WARNING: Card (MODE) not found in input file. "structured_grid_type" set to default value. pflotran card:: CHEMISTRY pflotran card:: GRID pflotran card:: LINEAR_SOLVER pflotran card:: LINEAR_SOLVER pflotran card:: NEWTON_SOLVER pflotran card:: UNIFORM_VELOCITY pflotran card:: FLUID_PROPERTY pflotran card:: MATERIAL_PROPERTY pflotran card:: SATURATION_FUNCTION pflotran card:: OUTPUT pflotran card:: TIME pflotran card:: REGION all pflotran card:: REGION west pflotran card:: REGION east pflotran card:: OBSERVATION pflotran card:: TRANSPORT_CONDITION west pflotran card:: TRANSPORT_CONDITION initial pflotran card:: CONSTRAINT west Constraint Species: Tracer pflotran card:: CONSTRAINT initial Constraint Species: Tracer pflotran card:: INITIAL_CONDITION "Initial Condition name" set to default value. pflotran card:: BOUNDARY_CONDITION "Boundary Condition name" set to default value. pflotran card:: BOUNDARY_CONDITION "Boundary Condition name" set to default value. pflotran card:: STRATA ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Requested processors and decomposition = 1, npx,y,z= -1 -1 -1 Actual decomposition: npx,y,z= 1 1 1 Beginning setup of TRAN SNES Solver: bcgs Preconditioner: none Finished setting up TRAN SNES ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Setting up TRAN Realization Finished setting up TRAN Realization WARNING: Waypoint at time: 6.3072E+07 is beyond the end of simulation Transport Stepper: max steps: 999999 max const cumulative_time_steps: 5 max cuts: 16 Transport Newton Solver: atol: 1.0000E-50 rtol: 1.0000E-08 stol: 1.0000E-08 dtol: -2.0000E+00 inftolres: 1.0000E-50 inftolupd: 1.0000E-50 maxit: 50 maxf: 10000 matrix type:aij precond. matrix type:aij inexact newton: off print convergence: on print detailed convergence: off check infinity norm: on force at least 1 iteration: on Transport Linear Solver solver: bcgs precond: none atol: 1.0000E-50 rtol: 1.0000E-05 dtol: 1.0000E+04 maxit: 10000 Default HDF5 method is used in Initialization Finished Initialization --> write tecplot output file: pflotran-000.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 3.51E-07 pnrm: 8.94E-01 inrmr: 1.70E-07 inrmu: 7.31E-01 rsn: 0 2 fnrm: 1.14E-12 pnrm: 3.88E-05 inrmr: 3.48E-13 inrmu: 1.43E-05 rsn: rtol TRAN 1 Time= 1.0000E-06 Dt= 1.0000E-06 [y] snes_conv_reason: 3 newton = 2 [ 2] linear = 24 [ 24] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 24 / 2 --> SNES Residual: 1.143931E-12 1.143931E-15 3.483279E-13 --> max chng: dcmx= 7.3139E-01 dc/dt= 2.3192E-02 [mol/s] == TRANSPORT =============================================== 1 fnrm: 4.70E-10 pnrm: 3.38E-01 inrmr: 6.99E-11 inrmu: 5.40E-02 rsn: 0 2 fnrm: 3.83E-15 pnrm: 2.11E-06 inrmr: 4.37E-16 inrmu: 2.89E-07 rsn: rtol TRAN 11 Time= 1.9226E-04 Dt= 3.8452E-05 [y] snes_conv_reason: 3 newton = 2 [ 22] linear = 126 [ 955] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 126 / 2 --> SNES Residual: 3.825343E-15 3.825343E-18 4.368556E-16 --> max chng: dcmx= 5.4010E-02 dc/dt= 4.4540E-05 [mol/s] == TRANSPORT =============================================== 1 fnrm: 1.26E-10 pnrm: 5.90E-01 inrmr: 9.38E-12 inrmu: 5.35E-02 rsn: 0 2 fnrm: 1.24E-15 pnrm: 4.17E-06 inrmr: 7.80E-17 inrmu: 3.41E-07 rsn: rtol TRAN 21 Time= 1.7906E-03 Dt= 3.5811E-04 [y] snes_conv_reason: 3 newton = 2 [ 42] linear = 368 [ 3290] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 368 / 2 --> SNES Residual: 1.242217E-15 1.242217E-18 7.797404E-17 --> max chng: dcmx= 5.3466E-02 dc/dt= 4.7343E-06 [mol/s] == TRANSPORT =============================================== 1 fnrm: 2.96E-11 pnrm: 1.07E+00 inrmr: 1.76E-12 inrmu: 5.51E-02 rsn: 0 2 fnrm: 2.54E-16 pnrm: 3.92E-06 inrmr: 2.15E-17 inrmu: 2.12E-07 rsn: rtol TRAN 31 Time= 1.6676E-02 Dt= 3.3352E-03 [y] snes_conv_reason: 3 newton = 2 [ 62] linear = 935 [ 10355] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 935 / 2 --> SNES Residual: 2.539007E-16 2.539007E-19 2.147567E-17 --> max chng: dcmx= 5.5105E-02 dc/dt= 5.2392E-07 [mol/s] == TRANSPORT =============================================== 1 fnrm: 2.14E-12 pnrm: 1.08E+00 inrmr: 1.24E-13 inrmu: 4.82E-02 rsn: 0 2 fnrm: 1.20E-16 pnrm: 1.34E-06 inrmr: 1.37E-17 inrmu: 6.95E-08 rsn: rtol TRAN 41 Time= 1.0071E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 82] linear = 764 [ 19931] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 764 / 2 --> SNES Residual: 1.197185E-16 1.197185E-19 1.372860E-17 --> max chng: dcmx= 4.8202E-02 dc/dt= 1.5285E-07 [mol/s] == TRANSPORT =============================================== 1 fnrm: 1.88E-12 pnrm: 4.62E-01 inrmr: 1.91E-13 inrmu: 2.10E-02 rsn: 0 2 fnrm: 1.41E-16 pnrm: 3.80E-07 inrmr: 1.46E-17 inrmu: 1.73E-08 rsn: rtol TRAN 51 Time= 2.0071E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 102] linear = 604 [ 27236] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 604 / 2 --> SNES Residual: 1.410552E-16 1.410552E-19 1.464933E-17 --> max chng: dcmx= 2.0984E-02 dc/dt= 6.6539E-08 [mol/s] --> write tecplot output file: pflotran-001.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 4.53E-13 pnrm: 1.98E-01 inrmr: 4.38E-14 inrmu: 8.99E-03 rsn: 0 2 fnrm: 1.40E-16 pnrm: 2.64E-07 inrmr: 1.56E-17 inrmu: 1.20E-08 rsn: rtol TRAN 61 Time= 3.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 122] linear = 760 [ 34096] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 760 / 2 --> SNES Residual: 1.401602E-16 1.401602E-19 1.558731E-17 --> max chng: dcmx= 8.9937E-03 dc/dt= 2.8519E-08 [mol/s] == TRANSPORT =============================================== 1 fnrm: 3.46E-13 pnrm: 8.44E-02 inrmr: 3.77E-14 inrmu: 3.83E-03 rsn: 0 2 fnrm: 1.51E-16 pnrm: 1.18E-09 inrmr: 1.64E-17 inrmu: 5.44E-11 rsn: rtol TRAN 71 Time= 4.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 142] linear = 497 [ 39459] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 497 / 2 --> SNES Residual: 1.506301E-16 1.506301E-19 1.640142E-17 --> max chng: dcmx= 3.8314E-03 dc/dt= 1.2149E-08 [mol/s] == TRANSPORT =============================================== 1 fnrm: 9.23E-14 pnrm: 3.60E-02 inrmr: 1.05E-14 inrmu: 1.63E-03 rsn: 0 2 fnrm: 1.50E-16 pnrm: 9.48E-12 inrmr: 1.68E-17 inrmu: 1.06E-12 rsn: rtol TRAN 81 Time= 5.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 162] linear = 297 [ 42990] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 297 / 2 --> SNES Residual: 1.497924E-16 1.497924E-19 1.684156E-17 --> max chng: dcmx= 1.6322E-03 dc/dt= 5.1757E-09 [mol/s] --> write tecplot output file: pflotran-002.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 2.02E-14 pnrm: 1.53E-02 inrmr: 1.99E-15 inrmu: 6.95E-04 rsn: 0 2 fnrm: 1.53E-16 pnrm: 4.70E-12 inrmr: 1.42E-17 inrmu: 4.49E-13 rsn: stol TRAN 91 Time= 6.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 182] linear = 232 [ 45073] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 232 / 2 --> SNES Residual: 1.531183E-16 1.531183E-19 1.422592E-17 --> max chng: dcmx= 6.9534E-04 dc/dt= 2.2049E-09 [mol/s] == TRANSPORT =============================================== ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- ../../src/pflotran/pflotran on a arch-linu named opt2377.ten.osc.edu with 1 processor, by osu6070 Fri Apr 1 15:58:48 2011 Using Petsc Development HG revision: unknown HG Date: unknown Max Max/Min Avg Total Time (sec): 3.434e+00 1.00000 3.434e+00 Objects: 5.300e+01 1.00000 5.300e+01 Flops: 1.729e+09 1.00000 1.729e+09 1.729e+09 Flops/sec: 5.036e+08 1.00000 5.036e+08 5.036e+08 MPI Messages: 0.000e+00 0.00000 0.000e+00 0.000e+00 MPI Message Lengths: 0.000e+00 0.00000 0.000e+00 0.000e+00 MPI Reductions: 5.418e+04 