[12]PETSC ERROR: PetscMallocValidate: error detected at PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [12]PETSC ERROR: Memory [id=0(16)] at address 0x974b1a0 is corrupted (probably write past end of array) [12]PETSC ERROR: Memory originally allocated in PetscStrallocpy() line 187 in src/sys/utils/str.c [12]PETSC ERROR: --------------------- Error Message ------------------------------------ [12]PETSC ERROR: Memory corruption! [12]PETSC ERROR: ! [12]PETSC ERROR: [28]PETSC ERROR: PetscMallocValidate: error detected at PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [28]PETSC ERROR: Memory at address 0x1a07f773 is corrupted [28]PETSC ERROR: Probably write past beginning or end of array [28]PETSC ERROR: Last intact block allocated in PetscStrallocpy() line 187 in src/sys/utils/str.c [28]PETSC ERROR: --------------------- Error Message ------------------------------------ [28]PETSC ERROR: Memory corruption! [28]PETSC ERROR: ! [28]PETSC ERROR: ------------------------------------------------------------------------ [28]PETSC ERROR: Petsc Development HG revision: f157be1ec5f4b86e15fea617f3e0570bb9821407 HG Date: Tue Sep 25 09:09:02 2012 +0200 [28]PETSC ERROR: See docs/changes/index.html for recent updates. [28]PETSC ERROR: [84]PETSC ERROR: PetscMallocValidate: error detected at PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [84]PETSC ERROR: Memory at address 0x10210b70 is corrupted [84]PETSC ERROR: Probably write past beginning or end of array [84]PETSC ERROR: Last intact block allocated in PetscStrallocpy() line 187 in src/sys/utils/str.c [84]PETSC ERROR: --------------------- Error Message ------------------------------------ [84]PETSC ERROR: Memory corruption! [84]PETSC ERROR: ! [84]PETSC ERROR: ------------------------------------------------------------------------ [84]PETSC ERROR: Petsc Development HG revision: f157be1ec5f4b86e15fea617f3e0570bb9821407 HG Date: Tue Sep 25 09:09:02 2012 +0200 [14]PETSC ERROR: PetscMallocValidate: error detected at PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [14]PETSC ERROR: Memory at address 0x14d43c10 is corrupted [14]PETSC ERROR: Probably write past beginning or end of array [14]PETSC ERROR: Last intact block allocated in PetscFListAdd() line 241 in src/sys/dll/reg.c [14]PETSC ERROR: --------------------- Error Message ------------------------------------ [14]PETSC ERROR: Memory corruption! [14]PETSC ERROR: ! [14]PETSC ERROR: ------------------------------------------------------------------------ [14]PETSC ERROR: Petsc Development HG revision: f157be1ec5f4b86e15fea617f3e0570bb9821407 HG Date: Tue Sep 25 09:09:02 2012 +0200 [14]PETSC ERROR: See docs/changes/index.html for recent updates. [14]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [14]PETSC ERROR: See docs/index.html for manual pages. [14]PETSC ERROR: ------------------------------------------------------------------------ [14]PETSC ERROR: /nfsscratch/Users/jmousel/OCTOPUS/OCTOPUS128/OCTOPUS_exe on a intel-deb named compute-1-15.local by jmousel Tue Sep 25 11:45:55 2012 [14]PETSC ERROR: Libraries linked from /Users/jmousel/SOFT/petsc-dev/intel-debug/lib [14]PETSC ERROR: Configure run at Tue Sep 25 11:07:47 2012 [14]PETSC ERROR: Configure options --download-blacs=1 --download-cmake=1 --download-hypre=1 --download-metis=1 --download-ml=1 --download-parmetis=1 --download-scalapack=1 --with-blas-lapack-dir=/opt/intel/mkl/10.2.5.035/lib/em64t --with-mpi-dir=/opt/openmpi/1.4.3/intel PETSC_ARCH=intel-debug [14]PETSC ERROR: ------------------------------------------------------------------------ [14]PETSC ERROR: PetscMallocValidate() line 139 in src/sys/memory/mtr.c [14]PETSC ERROR: PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [14]PETSC ERROR: MatCreate_SeqAIJ_Inode() line 97 in src/mat/impls/aij/seq/inode2.c [14]PETSC ERROR: MatCreate_SeqAIJ() line 4014 in src/mat/impls/aij/seq/aij.c [14]PETSC ERROR: MatSetType() line 74 in src/mat/interface/matreg.c [14]PETSC ERROR: MatMPIAIJSetPreallocation_MPIAIJ() line 3260 in src/mat/impls/aij/mpi/mpiaij.c See docs/faq.html for hints about trouble shooting. [28]PETSC ERROR: See docs/index.html for manual pages. [28]PETSC ERROR: ------------------------------------------------------------------------ [28]PETSC ERROR: /nfsscratch/Users/jmousel/OCTOPUS/OCTOPUS128/OCTOPUS_exe on a intel-deb named compute-1-17.local by jmousel Tue Sep 25 11:45:55 2012 [28]PETSC ERROR: Libraries linked from /Users/jmousel/SOFT/petsc-dev/intel-debug/lib [28]PETSC ERROR: Configure run at Tue Sep 25 11:07:47 2012 [28]PETSC ERROR: Configure options --download-blacs=1 --download-cmake=1 --download-hypre=1 --download-metis=1 --download-ml=1 --download-parmetis=1 --download-scalapack=1 --with-blas-lapack-dir=/opt/intel/mkl/10.2.5.035/lib/em64t --with-mpi-dir=/opt/openmpi/1.4.3/intel PETSC_ARCH=intel-debug [28]PETSC ERROR: ------------------------------------------------------------------------ [28]PETSC ERROR: PetscMallocValidate() line 139 in src/sys/memory/mtr.c [28]PETSC ERROR: PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [28]PETSC ERROR: MatCreate_SeqAIJ_Inode() line 97 in src/mat/impls/aij/seq/inode2.c [28]PETSC ERROR: MatCreate_SeqAIJ() line 4014 in src/mat/impls/aij/seq/aij.c [28]PETSC ERROR: MatSetType() line 74 in src/mat/interface/matreg.c [28]PETSC ERROR: MatMPIAIJSetPreallocation_MPIAIJ() line 3260 in src/mat/impls/aij/mpi/mpiaij.c [28]PETSC ERROR: MatMPIAIJSetPreallocation() line 3984 in src/mat/impls/aij/mpi/mpiaij.c [28]PETSC ERROR: MatCreateAIJ() line 4244 in src/mat/impls/aij/mpi/mpiaij.c [84]PETSC ERROR: See docs/changes/index.html for recent updates. [84]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [84]PETSC ERROR: See docs/index.html for manual pages. [84]PETSC ERROR: ------------------------------------------------------------------------ [84]PETSC ERROR: /nfsscratch/Users/jmousel/OCTOPUS/OCTOPUS128/OCTOPUS_exe on a intel-deb named compute-3-48.local by jmousel Tue Sep 25 11:45:55 2012 [84]PETSC ERROR: Libraries linked from /Users/jmousel/SOFT/petsc-dev/intel-debug/lib [84]PETSC ERROR: Configure run at Tue Sep 25 11:07:47 2012 [84]PETSC ERROR: Configure options --download-blacs=1 --download-cmake=1 --download-hypre=1 --download-metis=1 --download-ml=1 --download-parmetis=1 --download-scalapack=1 --with-blas-lapack-dir=/opt/intel/mkl/10.2.5.035/lib/em64t --with-mpi-dir=/opt/openmpi/1.4.3/intel PETSC_ARCH=intel-debug [84]PETSC ERROR: ------------------------------------------------------------------------ [84]PETSC ERROR: PetscMallocValidate() line 139 in src/sys/memory/mtr.c [84]PETSC ERROR: PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [84]PETSC ERROR: MatCreate_SeqAIJ_Inode() line 97 in src/mat/impls/aij/seq/inode2.c [84]PETSC ERROR: MatCreate_SeqAIJ() line 4014 in src/mat/impls/aij/seq/aij.c [84]PETSC ERROR: MatSetType() line 74 in src/mat/interface/matreg.c [84]PETSC ERROR: MatMPIAIJSetPreallocation_MPIAIJ() line 3260 in src/mat/impls/aij/mpi/mpiaij.c [84]PETSC ERROR: MatMPIAIJSetPreallocation() line 3984 in src/mat/impls/aij/mpi/mpiaij.c [84]PETSC ERROR: MatCreateAIJ() line 4244 in src/mat/impls/aij/mpi/mpiaij.c ------------------------------------------------------------------------ [12]PETSC ERROR: Petsc Development HG revision: f157be1ec5f4b86e15fea617f3e0570bb9821407 HG Date: Tue Sep 25 09:09:02 2012 +0200 [12]PETSC ERROR: See docs/changes/index.html for recent updates. [12]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [12]PETSC ERROR: See docs/index.html for manual pages. [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: /nfsscratch/Users/jmousel/OCTOPUS/OCTOPUS128/OCTOPUS_exe on a intel-deb named compute-1-15.local by jmousel Tue Sep 25 11:45:55 2012 [12]PETSC ERROR: Libraries linked from /Users/jmousel/SOFT/petsc-dev/intel-debug/lib [12]PETSC ERROR: Configure run at Tue Sep 25 11:07:47 2012 [12]PETSC ERROR: Configure options --download-blacs=1 --download-cmake=1 --download-hypre=1 --download-metis=1 --download-ml=1 --download-parmetis=1 --download-scalapack=1 --with-blas-lapack-dir=/opt/intel/mkl/10.2.5.035/lib/em64t --with-mpi-dir=/opt/openmpi/1.4.3/intel PETSC_ARCH=intel-debug [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: PetscMallocValidate() line 151 in src/sys/memory/mtr.c [12]PETSC ERROR: PetscOptionsEnd_Private() line 475 in src/sys/objects/aoptions.c [12]PETSC ERROR: MatCreate_SeqAIJ_Inode() line 97 in src/mat/impls/aij/seq/inode2.c [12]PETSC ERROR: MatCreate_SeqAIJ() line 4014 in src/mat/impls/aij/seq/aij.c [12]PETSC ERROR: MatSetType() line 74 in src/mat/interface/matreg.c [12]PETSC ERROR: MatMPIAIJSetPreallocation_MPIAIJ() line 3260 in src/mat/impls/aij/mpi/mpiaij.c [12]PETSC ERROR: MatMPIAIJSetPreallocation() line 3984 in src/mat/impls/aij/mpi/mpiaij.c [12]PETSC ERROR: MatCreateAIJ() line 4244 in src/mat/impls/aij/mpi/mpiaij.c [14]PETSC ERROR: MatMPIAIJSetPreallocation() line 3984 in src/mat/impls/aij/mpi/mpiaij.c [14]PETSC ERROR: MatCreateAIJ() line 4244 in src/mat/impls/aij/mpi/mpiaij.c [109]PETSC ERROR: -------------------------------------------------------------------------- mpirun noticed that process rank 109 with PID 21027 on node compute-3-73.local exited on signal 11 (Segmentation fault). --------------------------------------------------------------------------