Checking arg Inc. compilers: Unknown arg Inc. compilers: Checking arg build compilers: Unknown arg build compilers: Checking arg 5658) compilers: Unknown arg 5658) compilers: Checking arg (LLVM compilers: Unknown arg (LLVM compilers: Checking arg build compilers: Unknown arg build compilers: Checking arg 2336.11.00) compilers: Unknown arg 2336.11.00) compilers: Checking arg /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 compilers: Unknown arg /usr/llvm-gcc-4.2/bin/../libexec/gcc/i686-apple-darwin11/4.2.1/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.4 compilers: Unknown arg 10.8.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Checking arg -lcrt1.10.6.o compilers: Skipping system library: -lcrt1.10.6.o compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/../../.. compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/../../.. compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lSystem compilers: Found library: -lSystem Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lSystem compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lSystem compilers: Libraries needed to link Cxx code with another linker: ['-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib/gcc', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lstdc++ -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confc.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confc.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confc.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confc.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _main in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _main in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status } Pushing language FC Popping language FC in gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confc.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: program main call d1_chk() end Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -DTesting /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -DTesting /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.F sh: Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: gfortran -V Executing: gfortran -V sh: sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Driving: gfortran -mmacosx-version-min=10.8.4 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/lto-wrapper Target: x86_64-apple-darwin11 Configured with: ../configure --prefix=/opt/local --build=x86_64-apple-darwin11 --enable-languages=fortran --libdir=/opt/local/lib/gfortran47 --libexecdir=/opt/local/libexec/gfortran47 --includedir=/opt/local/include/gfortran47 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gfortran-4.7 --with-local-prefix=/opt/local --with-system-zlib --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-ppl=/opt/local --with-libiconv-prefix=/opt/local STRIP=/opt/local/bin/strip STRIP_FOR_TARGET=/opt/local/bin/strip Thread model: posix gcc version 4.7.1 (GCC) Reading specs from /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.4' '-o' '/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-O' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib/gcc' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/ LIBRARY_PATH=/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.4' '-o' '/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-O' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib/gcc' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib' '-shared-libgcc' '-mtune=core2' /opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -lSystem -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v collect2 version 4.7.1 /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -lSystem -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-133.3 configured to support archs: armv6 armv7 i386 x86_64 Library search paths: /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 /usr/llvm-gcc-4.2/lib/gcc /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 /usr/llvm-gcc-4.2/lib /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 /opt/local/lib/gfortran47 /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ output: error message = {Driving: gfortran -mmacosx-version-min=10.8.4 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/lto-wrapper Target: x86_64-apple-darwin11 Configured with: ../configure --prefix=/opt/local --build=x86_64-apple-darwin11 --enable-languages=fortran --libdir=/opt/local/lib/gfortran47 --libexecdir=/opt/local/libexec/gfortran47 --includedir=/opt/local/include/gfortran47 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gfortran-4.7 --with-local-prefix=/opt/local --with-system-zlib --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-ppl=/opt/local --with-libiconv-prefix=/opt/local STRIP=/opt/local/bin/strip STRIP_FOR_TARGET=/opt/local/bin/strip Thread model: posix gcc version 4.7.1 (GCC) Reading specs from /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.4' '-o' '/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-O' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib/gcc' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/ LIBRARY_PATH=/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.4' '-o' '/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-Wno-unused-dummy-argument' '-O' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64' '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib/gcc' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1' '-L/usr/llvm-gcc-4.2/lib' '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib' '-shared-libgcc' '-mtune=core2' /opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -lSystem -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v collect2 version 4.7.1 /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.8.4 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -lcrt1.10.6.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -lSystem -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-133.3 configured to support archs: armv6 armv7 i386 x86_64 Library search paths: /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 /usr/llvm-gcc-4.2/lib/gcc /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 /usr/llvm-gcc-4.2/lib /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 /opt/local/lib/gfortran47 /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ } Pushing language FC Popping language FC in gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: program main end Popping language FC compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -mmacosx-version-min=10.8.4 compilers: Unknown arg -mmacosx-version-min=10.8.4 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib/gcc compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib compilers: Found library directory: -L/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Found library directory: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -lSystem compilers: Found library: -lSystem Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin11 compilers: Unknown arg x86_64-apple-darwin11 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --prefix=/opt/local compilers: Unknown arg --prefix=/opt/local compilers: Checking arg --build=x86_64-apple-darwin11 compilers: Unknown arg --build=x86_64-apple-darwin11 compilers: Checking arg --enable-languages=fortran compilers: Unknown arg --enable-languages=fortran compilers: Checking arg --libdir=/opt/local/lib/gfortran47 compilers: Unknown arg --libdir=/opt/local/lib/gfortran47 compilers: Checking arg --libexecdir=/opt/local/libexec/gfortran47 compilers: Unknown arg --libexecdir=/opt/local/libexec/gfortran47 compilers: Checking arg --includedir=/opt/local/include/gfortran47 compilers: Unknown arg --includedir=/opt/local/include/gfortran47 compilers: Checking arg --infodir=/opt/local/share/info compilers: Unknown arg --infodir=/opt/local/share/info compilers: Checking arg --mandir=/opt/local/share/man compilers: Unknown arg --mandir=/opt/local/share/man compilers: Checking arg --datarootdir=/opt/local/share/gfortran-4.7 compilers: Unknown arg --datarootdir=/opt/local/share/gfortran-4.7 compilers: Checking arg --with-local-prefix=/opt/local compilers: Unknown arg --with-local-prefix=/opt/local compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --with-gmp=/opt/local compilers: Unknown arg --with-gmp=/opt/local compilers: Checking arg --with-mpfr=/opt/local compilers: Unknown arg --with-mpfr=/opt/local compilers: Checking arg --with-mpc=/opt/local compilers: Unknown arg --with-mpc=/opt/local compilers: Checking arg --with-ppl=/opt/local compilers: Unknown arg --with-ppl=/opt/local compilers: Checking arg --with-libiconv-prefix=/opt/local compilers: Unknown arg --with-libiconv-prefix=/opt/local compilers: Checking arg STRIP=/opt/local/bin/strip compilers: Unknown arg STRIP=/opt/local/bin/strip compilers: Checking arg STRIP_FOR_TARGET=/opt/local/bin/strip compilers: Unknown arg STRIP_FOR_TARGET=/opt/local/bin/strip compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.7.1 compilers: Unknown arg 4.7.1 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../libgfortran.spec compilers: Unknown arg /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/ compilers: Skipping arg COMPILER_PATH=/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/ compilers: Checking arg LIBRARY_PATH=/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/:/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../../:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/collect2 compilers: Unknown arg /opt/local/libexec/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.4 compilers: Unknown arg 10.8.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Checking arg -lcrt1.10.6.o compilers: Found system library therefor skipping: -lcrt1.10.6.o compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Already in lflags so skipping: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib/gcc compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Already in lflags so skipping: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Already in lflags so skipping: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 compilers: Found library directory: -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 compilers: Checking arg -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. compilers: Found library directory: -L/opt/local/lib/gfortran47 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found library: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.7.1 compilers: Unknown arg 4.7.1 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.8.4 compilers: Unknown arg 10.8.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest compilers: Checking arg -lcrt1.10.6.o compilers: Found system library therefor skipping: -lcrt1.10.6.o compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Already in lflags so skipping: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib/gcc compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib/gcc compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Already in lflags so skipping: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg -L/usr/llvm-gcc-4.2/lib compilers: Already in lflags so skipping: -L/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Already in lflags so skipping: -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Checking arg -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 compilers: Already in lflags so skipping: -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 compilers: Checking arg -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. compilers: Already in lflags so skipping: -L/opt/local/lib/gfortran47 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-133.3 compilers: Unknown arg PROJECT:ld64-133.3 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Unknown arg /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Unknown arg /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 compilers: Checking arg /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Unknown arg /usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg /usr/llvm-gcc-4.2/lib/gcc compilers: Unknown arg /usr/llvm-gcc-4.2/lib/gcc compilers: Checking arg /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Unknown arg /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 compilers: Checking arg /usr/llvm-gcc-4.2/lib compilers: Unknown arg /usr/llvm-gcc-4.2/lib compilers: Checking arg /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Unknown arg /Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib compilers: Checking arg /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 compilers: Unknown arg /opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 compilers: Checking arg /opt/local/lib/gfortran47 compilers: Unknown arg /opt/local/lib/gfortran47 compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Frameworks/ compilers: Unknown arg /Library/Frameworks/ compilers: Checking arg /System/Library/Frameworks/ compilers: Unknown arg /System/Library/Frameworks/ compilers: Libraries needed to link Fortran code with the C linker: ['-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib/gcc', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib', '-lgfortran', '-L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1', '-L/opt/local/lib/gfortran47', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers/conftest sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/cxxobj.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confc.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/cxxobj.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confc.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F:10:0: warning: 'carray.dim[0].stride' may be used uninitialized in this function [-Wuninitialized] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F:4:0: note: 'carray.dim[0].stride' was declared here /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F:9:0: warning: 'carray.dim[0].lbound' may be used uninitialized in this function [-Wuninitialized] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F:4:0: note: 'carray.dim[0].lbound' was declared here /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F:9:0: warning: 'carray.offset' may be used uninitialized in this function [-Wuninitialized] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F:4:0: note: 'carray.offset' was declared here } Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces sh: uname -s Executing: uname -s sh: Darwin Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); abort(); } return; } Popping language C Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/fooobj.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/fooobj.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest sh: arrays [0x7fff5f1c1670 0x7fff5f1c1670 0x7fff5f1c1670] arrays [0x7fff5f1c1620 0x7fff5f1c15d0 0x7fff5f1c1620] pointers do not match! [0x7fff9029e530 0x7fff5f1c1670] [0x10] ERROR while running executable: Could not execute "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest": arrays [0x7fff5f1c1670 0x7fff5f1c1670 0x7fff5f1c1670] arrays [0x7fff5f1c1620 0x7fff5f1c15d0 0x7fff5f1c1620] pointers do not match! [0x7fff9029e530 0x7fff5f1c1670] [0x10] Program received signal SIGABRT: Process abort signal. Backtrace for this error: #0 0x100a49cee #1 0x100a4a404 #2 0x7fff901f8949 Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/configtest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/configtest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -module /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -module /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option '-module' } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -module:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -module:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option '-module:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir' } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fmod=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fmod=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {gfortran: error: unrecognized command line option '-fmod=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir' } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -J/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -J/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers/conftest.F sh: Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1367) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1367) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/Users/markadams/Codes/petsc/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/string.h" 2 3 4 typedef __darwin_size_t size_t; # 79 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 113 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 125 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 139 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((visibility("default"))); char *strndup(const char *, size_t) __attribute__((visibility("default"))); size_t strnlen(const char *, size_t) __attribute__((visibility("default"))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern4(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern8(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern16(void *, const void *, size_t) __attribute__((visibility("default"))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * , void * , ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 71 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((visibility("default"))); int fls(int) __attribute__((visibility("default"))); int flsl(long) __attribute__((visibility("default"))); # 1 "/usr/include/string.h" 1 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char * __dest, const char * __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char * __dest, const char * __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 157 "/usr/include/sys/signal.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((visibility("default"))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((visibility("default"))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 254 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 35 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; typedef __darwin_wchar_t wchar_t; typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 144 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * , const char * , size_t); int mbtowc(wchar_t * , const char * , size_t); int posix_memalign(void **, size_t, size_t) __attribute__((visibility("default"))); void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ); size_t wcstombs(char * , const wchar_t * , size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *, int *); double erand48(unsigned short[3]); char *fcvt(double, int, int *, int *); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * , char * ) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 256 "/usr/include/stdlib.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) __attribute__((visibility("default"))); void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) __attribute__((visibility("default"))); int atexit_b(void (^)(void)) __attribute__((visibility("default"))); void *bsearch_b(const void *, const void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated,visibility("default"))); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int heapsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) __attribute__((visibility("default"))); void psort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) __attribute__((visibility("default"))); void qsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 5 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 4 # 75 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 76 "/usr/include/sys/stat.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 80 "/usr/include/sys/stat.h" 2 3 4 # 153 "/usr/include/sys/stat.h" 3 4 struct ostat { __uint16_t st_dev; ino_t st_ino; mode_t st_mode; nlink_t st_nlink; __uint16_t st_uid; __uint16_t st_gid; __uint16_t st_rdev; __int32_t st_size; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; __int32_t st_blksize; __int32_t st_blocks; __uint32_t st_flags; __uint32_t st_gen; }; # 225 "/usr/include/sys/stat.h" 3 4 struct stat { dev_t st_dev; mode_t st_mode; nlink_t st_nlink; __darwin_ino64_t st_ino; uid_t st_uid; gid_t st_gid; dev_t st_rdev; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; struct timespec st_birthtimespec; off_t st_size; blkcnt_t st_blocks; blksize_t st_blksize; __uint32_t st_flags; __uint32_t st_gen; __int32_t st_lspare; __int64_t st_qspare[2]; }; # 264 "/usr/include/sys/stat.h" 3 4 struct stat64 { dev_t st_dev; mode_t st_mode; nlink_t st_nlink; __darwin_ino64_t st_ino; uid_t st_uid; gid_t st_gid; dev_t st_rdev; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; struct timespec st_birthtimespec; off_t st_size; blkcnt_t st_blocks; blksize_t st_blksize; __uint32_t st_flags; __uint32_t st_gen; __int32_t st_lspare; __int64_t st_qspare[2]; }; # 428 "/usr/include/sys/stat.h" 3 4 int chmod(const char *, mode_t) __asm("_" "chmod" ); int fchmod(int, mode_t) __asm("_" "fchmod" ); int fstat(int, struct stat *) __asm("_" "fstat" "$INODE64"); int lstat(const char *, struct stat *) __asm("_" "lstat" "$INODE64"); int mkdir(const char *, mode_t); int mkfifo(const char *, mode_t); int stat(const char *, struct stat *) __asm("_" "stat" "$INODE64"); int mknod(const char *, mode_t, dev_t); mode_t umask(mode_t); struct _filesec; typedef struct _filesec *filesec_t; int chflags(const char *, __uint32_t); int chmodx_np(const char *, filesec_t); int fchflags(int, __uint32_t); int fchmodx_np(int, filesec_t); int fstatx_np(int, struct stat *, filesec_t) __asm("_" "fstatx_np" "$INODE64"); int lchflags(const char *, __uint32_t) __attribute__((visibility("default"))); int lchmod(const char *, mode_t) __attribute__((visibility("default"))); int lstatx_np(const char *, struct stat *, filesec_t) __asm("_" "lstatx_np" "$INODE64"); int mkdirx_np(const char *, filesec_t); int mkfifox_np(const char *, filesec_t); int statx_np(const char *, struct stat *, filesec_t) __asm("_" "statx_np" "$INODE64"); int umaskx_np(filesec_t) __attribute__((deprecated,visibility("default"))); int fstatx64_np(int, struct stat64 *, filesec_t) __attribute__((deprecated,visibility("default"))); int lstatx64_np(const char *, struct stat64 *, filesec_t) __attribute__((deprecated,visibility("default"))); int statx64_np(const char *, struct stat64 *, filesec_t) __attribute__((deprecated,visibility("default"))); int fstat64(int, struct stat64 *) __attribute__((deprecated,visibility("default"))); int lstat64(const char *, struct stat64 *) __attribute__((deprecated,visibility("default"))); int stat64(const char *, struct stat64 *) __attribute__((deprecated,visibility("default"))); # 6 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_time_t time_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * , size_t, const char * , const struct tm * ) __asm("_" "strftime" ); char *strptime(const char * , const char * , struct tm * ) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * , char * ); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * , struct tm * ); struct tm *localtime_r(const time_t * , struct tm * ); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 67 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 68 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 69 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 70 "/usr/include/sys/time.h" 2 3 4 # 78 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/time.h" 2 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; struct itimerval { struct timeval it_interval; struct timeval it_value; }; # 144 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 187 "/usr/include/sys/time.h" 3 4 struct clockinfo { int hz; int tick; int tickadj; int stathz; int profhz; }; # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * , size_t, const char * , const struct tm * ) __asm("_" "strftime" ); char *strptime(const char * , const char * , struct tm * ) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * , char * ); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * , struct tm * ); struct tm *localtime_r(const time_t * , struct tm * ); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 199 "/usr/include/sys/time.h" 2 3 4 int adjtime(const struct timeval *, struct timeval *); int futimes(int, const struct timeval *); int lutimes(const char *, const struct timeval *) __attribute__((visibility("default"))); int settimeofday(const struct timeval *, const struct timezone *); int getitimer(int, struct itimerval *); int gettimeofday(struct timeval * , void * ); # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * , fd_set * , fd_set * , struct timeval * ) __asm("_" "select" "$1050") ; # 214 "/usr/include/sys/time.h" 2 3 4 int setitimer(int, const struct itimerval * , struct itimerval * ); int utimes(const char *, const struct timeval *); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 38 "/usr/include/math.