<div dir="ltr">reproduced with fortran enabled, additionally:<div><br></div><div><div>/Users/aron/sandbox/petsc/arch-darwin-c-debug/bin/mpif90 -c -Wall -Wno-unused-variable -g -I/Users/aron/sandbox/petsc/include -I/Users/aron/sandbox/petsc/arch-darwin-c-debug/include -o ex5f.o ex5f.F</div>
<div>Warning: Nonconforming tab character in column 1 of line 2757</div><div>Warning: Nonconforming tab character in column 1 of line 4937</div><div>Warning: Nonconforming tab character in column 1 of line 6914</div><div>
Warning: Nonconforming tab character in column 1 of line 8887</div><div>Warning: Nonconforming tab character in column 1 of line 10901</div><div>/Users/aron/sandbox/petsc/arch-darwin-c-debug/bin/mpif90 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wno-unused-variable -g -o ex5f ex5f.o -L/Users/aron/sandbox/petsc/arch-darwin-c-debug/lib -lpetsc -L/usr/X11R6/lib -lX11 -lpthread -llapack -lblas -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -lmpichf90 -lgfortran -L/usr/local/Cellar/gfortran/4.2.4-5664/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/local/Cellar/gfortran/4.2.4-5664/lib/gcc/i686-apple-darwin10/4.2.1 -L/usr/local/Cellar/gfortran/4.2.4-5664/lib/gcc -L/usr/local/Cellar/gfortran/4.2.4-5664/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -ldl </div>
<div>Undefined symbols:</div><div> "_dmlocaltoglobalbegin_", referenced from:</div><div> _forminitialguess_ in ex5f.o</div><div> "_dmgetlocalvector_", referenced from:</div><div> _forminitialguess_ in ex5f.o</div>
<div> "_matassemblybegin_", referenced from:</div><div> _formjacobianlocal_ in ex5f.o</div><div> "_dmdestroy_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_snessolve_", referenced from:</div>
<div> _MAIN__ in ex5f.o</div><div> "_vecrestorearray_", referenced from:</div><div> _forminitialguess_ in ex5f.o</div><div> "_vecdestroy_", referenced from:</div><div> _MAIN__ in ex5f.o</div>
<div> _MAIN__ in ex5f.o</div><div> "_matsetvalueslocal_", referenced from:</div><div> _formjacobianlocal_ in ex5f.o</div><div> _formjacobianlocal_ in ex5f.o</div><div> "_matassemblyend_", referenced from:</div>
<div> _formjacobianlocal_ in ex5f.o</div><div> "_dmdagetcorners_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_dmdasetlocaljacobian_", referenced from:</div><div> _MAIN__ in ex5f.o</div>
<div> "_petscinitialize_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_dmcreateglobalvector_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_petscfinalize_", referenced from:</div>
<div> _MAIN__ in ex5f.o</div><div> "_snessetdm_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_snessetfromoptions_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div>
"_snescreate_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_snesdestroy_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_dmdacreate2d_", referenced from:</div>
<div> _MAIN__ in ex5f.o</div><div> "_vecduplicate_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_petsclogflops_", referenced from:</div><div> _formfunctionlocal_ in ex5f.o</div>
<div> "_dmdagetghostcorners_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_dmrestorelocalvector_", referenced from:</div><div> _forminitialguess_ in ex5f.o</div><div> "_snesgetiterationnumber_", referenced from:</div>
<div> _MAIN__ in ex5f.o</div><div> "_dmlocaltoglobalend_", referenced from:</div><div> _forminitialguess_ in ex5f.o</div><div> "_dmdasetlocalfunction_", referenced from:</div><div> _MAIN__ in ex5f.o</div>