1.00000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 0: Main Stage: 1.8830e-03 0.1% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 1: Init Stage: 1.0240e-02 0.3% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 2.400e+01 0.0% 2: Time Step Stage: 5.3270e-02 1.6% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 4: Transport Stage: 3.2463e+00 94.5% 1.7291e+09 100.0% 0.000e+00 0.0% 0.000e+00 0.0% 5.412e+04 99.9% 5: Output Stage: 1.2196e-01 3.6% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flops: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent Avg. len: average message length Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flops in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage --- Event Stage 1: Init Stage Init 1 1.0 9.8250e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.4e+01 0 0 0 0 0 96 0 0 0100 0 Init,Setup 1 1.0 8.2517e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 8 0 0 0 0 0 TranCondRead 2 1.0 6.0081e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 TranConstraintRd 2 1.0 5.5075e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 RTAuxVars 2 1.0 7.8082e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 8 0 0 0 0 0 VecMin 1 1.0 5.9605e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecCopy 13 1.0 2.4319e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 5 1.0 3.8147e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecScatterBegin 5 1.0 8.1062e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyBegin 1 1.0 0.0000e+00 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyEnd 1 1.0 1.9073e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 2: Time Step Stage RTAuxVars 131 1.0 5.0750e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 95 0 0 0 0 0 VecCopy 131 1.0 1.5616e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecScatterBegin 131 1.0 1.6403e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 3: Unknown --- Event Stage 4: Transport Stage RTResidual 393 1.0 2.4882e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 8 0 0 0 0 0 RTJacobian 262 1.0 2.7359e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 8 0 0 0 0 8 0 0 0 0 0 RTJacobianFlux 262 1.0 1.4706e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 5 0 0 0 0 0 RTJacobianFluxBC 262 1.0 2.6655e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTJacobianAccum 262 1.0 5.1854e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 RTJacobianSS 262 1.0 5.0306e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTJacobian1 262 1.0 1.4775e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 5 0 0 0 0 0 RTJacobian2 262 1.0 1.2453e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 RTResReaction 393 1.0 1.3214e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTJacReaction 262 1.0 6.7178e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 RTAuxVars 393 1.0 1.5279e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 5 0 0 0 0 0 RTAuxVarsBC 393 1.0 7.4911e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecDot 107952 1.0 1.9428e-01 1.0 2.16e+08 1.0 0.0e+00 0.0e+00 0.0e+00 6 12 0 0 0 6 12 0 0 0 1111 VecDotNorm2 53976 1.0 1.1453e-01 1.0 2.16e+08 1.0 0.0e+00 0.0e+00 5.4e+04 3 12 0 0100 4 12 0 0100 1885 VecNorm 55286 1.0 4.4832e-01 1.0 1.09e+08 1.0 0.0e+00 0.0e+00 0.0e+00 13 6 0 0 0 14 6 0 0 0 244 VecCopy 109524 1.0 9.8513e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 VecSet 786 1.0 9.7442e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPBYCZ 107952 1.0 3.5084e-01 1.0 4.32e+08 1.0 0.0e+00 0.0e+00 0.0e+00 10 25 0 0 0 11 25 0 0 0 1231 VecWAXPY 108345 1.0 3.4646e-01 1.0 2.16e+08 1.0 0.0e+00 0.0e+00 0.0e+00 10 13 0 0 0 11 13 0 0 0 624 VecScatterBegin 655 1.0 7.3791e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecReduceArith 262 1.0 1.9336e-03 1.0 5.24e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 