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 39 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 40 "/usr/include/math.h" 2 3 4 # 52 "/usr/include/math.h" 3 4 typedef float float_t; typedef double double_t; # 110 "/usr/include/math.h" 3 4 extern int __math_errhandling(void); # 138 "/usr/include/math.h" 3 4 extern int __fpclassifyf(float); extern int __fpclassifyd(double); extern int __fpclassifyl(long double); # 182 "/usr/include/math.h" 3 4 static __inline__ int __inline_isfinitef(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isfinited(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isfinitel(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isinff(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isinfd(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isinfl(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnanf(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnand(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnanl(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnormalf(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnormald(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isnormall(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_signbitf(float) __attribute__ ((__always_inline__)); static __inline__ int __inline_signbitd(double) __attribute__ ((__always_inline__)); static __inline__ int __inline_signbitl(long double) __attribute__ ((__always_inline__)); static __inline__ int __inline_isfinitef(float __x) { return __x == __x && __builtin_fabsf(__x) != __builtin_inff(); } static __inline__ int __inline_isfinited(double __x) { return __x == __x && __builtin_fabs(__x) != __builtin_inf(); } static __inline__ int __inline_isfinitel(long double __x) { return __x == __x && __builtin_fabsl(__x) != __builtin_infl(); } static __inline__ int __inline_isinff(float __x) { return __builtin_fabsf(__x) == __builtin_inff(); } static __inline__ int __inline_isinfd(double __x) { return __builtin_fabs(__x) == __builtin_inf(); } static __inline__ int __inline_isinfl(long double __x) { return __builtin_fabsl(__x) == __builtin_infl(); } static __inline__ int __inline_isnanf(float __x) { return __x != __x; } static __inline__ int __inline_isnand(double __x) { return __x != __x; } static __inline__ int __inline_isnanl(long double __x) { return __x != __x; } static __inline__ int __inline_signbitf(float __x) { union { float __f; unsigned int __u; } __u; __u.__f = __x; return (int)(__u.__u >> 31); } static __inline__ int __inline_signbitd(double __x) { union { double __f; unsigned long long __u; } __u; __u.__f = __x; return (int)(__u.__u >> 63); } static __inline__ int __inline_signbitl(long double __x) { union { long double __ld; struct{ unsigned long long __m; unsigned short __sexp; } __p; } __u; __u.__ld = __x; return (int)(__u.__p.__sexp >> 15); } static __inline__ int __inline_isnormalf(float __x) { return __inline_isfinitef(__x) && __builtin_fabsf(__x) >= 1.17549435e-38F; } static __inline__ int __inline_isnormald(double __x) { return __inline_isfinited(__x) && __builtin_fabs(__x) >= 2.2250738585072014e-308; } static __inline__ int __inline_isnormall(long double __x) { return __inline_isfinitel(__x) && __builtin_fabsl(__x) >= 3.36210314311209350626e-4932L; } # 315 "/usr/include/math.h" 3 4 extern float acosf(float); extern double acos(double); extern long double acosl(long double); extern float asinf(float); extern double asin(double); extern long double asinl(long double); extern float atanf(float); extern double atan(double); extern long double atanl(long double); extern float atan2f(float, float); extern double atan2(double, double); extern long double atan2l(long double, long double); extern float cosf(float); extern double cos(double); extern long double cosl(long double); extern float sinf(float); extern double sin(double); extern long double sinl(long double); extern float tanf(float); extern double tan(double); extern long double tanl(long double); extern float acoshf(float); extern double acosh(double); extern long double acoshl(long double); extern float asinhf(float); extern double asinh(double); extern long double asinhl(long double); extern float atanhf(float); extern double atanh(double); extern long double atanhl(long double); extern float coshf(float); extern double cosh(double); extern long double coshl(long double); extern float sinhf(float); extern double sinh(double); extern long double sinhl(long double); extern float tanhf(float); extern double tanh(double); extern long double tanhl(long double); extern float expf(float); extern double exp(double); extern long double expl(long double); extern float exp2f(float); extern double exp2(double); extern long double exp2l(long double); extern float expm1f(float); extern double expm1(double); extern long double expm1l(long double); extern float logf(float); extern double log(double); extern long double logl(long double); extern float log10f(float); extern double log10(double); extern long double log10l(long double); extern float log2f(float); extern double log2(double); extern long double log2l(long double); extern float log1pf(float); extern double log1p(double); extern long double log1pl(long double); extern float logbf(float); extern double logb(double); extern long double logbl(long double); extern float modff(float, float *); extern double modf(double, double *); extern long double modfl(long double, long double *); extern float ldexpf(float, int); extern double ldexp(double, int); extern long double ldexpl(long double, int); extern float frexpf(float, int *); extern double frexp(double, int *); extern long double frexpl(long double, int *); extern int ilogbf(float); extern int ilogb(double); extern int ilogbl(long double); extern float scalbnf(float, int); extern double scalbn(double, int); extern long double scalbnl(long double, int); extern float scalblnf(float, long int); extern double scalbln(double, long int); extern long double scalblnl(long double, long int); extern float fabsf(float); extern double fabs(double); extern long double fabsl(long double); extern float cbrtf(float); extern double cbrt(double); extern long double cbrtl(long double); extern float hypotf(float, float); extern double hypot(double, double); extern long double hypotl(long double, long double); extern float powf(float, float); extern double pow(double, double); extern long double powl(long double, long double); extern float sqrtf(float); extern double sqrt(double); extern long double sqrtl(long double); extern float erff(float); extern double erf(double); extern long double erfl(long double); extern float erfcf(float); extern double erfc(double); extern long double erfcl(long double); extern float lgammaf(float); extern double lgamma(double); extern long double lgammal(long double); extern float tgammaf(float); extern double tgamma(double); extern long double tgammal(long double); extern float ceilf(float); extern double ceil(double); extern long double ceill(long double); extern float floorf(float); extern double floor(double); extern long double floorl(long double); extern float nearbyintf(float); extern double nearbyint(double); extern long double nearbyintl(long double); extern float rintf(float); extern double rint(double); extern long double rintl(long double); extern long int lrintf(float); extern long int lrint(double); extern long int lrintl(long double); extern float roundf(float); extern double round(double); extern long double roundl(long double); extern long int lroundf(float); extern long int lround(double); extern long int lroundl(long double); extern long long int llrintf(float); extern long long int llrint(double); extern long long int llrintl(long double); extern long long int llroundf(float); extern long long int llround(double); extern long long int llroundl(long double); extern float truncf(float); extern double trunc(double); extern long double truncl(long double); extern float fmodf(float, float); extern double fmod(double, double); extern long double fmodl(long double, long double); extern float remainderf(float, float); extern double remainder(double, double); extern long double remainderl(long double, long double); extern float remquof(float, float, int *); extern double remquo(double, double, int *); extern long double remquol(long double, long double, int *); extern float copysignf(float, float); extern double copysign(double, double); extern long double copysignl(long double, long double); extern float nanf(const char *); extern double nan(const char *); extern long double nanl(const char *); extern float nextafterf(float, float); extern double nextafter(double, double); extern long double nextafterl(long double, long double); extern double nexttoward(double, long double); extern float nexttowardf(float, long double); extern long double nexttowardl(long double, long double); extern float fdimf(float, float); extern double fdim(double, double); extern long double fdiml(long double, long double); extern float fmaxf(float, float); extern double fmax(double, double); extern long double fmaxl(long double, long double); extern float fminf(float, float); extern double fmin(double, double); extern long double fminl(long double, long double); extern float fmaf(float, float, float); extern double fma(double, double, double); extern long double fmal(long double, long double, long double); # 558 "/usr/include/math.h" 3 4 extern float __inff(void) __attribute__((visibility("default"))); extern double __inf(void) __attribute__((visibility("default"))); extern long double __infl(void) __attribute__((visibility("default"))); extern float __nan(void) __attribute__((visibility("default"))); # 579 "/usr/include/math.h" 3 4 extern double j0(double) __attribute__((visibility("default"))); extern double j1(double) __attribute__((visibility("default"))); extern double jn(int, double) __attribute__((visibility("default"))); extern double y0(double) __attribute__((visibility("default"))); extern double y1(double) __attribute__((visibility("default"))); extern double yn(int, double) __attribute__((visibility("default"))); extern double scalb(double, double); extern int signgam; # 624 "/usr/include/math.h" 3 4 extern long int rinttol(double) __attribute__((visibility("default"))); extern long int roundtol(double) __attribute__((visibility("default"))); extern double drem(double, double) __attribute__((visibility("default"))); extern int finite(double) __attribute__((visibility("default"))); extern double gamma(double) __attribute__((visibility("default"))); extern double significand(double) __attribute__((visibility("default"))); struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr(struct exception *) __attribute__((visibility("default"))); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_MATH_H" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 81 "/usr/include/sys/socket.h" 2 3 4 # 106 "/usr/include/sys/socket.h" 3 4 typedef __uint8_t sa_family_t; typedef __darwin_socklen_t socklen_t; # 131 "/usr/include/sys/socket.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 220 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 238 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 326 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 339 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 359 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 469 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 509 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 599 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * , socklen_t * ) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * , socklen_t * ) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * , socklen_t * ) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * , socklen_t * ); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * , socklen_t * ) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) __attribute__((visibility("default"))); int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: malloc.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: malloc.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_time_t time_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * , size_t, const char * , const struct tm * ) __asm("_" "strftime" ); char *strptime(const char * , const char * , struct tm * ) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * , char * ); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * , struct tm * ); struct tm *localtime_r(const time_t * , struct tm * ); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: Direct.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:22: error: Ws2tcpip.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: endian.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: endian.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: ieeefp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 61 "/usr/include/strings.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/strings.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/strings.h" 2 3 4 typedef __darwin_size_t size_t; int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((visibility("default"))); int fls(int) __attribute__((visibility("default"))); int flsl(long) __attribute__((visibility("default"))); # 1 "/usr/include/string.h" 1 3 4 # 79 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 113 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 125 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 139 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((visibility("default"))); char *strndup(const char *, size_t) __attribute__((visibility("default"))); size_t strnlen(const char *, size_t) __attribute__((visibility("default"))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern4(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern8(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern16(void *, const void *, size_t) __attribute__((visibility("default"))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * , void * , ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char * __dest, const char * __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char * __dest, const char * __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 29 "/usr/include/sched.h" 2 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/cxxabi.h" 1 3 4 # 18 "/usr/include/cxxabi.h" 3 4 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/stddef.h" 1 3 4 # 152 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 214 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 326 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/stddef.h" 3 4 typedef int wchar_t; # 19 "/usr/include/cxxabi.h" 2 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 20 "/usr/include/cxxabi.h" 2 3 4 namespace std { class type_info; } namespace __cxxabiv1 { extern "C" { extern void * __cxa_allocate_exception(size_t thrown_size) throw(); extern void __cxa_free_exception(void * thrown_exception) throw(); extern void __cxa_throw(void * thrown_exception, struct std::type_info * tinfo, void (*dest)(void *)); extern void * __cxa_get_exception_ptr(void * exceptionObject) throw(); extern void * __cxa_begin_catch(void * exceptionObject) throw(); extern void __cxa_end_catch(); extern std::type_info * __cxa_current_exception_type(); extern void __cxa_rethrow(); extern void __cxa_bad_cast(); extern void __cxa_bad_typeid(); extern void __cxa_pure_virtual(void); extern int __cxa_guard_acquire(uint64_t*); extern void __cxa_guard_release(uint64_t*); extern void __cxa_guard_abort(uint64_t*); extern void* __cxa_vec_new(size_t element_count, size_t element_size, size_t padding_size, void (*constructor)(void*), void (*destructor)(void*) ); extern void* __cxa_vec_new2(size_t element_count, size_t element_size, size_t padding_size, void (*constructor)(void*), void (*destructor)(void*), void* (*alloc)(size_t), void (*dealloc)(void*) ); extern void* __cxa_vec_new3(size_t element_count, size_t element_size, size_t padding_size, void (*constructor)(void*), void (*destructor)(void*), void* (*alloc)(size_t), void (*dealloc)(void*, size_t) ); extern void __cxa_vec_ctor(void* array_address, size_t element_count, size_t element_size, void (*constructor)(void*), void (*destructor)(void*) ); extern void __cxa_vec_dtor(void* array_address, size_t element_count, size_t element_size, void (*destructor)(void*) ); extern void __cxa_vec_cleanup(void* array_address, size_t element_count, size_t element_size, void (*destructor)(void*) ); extern void __cxa_vec_delete(void* array_address, size_t element_size, size_t padding_size, void (*destructor)(void*) ); extern void __cxa_vec_delete2(void* array_address, size_t element_size, size_t padding_size, void (*destructor)(void*), void (*dealloc)(void*) ); extern void __cxa_vec_delete3(void* __array_address, size_t element_size, size_t padding_size, void (*destructor)(void*), void (*dealloc) (void*, size_t)); extern void __cxa_vec_cctor(void* dest_array, void* src_array, size_t element_count, size_t element_size, void (*constructor) (void*, void*), void (*destructor)(void*) ); extern int __cxa_atexit(void (*f)(void*), void* p, void* d); extern int __cxa_finalize(void*); extern char* __cxa_demangle(const char* mangled_name, char* output_buffer, size_t* length, int* status); } } namespace abi = __cxxabiv1; namespace __cxxabiapple { extern "C" { extern void (*__cxa_terminate_handler)(); extern void (*__cxa_unexpected_handler)(); extern void (*__cxa_new_handler)(); extern void * __cxa_current_primary_exception() throw(); extern void __cxa_rethrow_primary_exception(void* primary_exception); extern void __cxa_increment_exception_refcount(void* primary_exception) throw(); extern void __cxa_decrement_exception_refcount(void* primary_exception) throw(); extern bool __cxa_uncaught_exception() throw(); } } # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_CXXABI_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:28: error: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:17: error: dos.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:17: error: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:22: error: WindowsX.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:25: error: sys/sysinfo.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:25: error: sys/sysinfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 67 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 68 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 69 "/usr/include/sys/wait.h" 2 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 157 "/usr/include/sys/signal.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 71 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 72 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((visibility("default"))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((visibility("default"))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 254 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; typedef __darwin_pid_t pid_t; typedef __darwin_id_t id_t; # 116 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 157 "/usr/include/sys/signal.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_sigset_t sigset_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 77 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((visibility("default"))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((visibility("default"))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 118 "/usr/include/sys/wait.h" 2 3 4 # 193 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 194 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 254 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 35 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 81 "/usr/include/stdlib.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; typedef __darwin_rune_t rune_t; typedef __darwin_wchar_t wchar_t; typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 134 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 144 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * , const char * , size_t); int mbtowc(wchar_t * , const char * , size_t); int posix_memalign(void **, size_t, size_t) __attribute__((visibility("default"))); void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ); size_t wcstombs(char * , const wchar_t * , size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *, int *); double erand48(unsigned short[3]); char *fcvt(double, int, int *, int *); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * , char * ) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 256 "/usr/include/stdlib.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) __attribute__((visibility("default"))); void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) __attribute__((visibility("default"))); int atexit_b(void (^)(void)) __attribute__((visibility("default"))); void *bsearch_b(const void *, const void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated,visibility("default"))); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int heapsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) __attribute__((visibility("default"))); void psort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) __attribute__((visibility("default"))); void qsort_b(void *, size_t, size_t, int (^)(const void *, const void *)) __attribute__((visibility("default"))); void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 55 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 56 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 58 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 30 "/usr/include/sched.h" 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 60 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 69 "/usr/include/time.h" 3 4 # 1 "/usr/include/_structs.h" 1 3 4 # 24 "/usr/include/_structs.