<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">That would make sense...<div>I think that the external packages were compiled with debugging=1, but petsc-dev with debugging=0. I am rebuilding and testing now.</div><div><br></div><div>Thanks a lot,</div><div><br></div><div>Blaise</div><div><br><div><div>On Jun 28, 2011, at 12:10 PM, Matthew Knepley wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">This usually comes from mixing something debug with something optimized. 'petscstack' is only defined for debug builds.<div><br></div><div> Matt<br><br><div class="gmail_quote">On Tue, Jun 28, 2011 at 4:17 AM, Blaise Bourdin <span dir="ltr"><<a href="mailto:bourdin@lsu.edu">bourdin@lsu.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Hi,<br>
<br>
On a freshly pulled / reconfigured / rebuild version of petsc-dev, I get the following link error whenever I try to compile any example:<br>
<br>
/share/apps/mvapich2-1.6-ib-intel11.1/bin/mpicxx -lstdc++ -wd1572 -O3 -axSSE4.2 -Kc++ -o ex10 ex10.o -Wl,-rpath,/share/apps/petsc-dev/Linux-intel11.1-mef90-O/lib -L/share/apps/petsc-dev/Linux-intel11.1-mef90-O/lib -lpetsc -lX11 -Wl,-rpath,/share/apps/petsc-dev/Linux-intel11.1-mef90-O/lib -lchaco -lpromfei -lprometheus -lparmetis -lmetis -lHYPRE -lml -Wl,-rpath,/share/apps/intel/Compiler/11.1/075/mkl -L/share/apps/intel/Compiler/11.1/075/mkl -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -Wl,-rpath,/share/apps/exodusii-4.81-intel11.1/lib -L/share/apps/exodusii-4.81-intel11.1/lib -lexoIIv2for -lexoIIv2c -Wl,-rpath,/share/apps/netcdf-4.1.1-intel11.1/lib -L/share/apps/netcdf-4.1.1-intel11.1/lib -lnetcdf_c++ -lnetcdf -lhdf5_fortran -lhdf5 -lz -lstdc++ -ldl -Wl,-rpath,/share/apps/mvapich2-1.6-ib-intel11.1/lib -L/share/apps/mvapich2-1.6-ib-intel11.1/lib -lmpich -lopa -llimic2 -lpthread -lrdmacm -libverbs -libumad -lrt -Wl,-rpath,/share/apps/intel/Compiler/11.1/075/mkl/lib/em64t -L/share/apps/intel/Compiler/11.1/075/mkl/lib/em64t -Wl,-rpath,/share/apps/intel/Compiler/11.1/075/lib/intel64 -L/share/apps/intel/Compiler/11.1/075/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -lmpichf90 -lifport -lifcore -lm -lm -lmpichcxx -lstdc++ -ldl -lmpich -lopa -llimic2 -lpthread -lrdmacm -libverbs -libumad -lrt -limf -lsvml -lipgo -ldecimal -lgcc_s -lirc -lirc_s -ldl<br>
/share/apps/petsc-dev/Linux-intel11.1-mef90-O/lib/libpetsc.so: undefined reference to `petscstack'<br>
make: [ex10] Error 1 (ignored)<br>
/bin/rm -f ex10.o<br>
<br>
Has anybody seen this? I've looked at recent changelogs but could not find anything related.<br>
<br>
Blaise<br>
<font color="#888888"><br>
--<br>
Department of Mathematics and Center for Computation & Technology<br>
Louisiana State University, Baton Rouge, LA 70803, USA<br>
Tel. <a href="tel:%2B1%20%28225%29%20578%201612" value="+12255781612">+1 (225) 578 1612</a>, Fax <a href="tel:%2B1%20%28225%29%20578%204276" value="+12255784276">+1 (225) 578 4276</a> <a href="http://www.math.lsu.edu/~bourdin" target="_blank">http://www.math.lsu.edu/~bourdin</a><br>
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</font></blockquote></div><br><br clear="all"><br>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener<br>
</div>
</blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">-- </div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Department of Mathematics and Center for Computation & Technology</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Louisiana State University, Baton Rouge, LA 70803, USA</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Tel. +1 (225) 578 1612, Fax +1 (225) 578 4276 <a href="http://www.math.lsu.edu/~bourdin">http://www.math.lsu.edu/~bourdin</a></div><div><br class="khtml-block-placeholder"></div><div><br class="khtml-block-placeholder"></div><br class="Apple-interchange-newline"></div></span></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
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