<div> "_dmdagetinfo_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_petscoptionsgetreal_", referenced from:</div><div> _MAIN__ in ex5f.o</div><div> "_vecgetarray_", referenced from:</div>
<div> _forminitialguess_ in ex5f.o</div><div>ld: symbol(s) not found</div><div>collect2: ld returned 1 exit status</div><div>make[3]: [ex5f] Error 1 (ignored)</div><br><div class="gmail_quote">On Sun, Oct 7, 2012 at 7:29 PM, Satish Balay <span dir="ltr"><<a href="mailto:petsc-maint@mcs.anl.gov" target="_blank">petsc-maint@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hm - nightlybuilds use --download-mpich=1 - but I don't see this error<br>
on OSX build.<br>
<br>
wrt binsection - the following worked - the last time I tried.<br>
<br>
<a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#bisect" target="_blank">http://www.mcs.anl.gov/petsc/documentation/faq.html#bisect</a><br>
<span class="HOEnZb"><font color="#888888"><br>
Satish<br>
</font></span><div class="HOEnZb"><div class="h5"><br>
On Sun, 7 Oct 2012, Aron Ahmadia wrote:<br>
<br>
> reproduced with --download-mpich=1<br>
><br>
> how the heck do you guys bisect with two independent repos?<br>
><br>
> A<br>
><br>
> On Sun, Oct 7, 2012 at 6:28 PM, Aron Ahmadia <<a href="mailto:aron@ahmadia.net">aron@ahmadia.net</a>> wrote:<br>
><br>
> > I'm able to reproduce with shared libraries enabled and disabled. Your<br>
> > nightly logs aren't indicating failures as far as I can tell.<br>
> ><br>
> > changeset: 24541:729963bc657c<br>
> > tag: tip<br>
> > user: Stefano Zampini <<a href="mailto:stefano.zampini@gmail.com">stefano.zampini@gmail.com</a>><br>
> > date: Sat Oct 06 13:39:31 2012 +0200<br>
> > summary: Rearranged some deallocations when building FETIDP mat.<br>
> > (same failure with 2 processes), I'm looking into whether any of the<br>
> > specific configure options (python/shared libraries) triggers the failure.<br>
> ><br>
> > ~/s/petsc ❯❯❯ make PETSC_DIR=/Users/aron/sandbox/petsc<br>
> > PETSC_ARCH=arch-darwin-c-debug test<br>
> > Running test examples to verify correct installation<br>
> > Using PETSC_DIR=/Users/aron/sandbox/petsc and<br>
> > PETSC_ARCH=arch-darwin-c-debug<br>
> > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI<br>
> > process<br>
> > See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" target="_blank">http://www.mcs.anl.gov/petsc/documentation/faq.html</a><br>
> > [peregrine:31992] *** Process received signal ***<br>
> > [peregrine:31992] Signal: Segmentation fault (11)<br>
> > [peregrine:31992] Signal code: Address not mapped (1)<br>
> > [peregrine:31992] Failing at address: 0x440000b0<br>
> > [peregrine:31992] [ 0] 2 libSystem.B.dylib<br>
> > 0x00007fff846391ba _sigtramp + 26<br>
> > [peregrine:31992] [ 1] 3 ???<br>
> > 0x0000000101434fd0 0x0 + 4316155856<br>
> > [peregrine:31992] [ 2] 4 libpetsc.dylib<br>
> > 0x0000000100118456 PetscInitialize + 1424<br>
> > [peregrine:31992] [ 3] 5 ex19<br>
> > 0x000000010000110f main + 43<br>
> > [peregrine:31992] [ 4] 6 ex19<br>
> > 0x00000001000010dc start + 52<br>
> > [peregrine:31992] [ 5] 7 ???<br>
> > 0x0000000000000007 0x0 + 7<br>
> > [peregrine:31992] *** End of error message ***<br>
> > mpiexec noticed that job rank 0 with PID 31992 on node peregrine.local<br>
> > exited on signal 11 (Segmentation fault).<br>
> ><br>
><br>
><br>
</div></div></blockquote></div><br></div></div>