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 25 "/usr/include/_structs.h" 2 3 4 # 70 "/usr/include/time.h" 2 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_time_t time_t; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 113 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * , size_t, const char * , const struct tm * ) __asm("_" "strftime" ); char *strptime(const char * , const char * , struct tm * ) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * , char * ); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * , struct tm * ); struct tm *localtime_r(const time_t * , struct tm * ); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 61 "/usr/include/pthread.h" 2 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_mach_port_t mach_port_t; typedef __darwin_sigset_t sigset_t; # 147 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 148 "/usr/include/pthread.h" 2 3 4 # 250 "/usr/include/pthread.h" 3 4 int pthread_atfork(void (*)(void), void (*)(void), void (*)(void)); int pthread_attr_destroy(pthread_attr_t *); int pthread_attr_getdetachstate(const pthread_attr_t *, int *); int pthread_attr_getguardsize(const pthread_attr_t * , size_t * ); int pthread_attr_getinheritsched(const pthread_attr_t * , int * ); int pthread_attr_getschedparam(const pthread_attr_t * , struct sched_param * ); int pthread_attr_getschedpolicy(const pthread_attr_t * , int * ); int pthread_attr_getscope(const pthread_attr_t * , int * ); int pthread_attr_getstack(const pthread_attr_t * , void ** , size_t * ); int pthread_attr_getstackaddr(const pthread_attr_t * , void ** ); int pthread_attr_getstacksize(const pthread_attr_t * , size_t * ); int pthread_attr_init(pthread_attr_t *); int pthread_attr_setdetachstate(pthread_attr_t *, int ); int pthread_attr_setguardsize(pthread_attr_t *, size_t ); int pthread_attr_setinheritsched(pthread_attr_t *, int ); int pthread_attr_setschedparam(pthread_attr_t * , const struct sched_param * ); int pthread_attr_setschedpolicy(pthread_attr_t *, int ); int pthread_attr_setscope(pthread_attr_t *, int); int pthread_attr_setstack(pthread_attr_t *, void *, size_t ); int pthread_attr_setstackaddr(pthread_attr_t *, void *); int pthread_attr_setstacksize(pthread_attr_t *, size_t ); int pthread_cancel(pthread_t ) __asm("_" "pthread_cancel" ); int pthread_cond_broadcast(pthread_cond_t *); int pthread_cond_destroy(pthread_cond_t *); int pthread_cond_init(pthread_cond_t * , const pthread_condattr_t * ) __asm("_" "pthread_cond_init" ); int pthread_cond_signal(pthread_cond_t *); int pthread_cond_timedwait(pthread_cond_t * , pthread_mutex_t * , const struct timespec * ) __asm("_" "pthread_cond_timedwait" ); int pthread_cond_wait(pthread_cond_t * , pthread_mutex_t * ) __asm("_" "pthread_cond_wait" ); int pthread_condattr_destroy(pthread_condattr_t *); int pthread_condattr_init(pthread_condattr_t *); int pthread_condattr_getpshared(const pthread_condattr_t * , int * ); int pthread_condattr_setpshared(pthread_condattr_t *, int ); int pthread_create(pthread_t * , const pthread_attr_t * , void *(*)(void *), void * ); int pthread_detach(pthread_t ); int pthread_equal(pthread_t , pthread_t ); void pthread_exit(void *) __attribute__((noreturn)); int pthread_getconcurrency(void); int pthread_getschedparam(pthread_t , int * , struct sched_param * ); void *pthread_getspecific(pthread_key_t ); int pthread_join(pthread_t , void **) __asm("_" "pthread_join" ); int pthread_key_create(pthread_key_t *, void (*)(void *)); int pthread_key_delete(pthread_key_t ); int pthread_mutex_destroy(pthread_mutex_t *); int pthread_mutex_getprioceiling(const pthread_mutex_t * , int * ); int pthread_mutex_init(pthread_mutex_t * , const pthread_mutexattr_t * ); int pthread_mutex_lock(pthread_mutex_t *); int pthread_mutex_setprioceiling(pthread_mutex_t * , int, int * ); int pthread_mutex_trylock(pthread_mutex_t *); int pthread_mutex_unlock(pthread_mutex_t *); int pthread_mutexattr_destroy(pthread_mutexattr_t *) __asm("_" "pthread_mutexattr_destroy" ); int pthread_mutexattr_getprioceiling(const pthread_mutexattr_t * , int * ); int pthread_mutexattr_getprotocol(const pthread_mutexattr_t * , int * ); int pthread_mutexattr_getpshared(const pthread_mutexattr_t * , int * ); int pthread_mutexattr_gettype(const pthread_mutexattr_t * , int * ); int pthread_mutexattr_init(pthread_mutexattr_t *); int pthread_mutexattr_setprioceiling(pthread_mutexattr_t *, int); int pthread_mutexattr_setprotocol(pthread_mutexattr_t *, int); int pthread_mutexattr_setpshared(pthread_mutexattr_t *, int ); int pthread_mutexattr_settype(pthread_mutexattr_t *, int); int pthread_once(pthread_once_t *, void (*)(void)); int pthread_rwlock_destroy(pthread_rwlock_t * ) __asm("_" "pthread_rwlock_destroy" ); int pthread_rwlock_init(pthread_rwlock_t * , const pthread_rwlockattr_t * ) __asm("_" "pthread_rwlock_init" ); int pthread_rwlock_rdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_rdlock" ); int pthread_rwlock_tryrdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_tryrdlock" ); int pthread_rwlock_trywrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_trywrlock" ); int pthread_rwlock_wrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_wrlock" ); int pthread_rwlock_unlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_unlock" ); int pthread_rwlockattr_destroy(pthread_rwlockattr_t *); int pthread_rwlockattr_getpshared(const pthread_rwlockattr_t * , int * ); int pthread_rwlockattr_init(pthread_rwlockattr_t *); int pthread_rwlockattr_setpshared(pthread_rwlockattr_t *, int ); pthread_t pthread_self(void); int pthread_setcancelstate(int , int *) __asm("_" "pthread_setcancelstate" ); int pthread_setcanceltype(int , int *) __asm("_" "pthread_setcanceltype" ); int pthread_setconcurrency(int); int pthread_setschedparam(pthread_t , int , const struct sched_param *); int pthread_setspecific(pthread_key_t , const void *); void pthread_testcancel(void) __asm("_" "pthread_testcancel" ); int pthread_is_threaded_np(void); int pthread_threadid_np(pthread_t,__uint64_t*) __attribute__((visibility("default"))); int pthread_rwlock_longrdlock_np(pthread_rwlock_t *) __attribute__((visibility("default"))); int pthread_rwlock_yieldwrlock_np(pthread_rwlock_t *) __attribute__((visibility("default"))); int pthread_rwlock_downgrade_np(pthread_rwlock_t *); int pthread_rwlock_upgrade_np(pthread_rwlock_t *); int pthread_rwlock_tryupgrade_np(pthread_rwlock_t *); int pthread_rwlock_held_np(pthread_rwlock_t *); int pthread_rwlock_rdheld_np(pthread_rwlock_t *); int pthread_rwlock_wrheld_np(pthread_rwlock_t *); int pthread_getname_np(pthread_t,char*,size_t) __attribute__((visibility("default"))); int pthread_setname_np(const char*) __attribute__((visibility("default"))); int pthread_main_np(void); mach_port_t pthread_mach_thread_np(pthread_t); size_t pthread_get_stacksize_np(pthread_t); void * pthread_get_stackaddr_np(pthread_t); int pthread_cond_signal_thread_np(pthread_cond_t *, pthread_t); int pthread_cond_timedwait_relative_np(pthread_cond_t *, pthread_mutex_t *, const struct timespec *); int pthread_create_suspended_np(pthread_t *, const pthread_attr_t *, void *(*)(void *), void *); int pthread_kill(pthread_t, int); pthread_t pthread_from_mach_thread_np(mach_port_t) __attribute__((visibility("default"))); int pthread_sigmask(int, const sigset_t *, sigset_t *) __asm("_" "pthread_sigmask" ); void pthread_yield_np(void); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 26 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 27 "/usr/include/setjmp.h" 2 3 4 # 36 "/usr/include/setjmp.h" 3 4 typedef int jmp_buf[((9 * 2) + 3 + 16)]; typedef int sigjmp_buf[((9 * 2) + 3 + 16) + 1]; # 72 "/usr/include/setjmp.h" 3 4 extern int setjmp(jmp_buf); extern void longjmp(jmp_buf, int) __attribute__((noreturn)); int _setjmp(jmp_buf); void _longjmp(jmp_buf, int) __attribute__((noreturn)); int sigsetjmp(sigjmp_buf, int); void siglongjmp(sigjmp_buf, int) __attribute__((noreturn)); void longjmperror(void); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 70 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 71 "/usr/include/sys/utsname.h" 2 3 4 struct utsname { char sysname[256]; char nodename[256]; char release[256]; char version[256]; char machine[256]; }; int uname(struct utsname *); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 69 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 70 "/usr/include/i386/endian.h" 2 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 40 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 41 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 1 3 4 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/syslimits.h" 1 3 4 # 8 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 1 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 1 3 4 # 1 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/syslimits.h" 1 3 4 # 8 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 63 "/usr/include/limits.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 64 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 66 "/usr/include/limits.h" 2 3 4 # 16 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 16 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 23 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 78 "/usr/include/sys/fcntl.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 79 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 81 "/usr/include/sys/fcntl.h" 2 3 4 typedef __darwin_size_t size_t; typedef __darwin_mode_t mode_t; typedef __darwin_off_t off_t; typedef __darwin_pid_t pid_t; # 359 "/usr/include/sys/fcntl.h" 3 4 struct flock { off_t l_start; off_t l_len; pid_t l_pid; short l_type; short l_whence; }; # 374 "/usr/include/sys/fcntl.h" 3 4 struct radvisory { off_t ra_offset; int ra_count; }; # 386 "/usr/include/sys/fcntl.h" 3 4 typedef struct fsignatures { off_t fs_file_start; void *fs_blob_start; size_t fs_blob_size; } fsignatures_t; # 400 "/usr/include/sys/fcntl.h" 3 4 typedef struct fstore { unsigned int fst_flags; int fst_posmode; off_t fst_offset; off_t fst_length; off_t fst_bytesalloc; } fstore_t; typedef struct fbootstraptransfer { off_t fbt_offset; size_t fbt_length; void *fbt_buffer; } fbootstraptransfer_t; # 438 "/usr/include/sys/fcntl.h" 3 4 #pragma pack(4) struct log2phys { unsigned int l2p_flags; off_t l2p_contigbytes; off_t l2p_devoffset; }; #pragma pack() # 461 "/usr/include/sys/fcntl.h" 3 4 struct _filesec; typedef struct _filesec *filesec_t; typedef enum { FILESEC_OWNER = 1, FILESEC_GROUP = 2, FILESEC_UUID = 3, FILESEC_MODE = 4, FILESEC_ACL = 5, FILESEC_GRPUUID = 6, FILESEC_ACL_RAW = 100, FILESEC_ACL_ALLOCSIZE = 101 } filesec_property_t; int open(const char *, int, ...) __asm("_" "open" ); int creat(const char *, mode_t) __asm("_" "creat" ); int fcntl(int, int, ...) __asm("_" "fcntl" ); int openx_np(const char *, int, filesec_t); int open_dprotected_np ( const char *, int, int, int, ...); int flock(int, int); filesec_t filesec_init(void); filesec_t filesec_dup(filesec_t); void filesec_free(filesec_t); int filesec_get_property(filesec_t, filesec_property_t, void *); int filesec_query_property(filesec_t, filesec_property_t, int *); int filesec_set_property(filesec_t, filesec_property_t, const void *); int filesec_unset_property(filesec_t, filesec_property_t) __attribute__((visibility("default"))); # 23 "/usr/include/fcntl.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fenv.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/fenv.h" 1 3 4 # 14 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/fenv.h" 3 4 #pragma GCC fenv # 1 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/fenv.h" 1 3 4 # 14 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/fenv.h" 3 4 #pragma GCC fenv # 1 "/usr/include/fenv.h" 1 3 4 # 129 "/usr/include/fenv.h" 3 4 typedef struct { unsigned short __control; unsigned short __status; unsigned int __mxcsr; char __reserved[8]; } fenv_t; typedef unsigned short fexcept_t; # 156 "/usr/include/fenv.h" 3 4 extern const fenv_t _FE_DFL_ENV; # 180 "/usr/include/fenv.h" 3 4 extern const fenv_t _FE_DFL_DISABLE_SSE_DENORMS_ENV; # 233 "/usr/include/fenv.h" 3 4 extern int feclearexcept(int ); extern int fegetexceptflag(fexcept_t * , int ); extern int feraiseexcept(int ); extern int fesetexceptflag(const fexcept_t * , int ); extern int fetestexcept(int ); # 254 "/usr/include/fenv.h" 3 4 extern int fegetround(void); extern int fesetround(int ); # 287 "/usr/include/fenv.h" 3 4 extern int fegetenv(fenv_t * ); extern int feholdexcept(fenv_t * ); extern int fesetenv(const fenv_t * ); extern int feupdateenv(const fenv_t * ); # 17 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/fenv.h" 2 3 4 # 17 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/fenv.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_FENV_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/string.h" 2 3 4 typedef __darwin_size_t size_t; # 79 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 113 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 125 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 139 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((visibility("default"))); char *strndup(const char *, size_t) __attribute__((visibility("default"))); size_t strnlen(const char *, size_t) __attribute__((visibility("default"))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern4(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern8(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern16(void *, const void *, size_t) __attribute__((visibility("default"))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * , void * , ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 71 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((visibility("default"))); int fls(int) __attribute__((visibility("default"))); int flsl(long) __attribute__((visibility("default"))); # 1 "/usr/include/string.h" 1 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char * __dest, const char * __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char * __dest, const char * __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: memory.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/memory.h" 1 3 4 # 36 "/usr/include/memory.h" 3 4 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/string.h" 2 3 4 typedef __darwin_size_t size_t; # 79 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 113 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 125 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 139 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) __attribute__((visibility("default"))); char *strndup(const char *, size_t) __attribute__((visibility("default"))); size_t strnlen(const char *, size_t) __attribute__((visibility("default"))); char *strsignal(int sig); # 155 "/usr/include/string.h" 3 4 typedef __darwin_ssize_t ssize_t; void *memmem(const void *, size_t, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern4(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern8(void *, const void *, size_t) __attribute__((visibility("default"))); void memset_pattern16(void *, const void *, size_t) __attribute__((visibility("default"))); char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * , void * , ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 71 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) __attribute__((visibility("default"))); int fls(int) __attribute__((visibility("default"))); int flsl(long) __attribute__((visibility("default"))); # 1 "/usr/include/string.h" 1 3 4 # 95 "/usr/include/strings.h" 2 3 4 # 181 "/usr/include/string.h" 2 3 4 # 190 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 32 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 2 3 4 # 58 "/usr/include/secure/_string.h" 3 4 static __inline void * __inline_memcpy_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memcpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memmove_chk (void *__dest, const void *__src, size_t __len) { return __builtin___memmove_chk (__dest, __src, __len, __builtin_object_size (__dest, 0)); } static __inline void * __inline_memset_chk (void *__dest, int __val, size_t __len) { return __builtin___memset_chk (__dest, __val, __len, __builtin_object_size (__dest, 0)); } static __inline char * __inline_strcpy_chk (char * __dest, const char * __src) { return __builtin___strcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpcpy_chk (char *__dest, const char *__src) { return __builtin___stpcpy_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_stpncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___stpncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncpy_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncpy_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strcat_chk (char * __dest, const char * __src) { return __builtin___strcat_chk (__dest, __src, __builtin_object_size (__dest, 2 > 1)); } static __inline char * __inline_strncat_chk (char * __dest, const char * __src, size_t __len) { return __builtin___strncat_chk (__dest, __src, __len, __builtin_object_size (__dest, 2 > 1)); } # 191 "/usr/include/string.h" 2 3 4 # 36 "/usr/include/memory.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_MEMORY_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 72 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 74 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 75 "/usr/include/sys/times.h" 2 3 4 typedef __darwin_clock_t clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t times(struct tms *); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:16: error: io.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:16: error: io.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 46 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 47 "/usr/include/pwd.h" 2 3 4 typedef __darwin_gid_t gid_t; typedef __darwin_size_t size_t; typedef __darwin_uid_t uid_t; # 96 "/usr/include/pwd.h" 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; __darwin_time_t pw_change; char *pw_class; char *pw_gecos; char *pw_dir; char *pw_shell; __darwin_time_t pw_expire; }; struct passwd *getpwuid(uid_t); struct passwd *getpwnam(const char *); int getpwuid_r(uid_t, struct passwd *, char *, size_t, struct passwd **); int getpwnam_r(const char *, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent(void); void setpwent(void); void endpwent(void); # 1 "/usr/include/uuid/uuid.h" 1 3 4 # 42 "/usr/include/uuid/uuid.h" 3 4 typedef __darwin_uuid_t uuid_t; typedef __darwin_uuid_string_t uuid_string_t; # 57 "/usr/include/uuid/uuid.h" 3 4 void uuid_clear(uuid_t uu); int uuid_compare(const uuid_t uu1, const uuid_t uu2); void uuid_copy(uuid_t dst, const uuid_t src); void uuid_generate(uuid_t out); void uuid_generate_random(uuid_t out); void uuid_generate_time(uuid_t out); int uuid_is_null(const uuid_t uu); int uuid_parse(const uuid_string_t in, uuid_t uu); void uuid_unparse(const uuid_t uu, uuid_string_t out); void uuid_unparse_lower(const uuid_t uu, uuid_string_t out); void uuid_unparse_upper(const uuid_t uu, uuid_string_t out); # 123 "/usr/include/pwd.h" 2 3 4 int setpassent(int); char *user_from_uid(uid_t, int); struct passwd *getpwuuid(uuid_t); int getpwuuid_r(uuid_t, struct passwd *, char *, size_t, struct passwd **); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/float.h" 1 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 79 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 87 "/usr/include/sys/param.h" 2 3 4 # 96 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 97 "/usr/include/sys/param.h" 2 3 4 # 110 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/machine/param.h" 1 3 4 # 35 "/usr/include/machine/param.h" 3 4 # 1 "/usr/include/i386/param.h" 1 3 4 # 75 "/usr/include/i386/param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 76 "/usr/include/i386/param.h" 2 3 4 # 36 "/usr/include/machine/param.h" 2 3 4 # 111 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 1 3 4 # 1 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/syslimits.h" 1 3 4 # 8 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 1 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 1 3 4 # 1 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/syslimits.h" 1 3 4 # 8 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 64 "/usr/include/limits.h" 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 16 "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 16 "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h" 2 3 4 # 114 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 55 "/usr/include/i386/signal.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 56 "/usr/include/i386/signal.h" 2 3 4 # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 148 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 57 "/usr/include/sys/_structs.h" 3 4 # 1 "/usr/include/machine/_structs.h" 1 3 4 # 29 "/usr/include/machine/_structs.h" 3 4 # 1 "/usr/include/i386/_structs.h" 1 3 4 # 38 "/usr/include/i386/_structs.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 39 "/usr/include/i386/_structs.h" 2 3 4 # 48 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 86 "/usr/include/i386/_structs.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 127 "/usr/include/i386/_structs.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_structs.h" 2 3 4 # 58 "/usr/include/sys/_structs.h" 2 3 4 # 75 "/usr/include/sys/_structs.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; # 128 "/usr/include/sys/_structs.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; # 218 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_sigaltstack stack_t; # 227 "/usr/include/sys/_structs.h" 3 4 typedef struct __darwin_ucontext ucontext_t; # 149 "/usr/include/sys/signal.h" 2 3 4 # 162 "/usr/include/sys/signal.h" 3 4 typedef __darwin_sigset_t sigset_t; # 175 "/usr/include/sys/signal.h" 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 286 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 348 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 365 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 384 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 406 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 117 "/usr/include/sys/param.h" 2 3 4 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 86 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 87 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 88 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 66 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 71 "/usr/include/netinet/in.h" 2 3 4 typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 71 "/usr/include/i386/types.h" 2 3 4 # 80 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 114 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; # 135 "/usr/include/sys/types.h" 3 4 typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 106 "/usr/include/sys/socket.h" 3 4 typedef __uint8_t sa_family_t; typedef __darwin_socklen_t socklen_t; # 131 "/usr/include/sys/socket.