<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Deep clean worked,<div><br></div><div>Now I get a segv in dmcreatematrix. The string length is crazy. I tried calling this with MPIAIJ and PETSC_NULL, both had crazy 'len' (but slightly different) and segv at the same place.</div><div><br></div><div><div>0x0000000100b112e4 in dmcreatematrix_ (dm=0x7fff5fbff5b0, mat_type=0x101e90f00 "", J=0x7fff5fbff5e0, ierr=0x7fff5fbff59c, len=1606415580) at zdmf.c:40</div><div>40 FIXCHAR(mat_type,len,t);</div><div>(gdb) list</div><div>35 </div><div>36 EXTERN_C_BEGIN</div><div>37 void PETSC_STDCALL dmcreatematrix_(DM *dm,CHAR mat_type PETSC_MIXED_LEN(len),Mat *J,PetscErrorCode *ierr PETSC_END_LEN(len))</div><div>38 {</div><div>39 char *t;</div><div>40 FIXCHAR(mat_type,len,t);</div><div>41 *ierr = DMCreateMatrix(*dm,t,J);</div><div>42 FREECHAR(mat_type,t);</div><div>43 }</div><div>44 EXTERN_C_END</div></div><div><br></div><div><br><div><div>On Jan 25, 2013, at 3:17 PM, Jed Brown <<a href="mailto:jedbrown@mcs.anl.gov">jedbrown@mcs.anl.gov</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr">You must not have done "make allfortranstubs".<div class="gmail_extra"><br><br><div class="gmail_quote">On Fri, Jan 25, 2013 at 2:03 PM, Mark F. Adams <span dir="ltr"><<a href="mailto:mark.adams@columbia.edu" target="_blank">mark.adams@columbia.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word"><div>The DM method is fixed but still no _vecnestgetsubvec_</div><div><br></div><div>
This is what I see in the libs, _veccreatenest_ is there but _vecnestgetsubvec_ is not:</div><div><br></div><div><div> U _VecCreateNest</div><div>00000000000003c0 T _veccreatenest_</div><div>00000000000030e0 S _veccreatenest_.eh</div>
<div>0000000000013210 T _VecCreateNest</div><div>000000000001d968 S _VecCreateNest.eh</div><div> U _VecCreateNest</div><div> U _VecCreateNest</div><div>~/Codes/petsc-dev/arch-macosx-gnu-g/lib>nm *.a | grep -i vecnestgetsubvec</div>
<div><br></div><div>000000000000ec90 T _VecNestGetSubVec</div><div>000000000001d728 S _VecNestGetSubVec.eh</div><div>000000000000ea20 T _VecNestGetSubVec_Nest</div><div>000000000001d6f8 S _VecNestGetSubVec_Nest.eh</div><div>
000000000000f2c0 T _VecNestGetSubVecs</div><div>000000000001d788 S _VecNestGetSubVecs.eh</div><div>000000000000f0b0 T _VecNestGetSubVecs_Nest</div><div>000000000001d758 S _VecNestGetSubVecs_Nest.eh</div><div>000000000000e680 t _VecNestGetSubVecs_Private</div>
<div>000000000001d6c8 s _VecNestGetSubVecs_Private.eh</div></div><div><div class="h5"><div><br></div><div><br></div><br><div><div>On Jan 25, 2013, at 2:49 PM, Jed Brown <<a href="mailto:jedbrown@mcs.anl.gov" target="_blank">jedbrown@mcs.anl.gov</a>> wrote:</div>
<br><blockquote type="cite"><div dir="ltr"><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jan 25, 2013 at 11:13 AM, Jed Brown <span dir="ltr"><<a href="mailto:jedbrown@mcs.anl.gov" target="_blank">jedbrown@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div><div class="gmail_quote">On Fri, Jan 25, 2013 at 11:11 AM, Mark F. Adams <span dir="ltr"><<a href="mailto:mark.adams@columbia.edu" target="_blank">mark.adams@columbia.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
And, when I link I get some missing stuff:<br>
<br>
Undefined symbols for architecture x86_64:<br>
"_dmsetoptionsprefix_", referenced from:<br>
_MAIN__ in petsc_kkt_solver.o<br>
"_matnestgetsubmat_", referenced from:<br>
_formjacobian_ in petsc_kkt_solver.o<br>
"_vecnestgetsubvec_", referenced from:<br>
_formjacobian_ in petsc_kkt_solver.o<br>
_formfunction_ in petsc_kkt_solver.o<br>
<br>
Are these missing fortran wrappers?</blockquote></blockquote></div><br></div>Yeah, those are missing. I'll add them today and let you know.</blockquote></div><br>Pushed</div><div class="gmail_extra"><br></div><div class="gmail_extra">
<a href="https://bitbucket.org/petsc/petsc-dev/commits/59843d687d130ed7b97ee18d8704320150a44f31" target="_blank">https://bitbucket.org/petsc/petsc-dev/commits/59843d687d130ed7b97ee18d8704320150a44f31</a><br></div><div class="gmail_extra">
<a href="https://bitbucket.org/petsc/petsc-dev/commits/5420f5634239d2a06df1e090a0c1b0effe5ba36d" target="_blank">https://bitbucket.org/petsc/petsc-dev/commits/5420f5634239d2a06df1e090a0c1b0effe5ba36d</a><br></div><div class="gmail_extra">
<a href="https://bitbucket.org/petsc/petsc-dev/commits/b800724bd477bca1a8dc8c2193153866285f511f" target="_blank">https://bitbucket.org/petsc/petsc-dev/commits/b800724bd477bca1a8dc8c2193153866285f511f</a><br></div></div>
</blockquote></div><br></div></div></div></blockquote></div><br></div></div>
</blockquote></div><br></div></body></html>