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 220 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 238 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 326 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 339 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 359 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 469 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 509 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 599 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * , socklen_t * ) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * , socklen_t * ) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * , socklen_t * ) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * , socklen_t * ); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * , socklen_t * ) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) __attribute__((visibility("default"))); int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 88 "/usr/include/netinet/in.h" 2 3 4 # 307 "/usr/include/netinet/in.h" 3 4 struct in_addr { in_addr_t s_addr; }; # 380 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { __uint8_t sin_len; sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; char sin_zero[8]; }; # 398 "/usr/include/netinet/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; # 506 "/usr/include/netinet/in.h" 3 4 struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; #pragma pack(4) struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_sourceaddr; struct in_addr imr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; # 554 "/usr/include/netinet/in.h" 3 4 struct __msfilterreq { uint32_t msfr_ifindex; uint32_t msfr_fmode; uint32_t msfr_nsrcs; uint32_t __msfr_align; struct sockaddr_storage msfr_group; struct sockaddr_storage *msfr_srcs; }; #pragma pack() struct sockaddr; int setipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t, uint32_t, struct in_addr *) __attribute__((visibility("default"))); int getipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t *, uint32_t *, struct in_addr *) __attribute__((visibility("default"))); int setsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t, uint32_t, struct sockaddr_storage *) __attribute__((visibility("default"))); int getsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t *, uint32_t *, struct sockaddr_storage *) __attribute__((visibility("default"))); # 617 "/usr/include/netinet/in.h" 3 4 struct in_pktinfo { unsigned int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 661 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/netinet6/in6.h" 1 3 4 # 158 "/usr/include/netinet6/in6.h" 3 4 struct in6_addr { union { __uint8_t __u6_addr8[16]; __uint16_t __u6_addr16[8]; __uint32_t __u6_addr32[4]; } __u6_addr; }; # 176 "/usr/include/netinet6/in6.h" 3 4 struct sockaddr_in6 { __uint8_t sin6_len; sa_family_t sin6_family; in_port_t sin6_port; __uint32_t sin6_flowinfo; struct in6_addr sin6_addr; __uint32_t sin6_scope_id; }; # 218 "/usr/include/netinet6/in6.h" 3 4 extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; extern const struct in6_addr in6addr_nodelocal_allnodes; extern const struct in6_addr in6addr_linklocal_allnodes; extern const struct in6_addr in6addr_linklocal_allrouters; extern const struct in6_addr in6addr_linklocal_allv2routers; # 526 "/usr/include/netinet6/in6.h" 3 4 struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 621 "/usr/include/netinet6/in6.h" 3 4 struct cmsghdr; extern int inet6_option_space(int); extern int inet6_option_init(void *, struct cmsghdr **, int); extern int inet6_option_append(struct cmsghdr *, const __uint8_t *, int, int); extern __uint8_t *inet6_option_alloc(struct cmsghdr *, int, int, int); extern int inet6_option_next(const struct cmsghdr *, __uint8_t **); extern int inet6_option_find(const struct cmsghdr *, __uint8_t **, int); extern size_t inet6_rthdr_space(int, int); extern struct cmsghdr *inet6_rthdr_init(void *, int); extern int inet6_rthdr_add(struct cmsghdr *, const struct in6_addr *, unsigned int); extern int inet6_rthdr_lasthop(struct cmsghdr *, unsigned int); extern int inet6_rthdr_segments(const struct cmsghdr *); extern struct in6_addr *inet6_rthdr_getaddr(struct cmsghdr *, int); extern int inet6_rthdr_getflags(const struct cmsghdr *, int); extern int inet6_opt_init(void *, socklen_t); extern int inet6_opt_append(void *, socklen_t, int, __uint8_t, socklen_t, __uint8_t, void **); extern int inet6_opt_finish(void *, socklen_t, int); extern int inet6_opt_set_val(void *, int, void *, socklen_t); extern int inet6_opt_next(void *, socklen_t, int, __uint8_t *, socklen_t *, void **); extern int inet6_opt_find(void *, socklen_t, int, __uint8_t, socklen_t *, void **); extern int inet6_opt_get_val(void *, int, void *, socklen_t); extern socklen_t inet6_rth_space(int, int); extern void *inet6_rth_init(void *, socklen_t, int, int); extern int inet6_rth_add(void *, const struct in6_addr *); extern int inet6_rth_reverse(const void *, void *); extern int inet6_rth_segments(const void *); extern struct in6_addr *inet6_rth_getaddr(const void *, int); extern void addrsel_policy_init(void); # 662 "/usr/include/netinet/in.h" 2 3 4 int bindresvport(int, struct sockaddr_in *); struct sockaddr; int bindresvport_sa(int, struct sockaddr *); # 89 "/usr/include/netdb.h" 2 3 4 # 108 "/usr/include/netdb.h" 3 4 extern int h_errno; # 119 "/usr/include/netdb.h" 3 4 struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; int p_proto; }; struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; char *ai_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; struct rpcent { char *r_name; char **r_aliases; int r_number; }; # 264 "/usr/include/netdb.h" 3 4 void endhostent(void); void endnetent(void); void endprotoent(void); void endservent(void); void freeaddrinfo(struct addrinfo *); const char *gai_strerror(int); int getaddrinfo(const char * , const char * , const struct addrinfo * , struct addrinfo ** ); struct hostent *gethostbyaddr(const void *, socklen_t, int); struct hostent *gethostbyname(const char *); struct hostent *gethostent(void); int getnameinfo(const struct sockaddr * , socklen_t, char * , socklen_t, char * , socklen_t, int); struct netent *getnetbyaddr(uint32_t, int); struct netent *getnetbyname(const char *); struct netent *getnetent(void); struct protoent *getprotobyname(const char *); struct protoent *getprotobynumber(int); struct protoent *getprotoent(void); struct servent *getservbyname(const char *, const char *); struct servent *getservbyport(int, const char *); struct servent *getservent(void); void sethostent(int); void setnetent(int); void setprotoent(int); void setservent(int); void freehostent(struct hostent *); struct hostent *gethostbyname2(const char *, int); struct hostent *getipnodebyaddr(const void *, size_t, int, int *); struct hostent *getipnodebyname(const char *, int, int, int *); struct rpcent *getrpcbyname(const char *name); struct rpcent *getrpcbynumber(int number); struct rpcent *getrpcent(void); void setrpcent(int stayopen); void endrpcent(void); void herror(const char *); const char *hstrerror(int); int innetgr(const char *, const char *, const char *, const char *); int getnetgrent(char **, char **, char **); void endnetgrent(void); void setnetgrent(const char *); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 14 "/usr/include/search.h" 2 3 4 typedef __darwin_size_t size_t; typedef struct entry { char *key; void *data; } ENTRY; typedef enum { FIND, ENTER } ACTION; typedef enum { preorder, postorder, endorder, leaf } VISIT; # 48 "/usr/include/search.h" 3 4 int hcreate(size_t); void hdestroy(void); ENTRY *hsearch(ENTRY, ACTION); void insque(void *, void *); void *lfind(const void *, const void *, size_t *, size_t, int (*)(const void *, const void *)); void *lsearch(const void *, void *, size_t *, size_t, int (*)(const void *, const void *)); void remque(void *); void *tdelete(const void * , void ** , int (*)(const void *, const void *)); void *tfind(const void *, void * const *, int (*)(const void *, const void *)); void *tsearch(const void *, void **, int (*)(const void *, const void *)); void twalk(const void *, void (*)(const void *, VISIT, int)); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:21: error: mathimf.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:21: error: mathimf.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:24: error: sys/procfs.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:24: error: sys/procfs.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 67 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 68 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 69 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 70 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 72 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 100 "/usr/include/sys/_structs.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/resource.h" 2 3 4 typedef __darwin_id_t id_t; typedef __uint64_t rlim_t; # 151 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 162 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 222 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 245 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) __attribute__((visibility("default"))); int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) __attribute__((visibility("default"))); int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 71 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 72 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 138 "/usr/include/sys/unistd.h" 3 4 struct accessx_descriptor { unsigned int ad_name_offset; int ad_flags; int ad_pad[2]; }; # 73 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 74 "/usr/include/unistd.h" 2 3 4 typedef __darwin_gid_t gid_t; typedef __darwin_intptr_t intptr_t; typedef __darwin_off_t off_t; typedef __darwin_pid_t pid_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_uid_t uid_t; typedef __darwin_useconds_t useconds_t; # 458 "/usr/include/unistd.h" 3 4 void _exit(int) __attribute__((noreturn)); int access(const char *, int); unsigned int alarm(unsigned int); int chdir(const char *); int chown(const char *, uid_t, gid_t); int close(int) __asm("_" "close" ); int dup(int); int dup2(int, int); int execl(const char *, const char *, ...); int execle(const char *, const char *, ...); int execlp(const char *, const char *, ...); int execv(const char *, char * const *); int execve(const char *, char * const *, char * const *); int execvp(const char *, char * const *); pid_t fork(void); long fpathconf(int, int); char *getcwd(char *, size_t); gid_t getegid(void); uid_t geteuid(void); gid_t getgid(void); int getgroups(int, gid_t []); char *getlogin(void); pid_t getpgrp(void); pid_t getpid(void); pid_t getppid(void); uid_t getuid(void); int isatty(int); int link(const char *, const char *); off_t lseek(int, off_t, int); long pathconf(const char *, int); int pause(void) __asm("_" "pause" ); int pipe(int [2]); ssize_t read(int, void *, size_t) __asm("_" "read" ); int rmdir(const char *); int setgid(gid_t); int setpgid(pid_t, pid_t); pid_t setsid(void); int setuid(uid_t); unsigned int sleep(unsigned int) __asm("_" "sleep" ); long sysconf(int); pid_t tcgetpgrp(int); int tcsetpgrp(int, pid_t); char *ttyname(int); int ttyname_r(int, char *, size_t) __asm("_" "ttyname_r" ); int unlink(const char *); ssize_t write(int, const void *, size_t) __asm("_" "write" ); # 535 "/usr/include/unistd.h" 3 4 size_t confstr(int, char *, size_t) __asm("_" "confstr" ); int getopt(int, char * const [], const char *) __asm("_" "getopt" ); extern char *optarg; extern int optind, opterr, optopt; # 560 "/usr/include/unistd.h" 3 4 void *brk(const void *); int chroot(const char *) ; char *crypt(const char *, const char *); char *ctermid(char *); void encrypt(char *, int) __asm("_" "encrypt" ); int fchdir(int); long gethostid(void); pid_t getpgid(pid_t); pid_t getsid(pid_t); int getdtablesize(void) ; int getpagesize(void) __attribute__((const)) ; char *getpass(const char *) ; char *getwd(char *) ; int lchown(const char *, uid_t, gid_t) __asm("_" "lchown" ); int lockf(int, int, off_t) __asm("_" "lockf" ); int nice(int) __asm("_" "nice" ); ssize_t pread(int, void *, size_t, off_t) __asm("_" "pread" ); ssize_t pwrite(int, const void *, size_t, off_t) __asm("_" "pwrite" ); void *sbrk(int); pid_t setpgrp(void) __asm("_" "setpgrp" ); int setregid(gid_t, gid_t) __asm("_" "setregid" ); int setreuid(uid_t, uid_t) __asm("_" "setreuid" ); void swab(const void * , void * , ssize_t); void sync(void); int truncate(const char *, off_t); useconds_t ualarm(useconds_t, useconds_t); int usleep(useconds_t) __asm("_" "usleep" ); pid_t vfork(void); int fsync(int) __asm("_" "fsync" ); int ftruncate(int, off_t); int getlogin_r(char *, size_t); # 647 "/usr/include/unistd.h" 3 4 int fchown(int, uid_t, gid_t); int gethostname(char *, size_t); ssize_t readlink(const char * , char * , size_t); int setegid(gid_t); int seteuid(uid_t); int symlink(const char *, const char *); # 1 "/usr/include/sys/select.h" 1 3 4 # 66 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/sys/select.h" 2 3 4 # 78 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 88 "/usr/include/sys/_structs.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 79 "/usr/include/sys/select.h" 2 3 4 # 87 "/usr/include/sys/select.h" 3 4 typedef __darwin_time_t time_t; typedef __darwin_suseconds_t suseconds_t; typedef __darwin_sigset_t sigset_t; # 134 "/usr/include/sys/select.h" 3 4 int pselect(int, fd_set * , fd_set * , fd_set * , const struct timespec * , const sigset_t * ) __asm("_" "pselect" "$1050") ; # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * , fd_set * , fd_set * , struct timeval * ) __asm("_" "select" "$1050") ; # 153 "/usr/include/sys/select.h" 2 3 4 # 663 "/usr/include/unistd.h" 2 3 4 typedef __darwin_dev_t dev_t; typedef __darwin_mode_t mode_t; typedef __darwin_uuid_t uuid_t; void _Exit(int) __attribute__((noreturn)); int accessx_np(const struct accessx_descriptor *, size_t, int *, uid_t); int acct(const char *); int add_profil(char *, size_t, unsigned long, unsigned int); void endusershell(void); int execvP(const char *, const char *, char * const *); char *fflagstostr(unsigned long); int getdomainname(char *, int); int getgrouplist(const char *, int, int *, int *); int gethostuuid(uuid_t, const struct timespec *) __attribute__((visibility("default"))); mode_t getmode(const void *, mode_t); int getpeereid(int, uid_t *, gid_t *); int getsgroups_np(int *, uuid_t); char *getusershell(void); int getwgroups_np(int *, uuid_t); int initgroups(const char *, int); int iruserok(unsigned long, int, const char *, const char *); int iruserok_sa(const void *, int, int, const char *, const char *); int issetugid(void); char *mkdtemp(char *); int mknod(const char *, mode_t, dev_t); int mkpath_np(const char *path, mode_t omode) __attribute__((visibility("default"))); int mkstemp(char *); int mkstemps(char *, int); char *mktemp(char *); int nfssvc(int, void *); int profil(char *, size_t, unsigned long, unsigned int); int pthread_setugid_np(uid_t, gid_t); int pthread_getugid_np( uid_t *, gid_t *); int rcmd(char **, int, const char *, const char *, const char *, int *); int rcmd_af(char **, int, const char *, const char *, const char *, int *, int); int reboot(int); int revoke(const char *); int rresvport(int *); int rresvport_af(int *, int); int ruserok(const char *, int, const char *, const char *); int setdomainname(const char *, int); int setgroups(int, const gid_t *); void sethostid(long); int sethostname(const char *, int); void setkey(const char *) __asm("_" "setkey" ); int setlogin(const char *); void *setmode(const char *) __asm("_" "setmode" ); int setrgid(gid_t); int setruid(uid_t); int setsgroups_np(int, const uuid_t); void setusershell(void); int setwgroups_np(int, const uuid_t); int strtofflags(char **, unsigned long *, unsigned long *); int swapon(const char *); int syscall(int, ...); int ttyslot(void); int undelete(const char *); int unwhiteout(const char *); void *valloc(size_t); extern char *suboptarg; int getsubopt(char **, char * const *, char **); int fgetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((visibility("default"))); int fsetattrlist(int,void*,void*,size_t,unsigned int) __attribute__((visibility("default"))); int getattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "getattrlist" ); int setattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "setattrlist" ); int exchangedata(const char*,const char*,unsigned int); int getdirentriesattr(int,void*,void*,size_t,unsigned int*,unsigned int*,unsigned int*,unsigned int); # 763 "/usr/include/unistd.h" 3 4 struct fssearchblock; struct searchstate; int searchfs(const char *, struct fssearchblock *, unsigned long *, unsigned int, unsigned int, struct searchstate *); int fsctl(const char *,unsigned long,void*,unsigned int); int ffsctl(int,unsigned long,void*,unsigned int) __attribute__((visibility("default"))); int fsync_volume_np(int, int) __attribute__((visibility("default"))); int sync_volume_np(const char *, int) __attribute__((visibility("default"))); extern int optreset; # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 66 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 68 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 20 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; typedef long intptr_t; typedef unsigned long uintptr_t; typedef long int intmax_t; # 106 "/usr/include/stdint.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 144 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 145 "/usr/include/Availability.h" 2 3 4 # 71 "/usr/include/netinet/in.h" 2 3 4 typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 71 "/usr/include/i386/types.h" 2 3 4 # 80 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 114 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; # 135 "/usr/include/sys/types.h" 3 4 typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 106 "/usr/include/sys/socket.h" 3 4 typedef __uint8_t sa_family_t; typedef __darwin_socklen_t socklen_t; # 131 "/usr/include/sys/socket.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 220 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 238 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 326 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 339 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 359 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 469 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 509 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 599 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * , socklen_t * ) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * , socklen_t * ) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * , socklen_t * ) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * , socklen_t * ); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * , socklen_t * ) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) __attribute__((visibility("default"))); int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 88 "/usr/include/netinet/in.h" 2 3 4 # 307 "/usr/include/netinet/in.h" 3 4 struct in_addr { in_addr_t s_addr; }; # 380 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { __uint8_t sin_len; sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; char sin_zero[8]; }; # 398 "/usr/include/netinet/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; # 506 "/usr/include/netinet/in.h" 3 4 struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; #pragma pack(4) struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_sourceaddr; struct in_addr imr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; # 554 "/usr/include/netinet/in.h" 3 4 struct __msfilterreq { uint32_t msfr_ifindex; uint32_t msfr_fmode; uint32_t msfr_nsrcs; uint32_t __msfr_align; struct sockaddr_storage msfr_group; struct sockaddr_storage *msfr_srcs; }; #pragma pack() struct sockaddr; int setipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t, uint32_t, struct in_addr *) __attribute__((visibility("default"))); int getipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t *, uint32_t *, struct in_addr *) __attribute__((visibility("default"))); int setsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t, uint32_t, struct sockaddr_storage *) __attribute__((visibility("default"))); int getsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t *, uint32_t *, struct sockaddr_storage *) __attribute__((visibility("default"))); # 617 "/usr/include/netinet/in.h" 3 4 struct in_pktinfo { unsigned int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 661 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/netinet6/in6.h" 1 3 4 # 158 "/usr/include/netinet6/in6.h" 3 4 struct in6_addr { union { __uint8_t __u6_addr8[16]; __uint16_t __u6_addr16[8]; __uint32_t __u6_addr32[4]; } __u6_addr; }; # 176 "/usr/include/netinet6/in6.h" 3 4 struct sockaddr_in6 { __uint8_t sin6_len; sa_family_t sin6_family; in_port_t sin6_port; __uint32_t sin6_flowinfo; struct in6_addr sin6_addr; __uint32_t sin6_scope_id; }; # 218 "/usr/include/netinet6/in6.h" 3 4 extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; extern const struct in6_addr in6addr_nodelocal_allnodes; extern const struct in6_addr in6addr_linklocal_allnodes; extern const struct in6_addr in6addr_linklocal_allrouters; extern const struct in6_addr in6addr_linklocal_allv2routers; # 526 "/usr/include/netinet6/in6.h" 3 4 struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 621 "/usr/include/netinet6/in6.h" 3 4 struct cmsghdr; extern int inet6_option_space(int); extern int inet6_option_init(void *, struct cmsghdr **, int); extern int inet6_option_append(struct cmsghdr *, const __uint8_t *, int, int); extern __uint8_t *inet6_option_alloc(struct cmsghdr *, int, int, int); extern int inet6_option_next(const struct cmsghdr *, __uint8_t **); extern int inet6_option_find(const struct cmsghdr *, __uint8_t **, int); extern size_t inet6_rthdr_space(int, int); extern struct cmsghdr *inet6_rthdr_init(void *, int); extern int inet6_rthdr_add(struct cmsghdr *, const struct in6_addr *, unsigned int); extern int inet6_rthdr_lasthop(struct cmsghdr *, unsigned int); extern int inet6_rthdr_segments(const struct cmsghdr *); extern struct in6_addr *inet6_rthdr_getaddr(struct cmsghdr *, int); extern int inet6_rthdr_getflags(const struct cmsghdr *, int); extern int inet6_opt_init(void *, socklen_t); extern int inet6_opt_append(void *, socklen_t, int, __uint8_t, socklen_t, __uint8_t, void **); extern int inet6_opt_finish(void *, socklen_t, int); extern int inet6_opt_set_val(void *, int, void *, socklen_t); extern int inet6_opt_next(void *, socklen_t, int, __uint8_t *, socklen_t *, void **); extern int inet6_opt_find(void *, socklen_t, int, __uint8_t, socklen_t *, void **); extern int inet6_opt_get_val(void *, int, void *, socklen_t); extern socklen_t inet6_rth_space(int, int); extern void *inet6_rth_init(void *, socklen_t, int, int); extern int inet6_rth_add(void *, const struct in6_addr *); extern int inet6_rth_reverse(const void *, void *); extern int inet6_rth_segments(const void *); extern struct in6_addr *inet6_rth_getaddr(const void *, int); extern void addrsel_policy_init(void); # 662 "/usr/include/netinet/in.h" 2 3 4 int bindresvport(int, struct sockaddr_in *); struct sockaddr; int bindresvport_sa(int, struct sockaddr *); # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/Users/markadams/Codes/petsc/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c: In function 'getconf_LEVEL1_DCACHE_SIZE': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c:4: error: '_SC_LEVEL1_DCACHE_SIZE' undeclared (first use in this function) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c:4: error: (Each undeclared identifier is reported only once /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c:4: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:78) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:78) Check for 8-bit clean memcmp All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for function vprintf sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'vprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: ================================================================================ TEST checkVFPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:132) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:132) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for function vfprintf sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'vfprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vfprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vfprintf) || defined (__stub___vfprintf) choke me #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_VFPRINTF" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: ================================================================================ TEST checkVSNPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:139) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:139) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for function _vsnprintf sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) choke me #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__vsnprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__vsnprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) choke me #else _vsnprintf(); #endif ; return 0; } Checking for function vsnprintf sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'vsnprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) choke me #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_VSNPRINTF" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: ================================================================================ TEST checkNanosleep from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:183) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:183) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:159) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:169) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:169) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:6: error: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:175) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:175) Checks whether the variable argument list functionality is working sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char rand(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_rand) || defined (__stub___rand) choke me #else rand(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getdomainname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getdomainname) || defined (__stub___getdomainname) choke me #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char realpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_realpath) || defined (__stub___realpath) choke me #else realpath(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlsym sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlsym(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlsym) || defined (__stub___dlsym) choke me #else dlsym(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_DLSYM" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char uname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_uname) || defined (__stub___uname) choke me #else uname(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sleep) || defined (__stub___sleep) choke me #else sleep(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_lseek) || defined (__stub___lseek) choke me #else lseek(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function usleep sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char usleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_usleep) || defined (__stub___usleep) choke me #else usleep(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_USLEEP" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__intel_fast_memset", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__intel_fast_memset", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlclose sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlclose(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlclose) || defined (__stub___dlclose) choke me #else dlclose(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_DLCLOSE" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostname) || defined (__stub___gethostname) choke me #else gethostname(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char clock(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_clock) || defined (__stub___clock) choke me #else clock(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function get_nprocs sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char get_nprocs(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) choke me #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_get_nprocs", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_get_nprocs", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char get_nprocs(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) choke me #else get_nprocs(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_access) || defined (__stub___access) choke me #else access(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlerror(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlerror) || defined (__stub___dlerror) choke me #else dlerror(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char mkstemp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_mkstemp) || defined (__stub___mkstemp) choke me #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'fork' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_fork) || defined (__stub___fork) choke me #else fork(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpagesize) || defined (__stub___getpagesize) choke me #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memalign(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memalign) || defined (__stub___memalign) choke me #else memalign(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memalign(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memalign) || defined (__stub___memalign) choke me #else memalign(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__fullpath", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__fullpath", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostbyname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) choke me #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gettimeofday(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) choke me #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char readlink(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_readlink) || defined (__stub___readlink) choke me #else readlink(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigaction(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigaction) || defined (__stub___sigaction) choke me #else sigaction(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function strcasecmp sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'strcasecmp' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char strcasecmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) choke me #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_STRCASECMP" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlopen sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlopen(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlopen) || defined (__stub___dlopen) choke me #else dlopen(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_DLOPEN" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char drand48(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_drand48) || defined (__stub___drand48) choke me #else drand48(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char socket(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_socket) || defined (__stub___socket) choke me #else socket(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: warning: conflicting types for built-in function 'memmove' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_signal) || defined (__stub___signal) choke me #else signal(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char popen(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_popen) || defined (__stub___popen) choke me #else popen(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getrusage(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getrusage) || defined (__stub___getrusage) choke me #else getrusage(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char times(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_times) || defined (__stub___times) choke me #else times(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__intel_fast_memcpy", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__intel_fast_memcpy", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char time(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_time) || defined (__stub___time) choke me #else time(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sysctlbyname sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysctlbyname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) choke me #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_SYSCTLBYNAME" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpwuid(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpwuid(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpwuid) || defined (__stub___getpwuid) choke me #else getpwuid(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/Users/markadams/Codes/petsc/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize/conftest.c:38: warning: implicit declaration of function 'getpagesize' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize/conftest.c:58: error: expected declaration or statement at end of input } Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link Defined "USE_BYTES_FOR_SIZE" to "1" output from getrusage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/Users/markadams/Codes/petsc/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: sigfpe.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:20: error: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:19: error: fpxcp.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:19: error: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:27: error: floatingpoint.h: No such file or directory ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers/conftest.c:3:27: error: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check_siginfo_t from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: error: '__int64' undeclared (first use in this function) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: error: (Each undeclared identifier is reported only once /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: error: for each function it appears in.) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: error: expected ';' before 'a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:13: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary sh: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c" # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 406 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 407 "/usr/include/sys/cdefs.h" 2 3 4 # 472 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 473 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 typedef signed char int8_t; typedef unsigned char u_int8_t; typedef short int16_t; typedef unsigned short u_int16_t; typedef int int32_t; typedef unsigned int u_int32_t; typedef long long int64_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; typedef __darwin_intptr_t intptr_t; typedef unsigned long uintptr_t; typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 58 "/usr/include/sys/_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[1168]; }; # 94 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 124 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static __inline__ __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((_data << 8) | (_data >> 8)); } static __inline__ __uint32_t _OSSwapInt32( __uint32_t _data ) { return __builtin_bswap32(_data); } static __inline__ __uint64_t _OSSwapInt64( __uint64_t _data ) { return __builtin_bswap64(_data); } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 125 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef __darwin_dev_t dev_t; typedef u_int32_t fixpt_t; typedef __darwin_blkcnt_t blkcnt_t; typedef __darwin_blksize_t blksize_t; typedef __darwin_gid_t gid_t; typedef __uint32_t in_addr_t; typedef __uint16_t in_port_t; typedef __darwin_ino_t ino_t; typedef __darwin_ino64_t ino64_t; typedef __int32_t key_t; typedef __darwin_mode_t mode_t; typedef __uint16_t nlink_t; typedef __darwin_id_t id_t; typedef __darwin_pid_t pid_t; typedef __darwin_off_t off_t; typedef int32_t segsz_t; typedef int32_t swblk_t; typedef __darwin_uid_t uid_t; # 223 "/usr/include/sys/types.h" 3 4 typedef __darwin_clock_t clock_t; typedef __darwin_size_t size_t; typedef __darwin_ssize_t ssize_t; typedef __darwin_time_t time_t; typedef __darwin_useconds_t useconds_t; typedef __darwin_suseconds_t suseconds_t; # 260 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_structs.h" 1 3 4 # 183 "/usr/include/sys/_structs.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[_n/(sizeof(__int32_t) * 8)] & (1<<(_n % (sizeof(__int32_t) * 8)))); } # 261 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 303 "/usr/include/sys/types.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; typedef __darwin_pthread_cond_t pthread_cond_t; typedef __darwin_pthread_condattr_t pthread_condattr_t; typedef __darwin_pthread_mutex_t pthread_mutex_t; typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; typedef __darwin_pthread_once_t pthread_once_t; typedef __darwin_pthread_rwlock_t pthread_rwlock_t; typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; typedef __darwin_pthread_t pthread_t; typedef __darwin_pthread_key_t pthread_key_t; typedef __darwin_fsblkcnt_t fsblkcnt_t; typedef __darwin_fsfilcnt_t fsfilcnt_t; # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double complex x; x = I; ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:115) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:115) Check for complex numbers in namespace std Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:136) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:136) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.F sh: Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:148) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:148) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.F:3.16: d = dreal(3.0) 1 Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4) } Source: program main double precision d d = dreal(3.0) end Compile failed inside link Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:156) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:156) Checks for working const, and if not found defines it to empty string sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:212) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:212) If the machine is big endian, defines WORDS_BIGENDIAN sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:11: error: 'not' undeclared (first use in this function) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:11: error: (Each undeclared identifier is reported only once /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:11: error: for each function it appears in.) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c:11: error: expected ';' before 'big' } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:316) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:316) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types/conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:362) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:362) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/Users/markadams/Codes/petsc/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/Users/markadams/Codes/petsc/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available sh: uname -s Executing: uname -s sh: Darwin ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function socket in library ['socket', 'nsl'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lsocket -lnsl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lsocket -lnsl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: ld: library not found for -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {ld: library not found for -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lsocket -lnsl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function handle_sigfpes in library ['fpe'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lfpe -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lfpe -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: ld: library not found for -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {ld: library not found for -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lfpe -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function socket in library ['socket', 'nsl'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lsocket -lnsl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lsocket -lnsl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: ld: library not found for -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {ld: library not found for -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lsocket -lnsl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function handle_sigfpes in library ['fpe'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lfpe -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lfpe -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: ld: library not found for -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {ld: library not found for -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lfpe -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:224) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:224) Check for sin() in libm, the math library Checking for function sin in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); int main() { double x = 0,y; y = sin(x); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language C Checking for function floor in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double floor(double); int main() { double x = 0,y; y = floor(x); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language C Checking for function log10 in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log10(double); int main() { double x = 0,y; y = log10(x); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language C Checking for function pow in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double pow(double, double); int main() { double x = 0,y ; y = pow(x, x); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:240) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:240) Check for erf() in libm, the math library Checking for function erf in library [] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); int main() { double x = 0,y; y = erf(x); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:249) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:249) Check for tgama() in libm, the math library Checking for function tgamma in library [] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); int main() { double x = 0,y; y = tgamma(x); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkCompression from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:258) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:258) Check for libz, the compression library Checking for function compress in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_compress", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_compress", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Popping language C Checking for function compress in library ['z'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lz -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lz -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_LIBZ" to "1" Popping language C Checking for function uncompress in library ['z'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lz -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -lz -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:279) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:279) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for function clock_gettime in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: warning: implicit declaration of function 'clock_gettime' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: error: 'CLOCK_REALTIME' undeclared (first use in this function) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: error: (Each undeclared identifier is reported only once /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; return 0; } Compile failed inside link Popping language C Checking for function clock_gettime in library ['rt'] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: warning: implicit declaration of function 'clock_gettime' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: error: 'CLOCK_REALTIME' undeclared (first use in this function) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: error: (Each undeclared identifier is reported only once /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c:7: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:295) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:295) Check for the header and libraries necessary for dynamic library manipulation ================================================================================ TEST configureTimers from PETSc.utilities.timer(/Users/markadams/Codes/petsc/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for function MPI_CRAY_barrier in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_MPI_CRAY_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_MPI_CRAY_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/Users/markadams/Codes/petsc/config/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:35) Checks for limits All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/Users/markadams/Codes/petsc/config/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c:6: warning: unused variable 'foo' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/Users/markadams/Codes/petsc/config/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/Users/markadams/Codes/petsc/config/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/Users/markadams/Codes/petsc/config/PETSc/utilities/missing.py:88) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:88) sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c:14: warning: unused variable 'err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.cc sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.cc: In function 'int main()': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.cc:14: warning: unused variable 'err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/Users/markadams/Codes/petsc/config/PETSc/utilities/missing.py:110) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:110) sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language Cxx sh: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.cc Executing: g++ -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: g++ -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/Users/markadams/Codes/petsc/config/PETSc/utilities/missing.py:134) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:134) ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/Users/markadams/Codes/petsc/config/PETSc/utilities/scalarTypes.py:37) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c:6: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_ISNAN" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c:6: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Defined "HAVE_ISINF" to "1" sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c:6: warning: implicit declaration of function '_isnan' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c:6: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__isnan", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__isnan", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c sh: Possible ERROR while running compiler: error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c:6: warning: implicit declaration of function '_finite' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.c:6: warning: unused variable 'a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "__finite", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "__finite", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/Users/markadams/Codes/petsc/config/PETSc/utilities/scalarTypes.py:73) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:73) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/Users/markadams/Codes/petsc/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for function bgl_perfctr_void in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C Checking for function ADIOI_BGL_Open in library [''] [] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); int main() { ADIOI_BGL_Open() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); int main() { ADIOI_BGL_Open() ; return 0; } Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/Users/markadams/Codes/petsc/config/PETSc/utilities/libraryOptions.py:92) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:92) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/Users/markadams/Codes/petsc/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for function in library [''] [] Pushing language FC sh: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.F Executing: gfortran -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.F sh: Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC sh: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gfortran -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for function get_command_argument_ in library [''] ['-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib/gcc', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib', '-lgfortran', '-L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1', '-L/opt/local/lib/gfortran47', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); int main() { get_command_argument_() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_get_command_argument_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_get_command_argument_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); int main() { get_command_argument_() ; return 0; } Popping language C Checking for function getarg_ in library [''] ['-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64', '-L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib/gcc', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1', '-L/usr/llvm-gcc-4.2/lib', '-L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib', '-lgfortran', '-L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1', '-L/opt/local/lib/gfortran47', '-lgfortran', '-lgcc_ext.10.5', '-lquadmath', '-lm', '-lm'] Pushing language C sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); int main() { getarg_() ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_getarg_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_getarg_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); int main() { getarg_() ; return 0; } Popping language C Checking for function ipxfargc_ sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_ipxfargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_ipxfargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_f90_unix_MP_iargc", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_f90_unix_MP_iargc", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function iargc_ sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_iargc_) || defined (__stub___iargc_) choke me #else iargc_(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Possible ERROR while running linker: Undefined symbols for architecture x86_64: "_iargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status output: ret = 256 error message = {Undefined symbols for architecture x86_64: "_iargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: ld returned 1 exit status } Pushing language C Popping language C in gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_iargc_) || defined (__stub___iargc_) choke me #else iargc_(); #endif ; return 0; } Checking for function GETARG@16 sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: error: stray '@' in program /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before numeric constant /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:17:27: error: missing ')' after "defined" /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:17:28: error: missing binary operator before token "16" /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c: In function 'main': /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:20: error: stray '@' in program /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:20: error: 'GETARG' undeclared (first use in this function) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:20: error: (Each undeclared identifier is reported only once /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:20: error: for each function it appears in.) /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c:20: error: expected ';' before numeric constant } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for function _gfortran_iargc sh: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c Executing: gcc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/PETSc.utilities.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C sh: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm Executing: gcc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.functions/conftest.o -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -ldl -lSystem -ldl -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lgfortran -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47 -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm sh: Defined "HAVE__GFORTRAN_IARGC" to "1" Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C ================================================================================ TEST configureMake from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:60) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:60) Check for user specified make - or gmake, make Checking for program /opt/local/bin/gmake...found Defined make macro "MAKE" to "/opt/local/bin/gmake" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:78) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:78) Check for GNU make Checking for program /opt/local/bin/strings...not found Checking for program /opt/local/sbin/strings...not found Checking for program /Applications/kdiff3.app/Contents/MacOS/strings...not found Checking for program /Applications/CMake2.8-6.app/Contents/bin/strings...not found Checking for program /Users/markadams/Codes/git-fat/strings...not found Checking for program /usr/bin/strings...found sh: /usr/bin/strings /opt/local/bin/gmake Executing: /usr/bin/strings /opt/local/bin/gmake sh: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! 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INTERNAL: readdir: %s Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' lookup_file file.c *name != '\0' enter_file strcache_iscached (name) Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %s: Timestamp out of range; substituting %s Current time %04d-%02d-%02d %02d:%02d:%02d .%09d | %s # Files # files hash-table stats: %s: Field '%s' not cached: %s name hname vpath stem # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. print_file question_flag # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Invalid value in `command_state' member! unterminated call to function `%s': missing `%c' abspath addprefix addsuffix basename notdir subst suffix filter filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval Internal error: func_error: '%s' undefined default environment file environment override command line override automatic non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' %s: '%s' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s recursive simple insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument POSIXLY_CORRECT Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. bash rksh dash *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s (remote) remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. Need a job token; we %shave children don't INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Invoking recipe from %s:%lu to update target `%s'. Invoking builtin recipe to update target `%s'. %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) break case continue exec exit export login logout read readonly shift switch test times trap ulimit umask unset while construct_command_argv_internal job.c ap <= end %s (line %d) Bad shell context (!unixy && !batch_mode_shell) Putting child %p (%s) PID %s%s on the chain. start_waiting_job f->command_state == cs_finished cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) vfork INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). [%s] Error %d (ignored) *** [%s] Error %d *** [%s] %s%s (core dumped) Duplicate the job FD Read returned EBADF. make /opt/local/share/locale getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine archives jobserver check-symlink .FEATURES MAKE_RESTARTS MAKEFLAGS MAKE_COMMAND MAKE $(MAKE_COMMAND) -*-command-variables-*- MAKEOVERRIDES ${-*-command-variables-*-} MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR /var/tmp/ GmXXXXXX fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL --eval= -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u main main.c BOGUS_UPDATE_STATUS unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! # Make data base, printed on %s # Finished Make data base on %s %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. MFLAGS always-make directory basic debug environment-overrides help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version verbosity print-directory no-print-directory what-if warn-undefined-variables the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. empty string invalid as file name MAKECMDGOALS quiet stop new-file assume-new assume-old max-load dry-run recon makefile unknown debug level specification `%s' %s: %s[%u]: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s %s: %s virtual memory exhausted write error: %s write error MAKEFILE_LIST Reading makefiles... $(MAKEFILES) GNUmakefile Makefile .INCLUDE_DIRS $(HOME) HOME /opt/local/include /usr/gnu/include /usr/local/include /usr/include read.c v != NULL endef invalid syntax in conditional unexport include -include sinclude recipe commences before first target missing rule before recipe missing separator%s (did you mean TAB instead of 8 spaces?) *p2 != '\0' missing target pattern multiple target patterns target pattern contains no `%%' missing `endif' record_target_var v != 0 Malformed target-specific variable definition prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional extraneous text after `define' directive empty variable name missing `endef', unterminated `define' define extraneous text after `endef' directive private undefine warning: NUL character seen; rest of line ignored Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) Nothing to be done for `%s'. `%s' is up to date. %.2g Warning: File `%s' has modification time %s s in the future /lib /usr/lib /opt/local/lib $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s stat: lstat: readlink: touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. update_file_1 remake.c file->update_status >= 0 && file->update_status <= 2 Using default commands for `%s'. %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** install_pattern_rule rule.c r->suffixes[0] != NULL create_pattern_rule r->suffixes[i] != NULL # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u (%.o) %s # of strings in strcache: %d / lookups = %lu / hits = %lu %s # of strcache buffers: %d (* %d B/buffer = %d B) %s strcache used: total = %d (%d) / max = %d / min = %d / avg = %d %s strcache free: total = %d (%d) / max = %d / min = %d / avg = %d # strcache hash-table stats: add_string strcache.c best->bytesfree > len pop_variable_scope variable.c current_variable_set_list->next != NULL %s%s%s MAKE_VERSION MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # No pattern-specific variable values. # %u pattern-specific variable values environment under -e `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) 3.82 x86_64-apple-darwin12.1.0 $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% glob glob.c next != NULL alnum alpha blank cntrl digit graph lower print punct space upper xdigit $(MAKEOVERRIDES) $(-*-command-variables-*-) $(-*-eval-flags-*-) .out .a .ln .o .c .cc .C .cpp .p .f .F .m .r .y .l .ym .yl .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh #;"*?[]&|<>(){}$`^~! Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:119) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:119) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "OMAKE " to "/opt/local/bin/gmake --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:746) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:746) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI sh: uname -s Executing: uname -s sh: Darwin Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.0.4-106 Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.0.4-106 Pushing language C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/config.packages.MPI Popping language C Pushing language Cxx Popping language Cxx Pushing language FC sh: gfortran -v Executing: gfortran -v sh: Popping language FC sh: uname -s Executing: uname -s sh: Darwin Have to rebuild MPI, /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/args.petsc != /Users/markadams/Codes/petsc/arch-macosx-gnu-O/conf/MPI =============================================================================== Running configure on MPICH; this may take several minutes =============================================================================== sh: cd /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106 && ./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O MAKE=/opt/local/bin/gmake CC="gcc" CFLAGS=" -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O " CXX="g++" CXXFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC " FC="gfortran" FCFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O " F77="gfortran" FFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O " --enable-shared --enable-sharedlibs=gcc-osx --with-device=ch3:sock --without-mpe --with-pm=hydra --enable-g=meminit --enable-fast Executing: cd /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106 && ./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O MAKE=/opt/local/bin/gmake CC="gcc" CFLAGS=" -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O " CXX="g++" CXXFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC " FC="gfortran" FCFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O " F77="gfortran" FFLAGS=" -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O " --enable-shared --enable-sharedlibs=gcc-osx --with-device=ch3:sock --without-mpe --with-pm=hydra --enable-g=meminit --enable-fast sh: Configuring MPICH version 3.0.4 with '--prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O' 'MAKE=/opt/local/bin/gmake' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' Running on system: Darwin localhost 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /opt/local/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... GNU checking whether /opt/local/bin/gmake supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-apple-darwin12.4.0 checking host system type... x86_64-apple-darwin12.4.0 checking how to print strings... printf checking for a sed that does not truncate output... /opt/local/bin/gsed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.4.0 file names to x86_64-apple-darwin12.4.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.4.0 file names to toolchain format... func_convert_file_noop checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /opt/local/bin/gmake supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no checking whether the g++ linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.4.0 dyld checking how to hardcode library paths into programs... immediate checking for getpagesize... yes configure: RUNNING PREREQ FOR ch3:sock configure: ===== configuring src/mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O' 'MAKE=/opt/local/bin/gmake' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /opt/local/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-apple-darwin12.4.0 checking host system type... x86_64-apple-darwin12.4.0 checking how to print strings... printf checking for a sed that does not truncate output... /opt/local/bin/gsed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.4.0 file names to x86_64-apple-darwin12.4.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.4.0 file names to toolchain format... func_convert_file_noop checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: include/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines config.status: include/mplconfig.h is unchanged configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O' --with-atomic-primitives=auto_allow_emulation 'MAKE=/opt/local/bin/gmake' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /opt/local/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-apple-darwin12.4.0 checking host system type... x86_64-apple-darwin12.4.0 checking how to print strings... printf checking for a sed that does not truncate output... /opt/local/bin/gsed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.4.0 file names to x86_64-apple-darwin12.4.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.4.0 file names to toolchain format... func_convert_file_noop checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... no checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sched_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: src/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines config.status: src/opa_config.h is unchanged configure: ===== done with src/openpa configure ===== sourcing /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... no checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. -lgfortran -lquadmath -lm checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 2 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /opt/local/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /opt/local/bin/bash checking whether /opt/local/bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes checking for C type matching Fortran real... float checking for C type matching Fortran double... double checking for C type matching Fortran integer... int checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking size of MPIR_Bsend_data_t... 96 checking for gcc __asm__ and pentium cmpxchgl instruction... no checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes checking for gcc __asm__ and IA64 xchg4 instruction... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking endian.h usability... no checking endian.h presence... no checking for endian.h... no checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for mach_absolute_time... yes checking for gettimeofday... yes checking for mach_absolute_time... (cached) yes checking for mach_timebase_info... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... no checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... none checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking for sched_setaffinity... no checking for sched_getaffinity... no checking for bindprocessor... no checking for thread_policy_set... yes checking whether thread affinity macros defined... no configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... yes checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:sock checking for net/if.h... yes checking for netdb.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... yes checking sys/sockio.h presence... yes checking for sys/sockio.h... yes checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking for netinet/in.h... (cached) yes configure: RUNNING CONFIGURE FOR src/mpid/common/sock checking for strerror... 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(cached) no checking whether we can use struct ifconf... yes configure: ===== configuring src/mpid/common/sock ===== configure: ===== done with src/mpid/common/sock configure ===== configure: ===== configuring src/mpi/romio ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O' 'MAKE=/opt/local/bin/gmake' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND -O2' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -DNDEBUG -DNVALGRIND -O2' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -O2' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -O2' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /opt/local/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /opt/local/bin/gmake... 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(cached) yes checking for large file defines... none setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpif77 setting CFLAGS to -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: adio/include/romioconf.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O' 'MAKE=/opt/local/bin/gmake' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -DNDEBUG -DNVALGRIND -O2' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -DNDEBUG -DNVALGRIND -O2' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -O2' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -O2' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-apple-darwin12.4.0 checking host system type... x86_64-apple-darwin12.4.0 checking target system type... x86_64-apple-darwin12.4.0 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /usr/bin/grep -F checking for a BSD-compatible install... /opt/local/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking for style of include used by /opt/local/bin/gmake... 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(cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... yes checking mach/mach_host.h presence... yes checking for mach/mach_host.h... yes checking mach/mach_init.h usability... yes checking mach/mach_init.h presence... yes checking for mach/mach_init.h... yes checking for host_info... yes checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... yes checking whether HW_NCPU is declared... yes checking for sysctl... yes checking for sysctlbyname... yes checking for pthread_t... yes checking whether function sched_setaffinity is declared... no checking for working CPU_SET... no checking for working CPU_SET_S... no checking for working _syscall3... no checking for KERRIGHED... cannot check without pkg-config checking for lib... no checking for bash... /bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... yes checking whether function fls is declared... yes checking for flsl... yes checking whether function flsl is declared... yes checking for clz... no checking for clzl... no checking for openat... no checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking for getpagesize... yes checking for memalign... no checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... no checking whether pthread_getaffinity_np is declared... no checking for sched_setaffinity... no checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking numaif.h usability... no checking numaif.h presence... no checking for numaif.h... no checking for PCIACCESS... cannot check without pkg-config checking for PCIUTILS... cannot check without pkg-config checking pci/pci.h usability... no checking pci/pci.h presence... no checking for pci/pci.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking X11/Xlib.h usability... no checking X11/Xlib.h presence... no checking for X11/Xlib.h... no checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... cannot check without pkg-config checking for cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic custom xml_nolibxml darwin x86 checking components to build as plugins... checking available processor topology libraries... hwloc checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... meminit checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/src/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: include/hydra_config.h is unchanged config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: tools/topo/hwloc/hwloc/include/private/autogen/config.h is unchanged config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 40 checking for BSD/POSIX style global symbol lister... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... no! link failure configure: creating ./config.lt config.lt: creating libtool checking if the C compiler accepts -Wl,-flat_namespace... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/binding/f90/mpif90model.h config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/include/mpichtimer.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f77/setbot.c config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/binding/f90/mpi_base.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90.sh config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/windev/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: src/include/mpichconf.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-O' 'MAKE=/opt/local/bin/gmake' 'CC=gcc' 'CFLAGS= -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ' 'CXX=g++' 'CXXFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC ' 'FC=gfortran' 'FCFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' 'F77=gfortran' 'FFLAGS= -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ' '--enable-shared' '--enable-sharedlibs=gcc-osx' '--with-device=ch3:sock' '--without-mpe' '--with-pm=hydra' '--enable-g=meminit' '--enable-fast' '--disable-checkerrors' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /opt/local/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /opt/local/bin/gmake sets $(MAKE)... yes checking whether /opt/local/bin/gmake supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /opt/local/bin/gmake supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /opt/local/bin/gmake... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (ar) interface... ar checking for grep that handles long lines and -e... /usr/bin/grep checking for fgrep... /usr/bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... none required checking for library containing pthread_barrier_init... no checking for pthread_create... yes checking for pthread_yield... no checking for pthread_barrier_init... no checking for pthread_barrier_wait... no checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-apple-darwin12.4.0 checking host system type... x86_64-apple-darwin12.4.0 checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1 -L/opt/local/lib/gfortran47/gcc/x86_64-apple-darwin11/4.7.1/../../.. -lgfortran -lquadmath -lm checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -Wl,-flat_namespace) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -Wl,-flat_namespace) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /opt/local/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/spawn/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/errhan/Makefile config.status: creating errors/f77/errhan/addsize.h config.status: creating errors/f77/errhan/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/errhan/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: include/mpitestconf.h is unchanged config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed. =============================================================================== Running make on MPICH; this may take several minutes =============================================================================== sh: cd /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake clean Executing: cd /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake clean sh: Making clean in src/mpl gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' Making clean in src/openpa gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' Making clean in src gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' Making clean in test gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' rm -rf .libs _libs rm -f *.lo gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' Making clean in src/mpi/romio gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' rm -rf .libs _libs rm -rf adio/ad_bg/.libs adio/ad_bg/_libs rm -rf adio/ad_bgl/.libs adio/ad_bgl/_libs rm -rf adio/ad_bglockless/.libs adio/ad_bglockless/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la libpromio.la" || rm -f libromio.la libpromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_bg/*.o rm -f adio/ad_bg/*.lo rm -f adio/ad_bgl/*.o rm -f adio/ad_bgl/*.lo rm -f adio/ad_bglockless/*.o rm -f adio/ad_bglockless/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' Making clean in src/pm/hydra gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making clean in ../../mpl gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' rm -f strsep test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' Making clean in tools/topo/hwloc/hwloc gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in src gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making clean in include gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f *.lo gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making clean in . gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' rm -f src/env/mpichversion test -z "src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod" || rm -f src/binding/f90/mpi.mod-stamp src/binding/f90/mpi.mod src/binding/f90/mpi.lo src/binding/f90/mpi-tmp src/binding/f90/mpi_constants.mod-stamp src/binding/f90/mpi_constants.mod src/binding/f90/mpi_constants.lo src/binding/f90/mpi_constants-tmp src/binding/f90/mpi_sizeofs.mod-stamp src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_sizeofs.lo src/binding/f90/mpi_sizeofs-tmp src/binding/f90/mpi_base.mod-stamp src/binding/f90/mpi_base.mod src/binding/f90/mpi_base.lo src/binding/f90/mpi_base-tmp src/binding/f90/mpifnoext.h src/binding/f90/mpi.mod src/binding/f90/mpi_sizeofs.mod src/binding/f90/mpi_constants.mod src/binding/f90/mpi_base.mod test -z "lib/libmpich.la lib/libpmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la" || rm -f lib/libmpich.la lib/libpmpich.la lib/libmpichcxx.la lib/libfmpich.la lib/libmpichf90.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/f77/.libs src/binding/f77/_libs rm -rf src/binding/f90/.libs src/binding/f90/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mx/.libs src/mpid/ch3/channels/nemesis/netmod/mx/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/newmad/.libs src/mpid/ch3/channels/nemesis/netmod/newmad/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/scif/.libs src/mpid/ch3/channels/nemesis/netmod/scif/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/common/datatype/.libs src/mpid/common/datatype/_libs rm -rf src/mpid/common/datatype/dataloop/.libs src/mpid/common/datatype/dataloop/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/sock/poll/.libs src/mpid/common/sock/poll/_libs rm -rf src/mpid/common/thread/.libs src/mpid/common/thread/_libs rm -rf src/mpid/pamid/src/.libs src/mpid/pamid/src/_libs rm -rf src/mpid/pamid/src/coll/.libs src/mpid/pamid/src/coll/_libs rm -rf src/mpid/pamid/src/coll/allgather/.libs src/mpid/pamid/src/coll/allgather/_libs rm -rf src/mpid/pamid/src/coll/allgatherv/.libs src/mpid/pamid/src/coll/allgatherv/_libs rm -rf src/mpid/pamid/src/coll/allreduce/.libs src/mpid/pamid/src/coll/allreduce/_libs rm -rf src/mpid/pamid/src/coll/alltoall/.libs src/mpid/pamid/src/coll/alltoall/_libs rm -rf src/mpid/pamid/src/coll/alltoallv/.libs src/mpid/pamid/src/coll/alltoallv/_libs rm -rf src/mpid/pamid/src/coll/barrier/.libs src/mpid/pamid/src/coll/barrier/_libs rm -rf src/mpid/pamid/src/coll/bcast/.libs src/mpid/pamid/src/coll/bcast/_libs rm -rf src/mpid/pamid/src/coll/gather/.libs src/mpid/pamid/src/coll/gather/_libs rm -rf src/mpid/pamid/src/coll/gatherv/.libs src/mpid/pamid/src/coll/gatherv/_libs rm -rf src/mpid/pamid/src/coll/reduce/.libs src/mpid/pamid/src/coll/reduce/_libs rm -rf src/mpid/pamid/src/coll/scan/.libs src/mpid/pamid/src/coll/scan/_libs rm -rf src/mpid/pamid/src/coll/scatter/.libs src/mpid/pamid/src/coll/scatter/_libs rm -rf src/mpid/pamid/src/coll/scatterv/.libs src/mpid/pamid/src/coll/scatterv/_libs rm -rf src/mpid/pamid/src/comm/.libs src/mpid/pamid/src/comm/_libs rm -rf src/mpid/pamid/src/dyntask/.libs src/mpid/pamid/src/dyntask/_libs rm -rf src/mpid/pamid/src/misc/.libs src/mpid/pamid/src/misc/_libs rm -rf src/mpid/pamid/src/mpix/.libs src/mpid/pamid/src/mpix/_libs rm -rf src/mpid/pamid/src/onesided/.libs src/mpid/pamid/src/onesided/_libs rm -rf src/mpid/pamid/src/pamix/.libs src/mpid/pamid/src/pamix/_libs rm -rf src/mpid/pamid/src/pt2pt/.libs src/mpid/pamid/src/pt2pt/_libs rm -rf src/mpid/pamid/src/pt2pt/persistent/.libs src/mpid/pamid/src/pt2pt/persistent/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/mpd/.libs src/nameserv/mpd/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pm/smpd/.libs src/pm/smpd/_libs rm -rf src/pm/smpd/sock/poll/.libs src/pm/smpd/sock/poll/_libs rm -rf src/pmi/pmi2/poe/.libs src/pmi/pmi2/poe/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/pmi/smpd/.libs src/pmi/smpd/_libs rm -rf src/util/dbg/.libs src/util/dbg/_libs rm -rf src/util/instrm/.libs src/util/instrm/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/msgs/.libs src/util/msgs/_libs rm -rf src/util/other/.libs src/util/other/_libs rm -rf src/util/param/.libs src/util/param/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs rm -rf src/util/thread/.libs src/util/thread/_libs ( cd test && /opt/local/bin/gmake clean ) gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test' Making clean in mpi gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi' Making clean in util gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/util' rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/util' Making clean in attr gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm fkeyvaltype keyval_double_free rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/attr' Making clean in basic gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/basic' Making clean in datatype gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms" || rm -f blockindexed-misc blockindexed-zero-count contents contig-zero-count contigstruct cxx-types darray-pack darray-cyclic gaddress get-elements get-elements-pairtype getpartelm hindexed-zeros hindexed_block hindexed_block_contents indexed-misc large-count lbub localpack longdouble lots-of-types pairtype-pack pairtype-size-extent simple-commit simple-pack simple-pack-external simple-resized simple-size-extent sizedtypes slice-pack slice-pack-external struct-derived-zeros struct-empty-el struct-ezhov struct-no-real-types struct-pack struct-verydeep struct-zero-count subarray subarray-pack tfree tmatchsize transpose-pack tresized tresized2 triangular-pack typecommit typefree typelb typename unpack unusual-noncontigs zeroblks zeroparms rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/datatype' Making clean in coll gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcast2 bcast3 bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/coll' Making clean in comm gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe-intercomm comm_idup comm_info rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/comm' Making clean in errhan gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "adderr commcall errfatal predef_eh" || rm -f adderr commcall errfatal predef_eh rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errhan' Making clean in group gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/group' Making clean in info gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoenv rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/info' Making clean in init gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/init' Making clean in pt2pt gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv isendself sendself eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel sendflood sendrecv1 sendrecv2 sendrecv3 waitany-null pingping probe-unexp probenull inactivereq waittestnull sendall large_message mprobe rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/pt2pt' Making clean in rma gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example win_info pscw_ordering mutex_bench mutex_bench_shared" || rm -f allocmem ircpi test1 test2 test3 test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest transpose1 transpose2 transpose3 transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfence1 putfidx epochtest getfence1 accfence1 accfence2 adlb_mimic1 putpscw1 accpscw1 getgroup contig_displ test1_am test2_am test3_am test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw rmanull rmazero mixedsync manyrma2 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush reqops req_example win_info pscw_ordering mutex_bench mutex_bench_shared rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/rma' Making clean in topo gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt neighb_coll rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/topo' Making clean in errors gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors' Making clean in attr gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "keyvalmis" || rm -f keyvalmis rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/attr' Making clean in coll gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "noalias rerr bcastlength reduce_local" || rm -f noalias rerr bcastlength reduce_local rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/coll' Making clean in comm gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/comm' Making clean in datatype gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "getcnterr" || rm -f getcnterr rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/datatype' Making clean in group gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/group' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "gerr" || rm -f gerr rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/group' Making clean in pt2pt gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/pt2pt' Making clean in rma gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/rma' Making clean in topo gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartsmall" || rm -f cartsmall rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/topo' Making clean in basic gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/basic' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/basic' Making clean in faults gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/faults' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/faults' Making clean in io gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrret openerr" || rm -f fileerrret openerr rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/io' Making clean in f77 gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77' Making clean in errhan gmake[6]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o gmake[6]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77/errhan' gmake[6]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[6]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77' gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f77' Making clean in f90 gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90' Making clean in errhan gmake[6]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o gmake[6]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90/errhan' gmake[6]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[6]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90' gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/f90' Making clean in cxx gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx' Making clean in io gmake[6]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o gmake[6]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx/io' Making clean in errhan gmake[6]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o gmake[6]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx/errhan' gmake[6]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[6]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx' gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/cxx' Making clean in spawn gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "badport unpub lookup_name" || rm -f badport unpub lookup_name rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors/spawn' gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors' gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/errors' Making clean in manual gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/manual' Making clean in mpi_t gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/manual/mpi_t' gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/manual' test -z "summary.xml summary.tap test-port" || rm -f summary.xml summary.tap test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/manual' gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/manual' Making clean in perf gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/perf' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp-datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/perf' Making clean in mpi_t gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/mpi_t' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "mpi_t_str" || rm -f mpi_t_str rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/mpi_t' Making clean in io gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/io' Making clean in f77 gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77' Making clean in util gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/util' rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/util' Making clean in attr gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f typeattrf typeattr2f typeattr3f rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/attr' Making clean in datatype gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/datatype' Making clean in coll gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/coll' Making clean in pt2pt gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf statusesf greqf mprobef" || rm -f allpairf statusesf greqf mprobef rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/pt2pt' Making clean in info gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/info' Making clean in init gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/init' Making clean in comm gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/comm' Making clean in topo gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/topo' Making clean in ext gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/ext' Making clean in spawn gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/spawn' Making clean in io gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/io' Making clean in rma gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77/rma' gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77' gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f77' Making clean in f90 gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90' Making clean in util gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/util' rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/util' Making clean in timer gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/timer' Making clean in attr gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/attr' Making clean in coll gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/coll' Making clean in datatype gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/datatype' Making clean in pt2pt gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "allpairf90 statusesf90 greqf90 mprobef90" || rm -f allpairf90 statusesf90 greqf90 mprobef90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/pt2pt' Making clean in info gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/info' Making clean in comm gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/comm' Making clean in topo gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/topo' Making clean in ext gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/ext' Making clean in init gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/init' Making clean in misc gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/misc' Making clean in f90types gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/f90types' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "createf90types" || rm -f createf90types rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/f90types' Making clean in rma gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/rma' Making clean in spawn gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/spawn' Making clean in io gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90/io' gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90' gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/f90' Making clean in cxx gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' Making clean in util gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/util' rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/util' Making clean in attr gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/attr' Making clean in pt2pt gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/pt2pt' Making clean in init gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/init' Making clean in info gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/info' Making clean in comm gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/comm' Making clean in coll gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx" || rm -f arcomplex uallredx uallreduce ureduce uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/coll' Making clean in datatype gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "packsizex typecntsx typenamex typemiscx" || rm -f packsizex typecntsx typenamex typemiscx rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/datatype' Making clean in errhan gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/errhan' Making clean in io gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/io' Making clean in rma gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/rma' Making clean in spawn gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx/spawn' gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/cxx' Making clean in threads gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads' Making clean in util gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/util' rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/util' Making clean in pt2pt gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/pt2pt' Making clean in comm gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/comm' Making clean in init gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "initth" || rm -f initth rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/init' Making clean in spawn gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads/spawn' gmake[5]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[5]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads' gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/threads' Making clean in spawn gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns rm -f *.o gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi/spawn' Making clean in . gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi' gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/mpi' Making clean in commands gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test/commands' Making clean in . gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test' rm -rf .libs _libs rm -f *.lo gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/test' rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-O/bin/mpic++ test -z "" || rm -f test -z "" || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/f77/*.o rm -f src/binding/f77/*.lo rm -f src/binding/f90/*.o rm -f src/binding/f90/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f 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rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/common/datatype/*.o rm -f src/mpid/common/datatype/*.lo rm -f src/mpid/common/datatype/dataloop/*.o rm -f src/mpid/common/datatype/dataloop/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/sock/poll/*.o rm -f src/mpid/common/sock/poll/*.lo rm -f src/mpid/common/thread/*.o rm -f src/mpid/common/thread/*.lo rm -f src/mpid/pamid/src/*.o rm -f src/mpid/pamid/src/*.lo rm -f src/mpid/pamid/src/coll/*.o rm -f src/mpid/pamid/src/coll/*.lo rm -f src/mpid/pamid/src/coll/allgather/*.o rm -f src/mpid/pamid/src/coll/allgather/*.lo rm -f src/mpid/pamid/src/coll/allgatherv/*.o rm -f src/mpid/pamid/src/coll/allgatherv/*.lo rm -f src/mpid/pamid/src/coll/allreduce/*.o rm -f src/mpid/pamid/src/coll/allreduce/*.lo rm -f src/mpid/pamid/src/coll/alltoall/*.o rm -f src/mpid/pamid/src/coll/alltoall/*.lo rm -f src/mpid/pamid/src/coll/alltoallv/*.o rm -f src/mpid/pamid/src/coll/alltoallv/*.lo rm -f src/mpid/pamid/src/coll/barrier/*.o rm -f src/mpid/pamid/src/coll/barrier/*.lo rm -f src/mpid/pamid/src/coll/bcast/*.o rm -f src/mpid/pamid/src/coll/bcast/*.lo rm -f src/mpid/pamid/src/coll/gather/*.o rm -f src/mpid/pamid/src/coll/gather/*.lo rm -f src/mpid/pamid/src/coll/gatherv/*.o rm -f src/mpid/pamid/src/coll/gatherv/*.lo rm -f src/mpid/pamid/src/coll/reduce/*.o rm -f src/mpid/pamid/src/coll/reduce/*.lo rm -f src/mpid/pamid/src/coll/scan/*.o rm -f src/mpid/pamid/src/coll/scan/*.lo rm -f src/mpid/pamid/src/coll/scatter/*.o rm -f src/mpid/pamid/src/coll/scatter/*.lo rm -f src/mpid/pamid/src/coll/scatterv/*.o rm -f src/mpid/pamid/src/coll/scatterv/*.lo rm -f src/mpid/pamid/src/comm/*.o rm -f src/mpid/pamid/src/comm/*.lo rm -f src/mpid/pamid/src/dyntask/*.o rm -f src/mpid/pamid/src/dyntask/*.lo rm -f src/mpid/pamid/src/misc/*.o rm -f src/mpid/pamid/src/misc/*.lo rm -f src/mpid/pamid/src/mpix/*.o rm -f src/mpid/pamid/src/mpix/*.lo rm -f src/mpid/pamid/src/onesided/*.o rm -f src/mpid/pamid/src/onesided/*.lo rm -f src/mpid/pamid/src/pamix/*.o rm -f src/mpid/pamid/src/pamix/*.lo rm -f src/mpid/pamid/src/pt2pt/*.o rm -f src/mpid/pamid/src/pt2pt/*.lo rm -f src/mpid/pamid/src/pt2pt/persistent/*.o rm -f src/mpid/pamid/src/pt2pt/persistent/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/mpd/*.o rm -f src/nameserv/mpd/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/smpd/*.o rm -f src/pm/smpd/*.lo rm -f src/pm/smpd/sock/poll/*.o rm -f src/pm/smpd/sock/poll/*.lo rm -f src/pm/util/*.o rm -f src/pmi/pmi2/poe/*.o rm -f src/pmi/pmi2/poe/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/pmi/smpd/*.o rm -f src/pmi/smpd/*.lo rm -f src/util/dbg/*.o rm -f src/util/dbg/*.lo rm -f src/util/instrm/*.o rm -f src/util/instrm/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/msgs/*.o rm -f src/util/msgs/*.lo rm -f src/util/other/*.o rm -f src/util/other/*.lo rm -f src/util/param/*.o rm -f src/util/param/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f src/util/thread/*.o rm -f src/util/thread/*.lo rm -f *.lo gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' Making clean in examples gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/examples' sh: cd /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake -j 7 all Executing: cd /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake -j 7 all sh: /opt/local/bin/gmake all-recursive gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' Making all in src/mpl gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' CC mplstr.lo CC mpltrmem.lo CC mplenv.lo CCLD libmpl.la gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' Making all in src/openpa gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' Making all in src gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' /opt/local/bin/gmake all-am gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' Making all in test gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Nothing to be done for `all'. gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[3]: Nothing to be done for `all-am'. gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' Making all in src/mpi/romio gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/file_c2f.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atalle.lo CC mpi-io/rd_atallb.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str.lo CC 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mpi-io/libpromio_la-fsync.lo CC mpi-io/libpromio_la-get_amode.lo CC mpi-io/libpromio_la-get_atom.lo CC mpi-io/libpromio_la-get_bytoff.lo CC mpi-io/libpromio_la-get_extent.lo CC mpi-io/libpromio_la-get_group.lo CC mpi-io/libpromio_la-get_info.lo CC mpi-io/libpromio_la-get_posn.lo CC mpi-io/libpromio_la-get_posn_sh.lo CC mpi-io/libpromio_la-get_size.lo CC mpi-io/libpromio_la-get_view.lo CC mpi-io/libpromio_la-iread.lo CC mpi-io/libpromio_la-iread_at.lo CC mpi-io/libpromio_la-iread_sh.lo CC mpi-io/libpromio_la-iwrite.lo CC mpi-io/libpromio_la-iwrite_at.lo CC mpi-io/libpromio_la-iwrite_sh.lo CC mpi-io/libpromio_la-open.lo CC mpi-io/libpromio_la-prealloc.lo CC mpi-io/libpromio_la-rd_atallb.lo CC mpi-io/libpromio_la-rd_atalle.lo CC mpi-io/libpromio_la-read.lo CC mpi-io/libpromio_la-read_all.lo CC mpi-io/libpromio_la-read_allb.lo CC mpi-io/libpromio_la-read_alle.lo CC mpi-io/libpromio_la-read_at.lo CC mpi-io/libpromio_la-read_atall.lo CC mpi-io/libpromio_la-read_ord.lo CC mpi-io/libpromio_la-read_ordb.lo CC mpi-io/libpromio_la-read_orde.lo CC mpi-io/libpromio_la-read_sh.lo CC mpi-io/libpromio_la-register_datarep.lo CC mpi-io/libpromio_la-seek.lo CC mpi-io/libpromio_la-seek_sh.lo CC mpi-io/libpromio_la-set_atom.lo CC mpi-io/libpromio_la-set_info.lo CC mpi-io/libpromio_la-set_size.lo CC mpi-io/libpromio_la-set_view.lo CC mpi-io/libpromio_la-wr_atallb.lo CC mpi-io/libpromio_la-wr_atalle.lo CC mpi-io/libpromio_la-write.lo CC mpi-io/libpromio_la-write_all.lo CC mpi-io/libpromio_la-write_allb.lo CC mpi-io/libpromio_la-write_alle.lo CC mpi-io/libpromio_la-write_at.lo CC mpi-io/libpromio_la-write_atall.lo CC mpi-io/libpromio_la-write_ord.lo CC mpi-io/libpromio_la-write_ordb.lo CC mpi-io/libpromio_la-write_orde.lo CC mpi-io/libpromio_la-write_sh.lo CCLD libromio.la CCLD libpromio.la gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' Making all in src/pm/hydra gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making all in ../../mpl gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' gmake[3]: Nothing to be done for `all'. gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' Making all in tools/topo/hwloc/hwloc gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in src gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-darwin.lo CC topology-x86.lo CCLD libhwloc_embedded.la gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making all in include gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[4]: Nothing to be done for `all'. gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[4]: Nothing to be done for `all-am'. gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' CC alloc.lo CC args.lo CC dbg.lo CC env.lo CC launch.lo CC others.lo CC signals.lo CC sock.lo CC string.lo CC topo.lo CC topo_hwloc.lo CC bsci_init.lo CC bsci_finalize.lo CC bsci_launch.lo CC bsci_query_node_list.lo CC bsci_query_proxy_id.lo CC bsci_query_native_int.lo CC bsci_wait.lo CC bsci_env.lo CC bscu_wait.lo CC bscu_cb.lo CC external_common.lo CC external_common_launch.lo CC fork_init.lo CC user_init.lo CC manual_init.lo CC rsh_init.lo CC rsh_env.lo CC ssh_init.lo CC ssh.lo CC ssh_env.lo CC ssh_finalize.lo CC slurm_init.lo CC slurm_launch.lo CC slurm_env.lo CC slurm_query_native_int.lo CC slurm_query_node_list.lo CC slurm_query_proxy_id.lo CC ll_init.lo CC ll_launch.lo CC ll_query_native_int.lo CC ll_query_node_list.lo CC ll_query_proxy_id.lo CC ll_env.lo CC lsf_init.lo CC lsf_query_native_int.lo CC lsf_query_node_list.lo CC lsf_env.lo CC sge_init.lo CC sge_query_native_int.lo CC sge_query_node_list.lo CC sge_env.lo CC pbs_init.lo CC pbs_query_native_int.lo CC pbs_query_node_list.lo CC cobalt_init.lo CC cobalt_query_native_int.lo CC cobalt_query_node_list.lo CC persist_init.lo CC persist_launch.lo CC persist_wait.lo CC ckpoint.lo CC demux.lo CC demux_poll.lo CC demux_select.lo CC debugger.lo CC hydt_ftb_dummy.lo CC uiu.lo CC pmiserv_pmi.lo CC pmiserv_pmi_v1.lo CC pmiserv_pmi_v2.lo CC pmiserv_pmci.lo CC pmiserv_cb.lo CC pmiserv_utils.lo CC common.lo CC pmi_v2_common.lo CC hydra_persist-persist_server.o CC hydra_nameserver-hydra_nameserver.o CC hydra_pmi_proxy-pmip.o CC hydra_pmi_proxy-pmip_cb.o CC hydra_pmi_proxy-pmip_utils.o CC hydra_pmi_proxy-pmip_pmi_v1.o CC hydra_pmi_proxy-pmip_pmi_v2.o CC hydra_pmi_proxy-common.o CC hydra_pmi_proxy-pmi_v2_common.o CC mpiexec.o CC utils.o CCLD libhydra.la CCLD libpm.la CCLD hydra_persist CCLD hydra_pmi_proxy CCLD hydra_nameserver CCLD mpiexec.hydra gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making all in . gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' CC src/mpi/init/initinfo.lo F77 src/binding/f77/setbotf.lo CC src/binding/f77/lib_libpmpich_la-sendf.lo CC src/binding/f77/lib_libpmpich_la-recvf.lo CC src/binding/f77/lib_libpmpich_la-bsendf.lo CC src/binding/f77/lib_libpmpich_la-get_countf.lo CC src/binding/f77/lib_libpmpich_la-ssendf.lo CC src/binding/f77/lib_libpmpich_la-rsendf.lo CC src/binding/f77/lib_libpmpich_la-bufattachf.lo CC src/binding/f77/lib_libpmpich_la-bufdetachf.lo CC src/binding/f77/lib_libpmpich_la-isendf.lo CC src/binding/f77/lib_libpmpich_la-ibsendf.lo CC src/binding/f77/lib_libpmpich_la-issendf.lo CC src/binding/f77/lib_libpmpich_la-irsendf.lo CC src/binding/f77/lib_libpmpich_la-irecvf.lo CC src/binding/f77/lib_libpmpich_la-waitf.lo CC src/binding/f77/lib_libpmpich_la-testf.lo CC src/binding/f77/lib_libpmpich_la-request_freef.lo CC src/binding/f77/lib_libpmpich_la-waitanyf.lo CC src/binding/f77/lib_libpmpich_la-testanyf.lo CC src/binding/f77/lib_libpmpich_la-waitallf.lo CC src/binding/f77/lib_libpmpich_la-testallf.lo CC src/binding/f77/lib_libpmpich_la-waitsomef.lo CC src/binding/f77/lib_libpmpich_la-testsomef.lo CC src/binding/f77/lib_libpmpich_la-iprobef.lo CC src/binding/f77/lib_libpmpich_la-probef.lo CC src/binding/f77/lib_libpmpich_la-cancelf.lo CC src/binding/f77/lib_libpmpich_la-testcancelf.lo CC src/binding/f77/lib_libpmpich_la-send_initf.lo CC src/binding/f77/lib_libpmpich_la-bsend_initf.lo CC src/binding/f77/lib_libpmpich_la-ssend_initf.lo CC src/binding/f77/lib_libpmpich_la-rsend_initf.lo CC src/binding/f77/lib_libpmpich_la-recv_initf.lo CC src/binding/f77/lib_libpmpich_la-startf.lo CC src/binding/f77/lib_libpmpich_la-startallf.lo CC src/binding/f77/lib_libpmpich_la-sendrecvf.lo CC src/binding/f77/lib_libpmpich_la-sndrcvrplf.lo CC src/binding/f77/lib_libpmpich_la-typecontigf.lo CC src/binding/f77/lib_libpmpich_la-type_vectorf.lo CC src/binding/f77/lib_libpmpich_la-type_hvectorf.lo CC src/binding/f77/lib_libpmpich_la-type_indexedf.lo CC src/binding/f77/lib_libpmpich_la-type_hindexedf.lo CC src/binding/f77/lib_libpmpich_la-type_structf.lo CC src/binding/f77/lib_libpmpich_la-type_extentf.lo CC src/binding/f77/lib_libpmpich_la-type_sizef.lo CC src/binding/f77/lib_libpmpich_la-type_lbf.lo CC src/binding/f77/lib_libpmpich_la-type_ubf.lo CC src/binding/f77/lib_libpmpich_la-type_commitf.lo CC src/binding/f77/lib_libpmpich_la-type_freef.lo CC src/binding/f77/lib_libpmpich_la-get_elementsf.lo CC src/binding/f77/lib_libpmpich_la-packf.lo CC src/binding/f77/lib_libpmpich_la-unpackf.lo CC src/binding/f77/lib_libpmpich_la-pack_sizef.lo CC src/binding/f77/lib_libpmpich_la-barrierf.lo CC src/binding/f77/lib_libpmpich_la-bcastf.lo CC src/binding/f77/lib_libpmpich_la-gatherf.lo CC src/binding/f77/lib_libpmpich_la-gathervf.lo CC src/binding/f77/lib_libpmpich_la-scatterf.lo CC src/binding/f77/lib_libpmpich_la-scattervf.lo CC src/binding/f77/lib_libpmpich_la-allgatherf.lo CC src/binding/f77/lib_libpmpich_la-allgathervf.lo CC src/binding/f77/lib_libpmpich_la-alltoallf.lo CC src/binding/f77/lib_libpmpich_la-alltoallvf.lo gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' **** Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_MACHINE_ENDIAN_H #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_CXXABI_H #define PETSC_HAVE_CXXABI_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_MEMORY_H #define PETSC_HAVE_MEMORY_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBZ #define PETSC_HAVE_LIBZ 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-macosx-gnu-O" #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2013-09-20 15:48:09 -0500" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "2492010b6ebf10eed9da155c21c4e5e815469b33" #endif #ifndef PETSC_DIR #define PETSC_DIR "/Users/markadams/Codes/petsc" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETPWUID #define PETSC_HAVE_GETPWUID 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_SYSCTLBYNAME #define PETSC_HAVE_SYSCTLBYNAME 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_USE_BYTES_FOR_SIZE #define PETSC_USE_BYTES_FOR_SIZE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #endif **** C specific Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-IcSk8v/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make; make install on MPICH: Could not execute "cd /Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106 && /opt/local/bin/gmake -j 7 all": /opt/local/bin/gmake all-recursive gmake[1]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' Making all in src/mpl gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' CC mplstr.lo CC mpltrmem.lo CC mplenv.lo CCLD libmpl.la gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' Making all in src/openpa gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' Making all in src gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' /opt/local/bin/gmake all-am gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/src' Making all in test gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Nothing to be done for `all'. gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa/test' gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[3]: Nothing to be done for `all-am'. gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/openpa' Making all in src/mpi/romio gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/file_c2f.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atalle.lo CC mpi-io/rd_atallb.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap-sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC mpi-io/libpromio_la-close.lo CC mpi-io/libpromio_la-delete.lo CC mpi-io/libpromio_la-file_c2f.lo CC mpi-io/libpromio_la-file_f2c.lo CC mpi-io/libpromio_la-fsync.lo CC mpi-io/libpromio_la-get_amode.lo CC mpi-io/libpromio_la-get_atom.lo CC mpi-io/libpromio_la-get_bytoff.lo CC mpi-io/libpromio_la-get_extent.lo CC mpi-io/libpromio_la-get_group.lo CC mpi-io/libpromio_la-get_info.lo CC mpi-io/libpromio_la-get_posn.lo CC mpi-io/libpromio_la-get_posn_sh.lo CC mpi-io/libpromio_la-get_size.lo CC mpi-io/libpromio_la-get_view.lo CC mpi-io/libpromio_la-iread.lo CC mpi-io/libpromio_la-iread_at.lo CC mpi-io/libpromio_la-iread_sh.lo CC mpi-io/libpromio_la-iwrite.lo CC mpi-io/libpromio_la-iwrite_at.lo CC mpi-io/libpromio_la-iwrite_sh.lo CC mpi-io/libpromio_la-open.lo CC mpi-io/libpromio_la-prealloc.lo CC mpi-io/libpromio_la-rd_atallb.lo CC mpi-io/libpromio_la-rd_atalle.lo CC mpi-io/libpromio_la-read.lo CC mpi-io/libpromio_la-read_all.lo CC mpi-io/libpromio_la-read_allb.lo CC mpi-io/libpromio_la-read_alle.lo CC mpi-io/libpromio_la-read_at.lo CC mpi-io/libpromio_la-read_atall.lo CC mpi-io/libpromio_la-read_ord.lo CC mpi-io/libpromio_la-read_ordb.lo CC mpi-io/libpromio_la-read_orde.lo CC mpi-io/libpromio_la-read_sh.lo CC mpi-io/libpromio_la-register_datarep.lo CC mpi-io/libpromio_la-seek.lo CC mpi-io/libpromio_la-seek_sh.lo CC mpi-io/libpromio_la-set_atom.lo CC mpi-io/libpromio_la-set_info.lo CC mpi-io/libpromio_la-set_size.lo CC mpi-io/libpromio_la-set_view.lo CC mpi-io/libpromio_la-wr_atallb.lo CC mpi-io/libpromio_la-wr_atalle.lo CC mpi-io/libpromio_la-write.lo CC mpi-io/libpromio_la-write_all.lo CC mpi-io/libpromio_la-write_allb.lo CC mpi-io/libpromio_la-write_alle.lo CC mpi-io/libpromio_la-write_at.lo CC mpi-io/libpromio_la-write_atall.lo CC mpi-io/libpromio_la-write_ord.lo CC mpi-io/libpromio_la-write_ordb.lo CC mpi-io/libpromio_la-write_orde.lo CC mpi-io/libpromio_la-write_sh.lo CCLD libromio.la CCLD libpromio.la gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpi/romio' Making all in src/pm/hydra gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making all in ../../mpl gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' gmake[3]: Nothing to be done for `all'. gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/mpl' Making all in tools/topo/hwloc/hwloc gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in src gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-darwin.lo CC topology-x86.lo CCLD libhwloc_embedded.la gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/src' Making all in include gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[4]: Nothing to be done for `all'. gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc/include' gmake[4]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[4]: Nothing to be done for `all-am'. gmake[4]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . gmake[3]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' CC alloc.lo CC args.lo CC dbg.lo CC env.lo CC launch.lo CC others.lo CC signals.lo CC sock.lo CC string.lo CC topo.lo CC topo_hwloc.lo CC bsci_init.lo CC bsci_finalize.lo CC bsci_launch.lo CC bsci_query_node_list.lo CC bsci_query_proxy_id.lo CC bsci_query_native_int.lo CC bsci_wait.lo CC bsci_env.lo CC bscu_wait.lo CC bscu_cb.lo CC external_common.lo CC external_common_launch.lo CC fork_init.lo CC user_init.lo CC manual_init.lo CC rsh_init.lo CC rsh_env.lo CC ssh_init.lo CC ssh.lo CC ssh_env.lo CC ssh_finalize.lo CC slurm_init.lo CC slurm_launch.lo CC slurm_env.lo CC slurm_query_native_int.lo CC slurm_query_node_list.lo CC slurm_query_proxy_id.lo CC ll_init.lo CC ll_launch.lo CC ll_query_native_int.lo CC ll_query_node_list.lo CC ll_query_proxy_id.lo CC ll_env.lo CC lsf_init.lo CC lsf_query_native_int.lo CC lsf_query_node_list.lo CC lsf_env.lo CC sge_init.lo CC sge_query_native_int.lo CC sge_query_node_list.lo CC sge_env.lo CC pbs_init.lo CC pbs_query_native_int.lo CC pbs_query_node_list.lo CC cobalt_init.lo CC cobalt_query_native_int.lo CC cobalt_query_node_list.lo CC persist_init.lo CC persist_launch.lo CC persist_wait.lo CC ckpoint.lo CC demux.lo CC demux_poll.lo CC demux_select.lo CC debugger.lo CC hydt_ftb_dummy.lo CC uiu.lo CC pmiserv_pmi.lo CC pmiserv_pmi_v1.lo CC pmiserv_pmi_v2.lo CC pmiserv_pmci.lo CC pmiserv_cb.lo CC pmiserv_utils.lo CC common.lo CC pmi_v2_common.lo CC hydra_persist-persist_server.o CC hydra_nameserver-hydra_nameserver.o CC hydra_pmi_proxy-pmip.o CC hydra_pmi_proxy-pmip_cb.o CC hydra_pmi_proxy-pmip_utils.o CC hydra_pmi_proxy-pmip_pmi_v1.o CC hydra_pmi_proxy-pmip_pmi_v2.o CC hydra_pmi_proxy-common.o CC hydra_pmi_proxy-pmi_v2_common.o CC mpiexec.o CC utils.o CCLD libhydra.la CCLD libpm.la CCLD hydra_persist CCLD hydra_pmi_proxy CCLD hydra_nameserver CCLD mpiexec.hydra gmake[3]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' gmake[2]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106/src/pm/hydra' Making all in . gmake[2]: Entering directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' CC src/mpi/init/initinfo.lo F77 src/binding/f77/setbotf.lo CC src/binding/f77/lib_libpmpich_la-sendf.lo CC src/binding/f77/lib_libpmpich_la-recvf.lo CC src/binding/f77/lib_libpmpich_la-bsendf.lo CC src/binding/f77/lib_libpmpich_la-get_countf.lo CC src/binding/f77/lib_libpmpich_la-ssendf.lo CC src/binding/f77/lib_libpmpich_la-rsendf.lo CC src/binding/f77/lib_libpmpich_la-bufattachf.lo CC src/binding/f77/lib_libpmpich_la-bufdetachf.lo CC src/binding/f77/lib_libpmpich_la-isendf.lo CC src/binding/f77/lib_libpmpich_la-ibsendf.lo CC src/binding/f77/lib_libpmpich_la-issendf.lo CC src/binding/f77/lib_libpmpich_la-irsendf.lo CC src/binding/f77/lib_libpmpich_la-irecvf.lo CC src/binding/f77/lib_libpmpich_la-waitf.lo CC src/binding/f77/lib_libpmpich_la-testf.lo CC src/binding/f77/lib_libpmpich_la-request_freef.lo CC src/binding/f77/lib_libpmpich_la-waitanyf.lo CC src/binding/f77/lib_libpmpich_la-testanyf.lo CC src/binding/f77/lib_libpmpich_la-waitallf.lo CC src/binding/f77/lib_libpmpich_la-testallf.lo CC src/binding/f77/lib_libpmpich_la-waitsomef.lo CC src/binding/f77/lib_libpmpich_la-testsomef.lo CC src/binding/f77/lib_libpmpich_la-iprobef.lo CC src/binding/f77/lib_libpmpich_la-probef.lo CC src/binding/f77/lib_libpmpich_la-cancelf.lo CC src/binding/f77/lib_libpmpich_la-testcancelf.lo CC src/binding/f77/lib_libpmpich_la-send_initf.lo CC src/binding/f77/lib_libpmpich_la-bsend_initf.lo CC src/binding/f77/lib_libpmpich_la-ssend_initf.lo CC src/binding/f77/lib_libpmpich_la-rsend_initf.lo CC src/binding/f77/lib_libpmpich_la-recv_initf.lo CC src/binding/f77/lib_libpmpich_la-startf.lo CC src/binding/f77/lib_libpmpich_la-startallf.lo CC src/binding/f77/lib_libpmpich_la-sendrecvf.lo CC src/binding/f77/lib_libpmpich_la-sndrcvrplf.lo CC src/binding/f77/lib_libpmpich_la-typecontigf.lo CC src/binding/f77/lib_libpmpich_la-type_vectorf.lo CC src/binding/f77/lib_libpmpich_la-type_hvectorf.lo CC src/binding/f77/lib_libpmpich_la-type_indexedf.lo CC src/binding/f77/lib_libpmpich_la-type_hindexedf.lo CC src/binding/f77/lib_libpmpich_la-type_structf.lo CC src/binding/f77/lib_libpmpich_la-type_extentf.lo CC src/binding/f77/lib_libpmpich_la-type_sizef.lo CC src/binding/f77/lib_libpmpich_la-type_lbf.lo CC src/binding/f77/lib_libpmpich_la-type_ubf.lo CC src/binding/f77/lib_libpmpich_la-type_commitf.lo CC src/binding/f77/lib_libpmpich_la-type_freef.lo CC src/binding/f77/lib_libpmpich_la-get_elementsf.lo CC src/binding/f77/lib_libpmpich_la-packf.lo CC src/binding/f77/lib_libpmpich_la-unpackf.lo CC src/binding/f77/lib_libpmpich_la-pack_sizef.lo CC src/binding/f77/lib_libpmpich_la-barrierf.lo CC src/binding/f77/lib_libpmpich_la-bcastf.lo CC src/binding/f77/lib_libpmpich_la-gatherf.lo CC src/binding/f77/lib_libpmpich_la-gathervf.lo CC src/binding/f77/lib_libpmpich_la-scatterf.lo CC src/binding/f77/lib_libpmpich_la-scattervf.lo CC src/binding/f77/lib_libpmpich_la-allgatherf.lo CC src/binding/f77/lib_libpmpich_la-allgathervf.lo CC src/binding/f77/lib_libpmpich_la-alltoallf.lo CC src/binding/f77/lib_libpmpich_la-alltoallvf.lo gmake[1]: Leaving directory `/Users/markadams/Codes/petsc/externalpackages/mpich-3.0.4-106' mpi-io/mpiu_external32.c: In function 'MPIU_datatype_full_size': mpi-io/mpiu_external32.c:123: warning: unused variable 'extent' adio/common/ad_coll_build_req_new.c: In function 'ADIOI_Build_client_reqs': adio/common/ad_coll_build_req_new.c:905: warning: unused variable 'cb_node_ct' ./utils/args/args.c: In function 'match_arg': ./utils/args/args.c:148: warning: zero-length printf format string ./utils/args/args.c:148: warning: zero-length printf format string ./utils/string/string.c: In function 'HYDU_strsplit': ./utils/string/string.c:92: warning: zero-length printf format string ./utils/string/string.c:92: warning: zero-length printf format string ./tools/topo/hwloc/topo_hwloc.c: In function 'split_count_field': ./tools/topo/hwloc/topo_hwloc.c:219: warning: label 'fn_fail' defined but not used ./tools/bootstrap/external/slurm_query_native_int.c: In function 'HYDT_bscd_slurm_query_native_int': ./tools/bootstrap/external/slurm_query_native_int.c:30: warning: label 'fn_fail' defined but not used ./tools/bootstrap/external/ll_query_native_int.c: In function 'HYDT_bscd_ll_query_native_int': ./tools/bootstrap/external/ll_query_native_int.c:28: warning: label 'fn_fail' defined but not used ./tools/bootstrap/external/ll_query_node_list.c: In function 'process_mfile_count': ./tools/bootstrap/external/ll_query_node_list.c:51: warning: label 'fn_fail' defined but not used ./tools/bootstrap/external/lsf_query_native_int.c: In function 'HYDT_bscd_lsf_query_native_int': ./tools/bootstrap/external/lsf_query_native_int.c:28: warning: label 'fn_fail' defined but not used ./tools/bootstrap/external/sge_query_native_int.c: In function 'HYDT_bscd_sge_query_native_int': ./tools/bootstrap/external/sge_query_native_int.c:30: warning: label 'fn_fail' defined but not used ./tools/bootstrap/external/pbs_query_native_int.c: In function 'HYDT_bscd_pbs_query_native_int': ./tools/bootstrap/external/pbs_query_native_int.c:26: warning: label 'fn_fail' defined but not used ./tools/bootstrap/external/cobalt_query_native_int.c: In function 'HYDT_bscd_cobalt_query_native_int': ./tools/bootstrap/external/cobalt_query_native_int.c:26: warning: label 'fn_fail' defined but not used ./tools/ckpoint/ckpoint.c: In function 'ckpoint_thread': ./tools/ckpoint/ckpoint.c:84: warning: label 'fn_fail' defined but not used ./pm/pmiserv/pmiserv_pmi.c: In function 'HYD_pmcd_pmi_free_publish': ./pm/pmiserv/pmiserv_pmi.c:59: warning: label 'fn_fail' defined but not used ./pm/pmiserv/pmiserv_utils.c: In function 'pmi_process_mapping': ./pm/pmiserv/pmiserv_utils.c:205: warning: label 'create_mapping_key' defined but not used ./pm/pmiserv/pmiserv_utils.c: In function 'HYD_pmcd_pmi_free_pg_scratch': ./pm/pmiserv/pmiserv_utils.c:594: warning: label 'fn_fail' defined but not used ./pm/pmiserv/pmip_cb.c: In function 'parse_exec_params': ./pm/pmiserv/pmip_cb.c:811: warning: null argument where non-null required (argument 1) ./pm/pmiserv/pmip_utils.c: In function 'global_env_fn': ./pm/pmiserv/pmip_utils.c:358: warning: label 'fn_fail' defined but not used ./ui/mpich/utils.c: In function 'help_fn': ./ui/mpich/utils.c:158: warning: zero-length printf format string ./ui/mpich/utils.c:158: warning: zero-length printf format string ./ui/mpich/utils.c: In function 'info_fn': ./ui/mpich/utils.c:1240: warning: zero-length printf format string ./ui/mpich/utils.c:1240: warning: zero-length printf format string gmake[2]: *** write jobserver: Broken pipe. Stop. gmake[2]: *** Waiting for unfinished jobs.... gmake[2]: *** write jobserver: Broken pipe. Stop. gmake[1]: *** [all-recursive] Error 1 gmake: *** [all] Error 2 gmake: INTERNAL: Exiting with 1 jobserver tokens available; should be 7! ******************************************************************************* File "/Users/markadams/Codes/petsc/config/configure.py", line 293, in petsc_configure framework.configure(out = sys.stdout) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 933, in configure child.configure() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 572, in configure self.executeTest(self.configureLibrary) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/base.py", line 115, in executeTest ret = apply(test, args,kargs) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py", line 750, in configureLibrary config.package.Package.configureLibrary(self) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 500, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 233, in generateGuesses d = self.checkDownload(1) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py", line 352, in checkDownload return config.package.Package.checkDownload(self, requireDownload) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 348, in checkDownload return self.getInstallDir() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 188, in getInstallDir return os.path.abspath(self.Install()) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py", line 367, in Install return self.InstallMPICH() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py", line 575, in InstallMPICH raise RuntimeError('Error running make; make install on MPICH: '+str(e))