271 VecReduceComm 131 1.0 5.6505e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SNESSolve 131 1.0 3.1671e+00 1.0 1.73e+09 1.0 0.0e+00 0.0e+00 5.4e+04 92100 0 0100 98100 0 0100 546 SNESLineSearch 262 1.0 1.7080e-01 1.0 1.31e+06 1.0 0.0e+00 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 8 SNESFunctionEval 393 1.0 2.4913e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 8 0 0 0 0 0 SNESJacobianEval 262 1.0 2.7371e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 8 0 0 0 0 8 0 0 0 0 0 KSPSetup 262 1.0 1.3542e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 262 1.0 2.6255e+00 1.0 1.73e+09 1.0 0.0e+00 0.0e+00 5.4e+04 76100 0 0100 81100 0 0100 658 PCSetUp 262 1.0 4.4346e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 PCApply 108214 1.0 1.2971e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 MatMult 107952 1.0 9.3340e-01 1.0 5.39e+08 1.0 0.0e+00 0.0e+00 0.0e+00 27 31 0 0 0 29 31 0 0 0 578 MatAssemblyBegin 262 1.0 5.6267e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyEnd 262 1.0 3.0918e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 262 1.0 8.9216e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 5: Output Stage OutputTecplot 5 1.0 6.0458e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 50 0 0 0 0 0 OutputBrkthuTec 132 1.0 6.1311e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 50 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Distributed Mesh 0 1 12808 0 Vec 0 23 216936 0 Vec Scatter 0 2 1192 0 IS L to G Mapping 0 1 4540 0 SNES 0 1 1192 0 Krylov Solver 0 1 1160 0 Preconditioner 0 1 728 0 Matrix 0 1 54460 0 Viewer 1 0 0 0 --- Event Stage 1: Init Stage Distributed Mesh 2 0 0 0 Vec 19 4 5856 0 Vec Scatter 5 0 0 0 Index Set 10 10 15184 0 IS L to G Mapping 2 0 0 0 SNES 1 0 0 0 Krylov Solver 1 0 0 0 Preconditioner 1 0 0 0 Matrix 1 0 0 0 --- Event Stage 2: Time Step Stage --- Event Stage 3: Unknown --- Event Stage 4: Transport Stage Vec 10 0 0 0 --- Event Stage 5: Output Stage ======================================================================================================================== Average time to get PetscTime(): 9.53674e-08 #PETSc Option Table entries: -log_summary -mat_no_inode -options_left no -pc_type none -pflotranin pflotran.in #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 Configure run at: Fri Apr 1 13:34:02 2011 Configure options: --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1 --with-cudac=nvcc --with-cuda-dir=/usr/local/cuda-3.1/cuda/ --with-thrust=1 --with-cusp=1 --with-cusp-dir=/nfs/06/osu6070/cuda/cusp-library/ --with-thrust-dir=/nfs/06/osu6070/cuda/thrust/ --download-hypre=1 --with-debugging=0 --download-hdf5=1 ----------------------------------------- Libraries compiled on Fri Apr 1 13:34:02 2011 on opt-login01.osc.edu Machine characteristics: Linux-2.6.18-194.11.4.el5-x86_64-with-redhat-5.5-Tikanga Using PETSc directory: /nfs/06/osu6070/petsc_perf/petsc-dev Using PETSc arch: arch-linux2-c-opt ----------------------------------------- Using C compiler: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ${COPTFLAGS} ${CFLAGS} Using Fortran compiler: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpif90 -Wall -Wno-unused-variable -O ${FOPTFLAGS} ${FFLAGS} ----------------------------------------- Using include paths: -I/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/include -I/usr/local/cuda-3.1/cuda/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -I/nfs/06/osu6070/cuda/cusp-library/ -I/nfs/06/osu6070/cuda/thrust/ ----------------------------------------- Using C linker: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpicc Using Fortran linker: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpif90 Using libraries: -Wl,-rpath,/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -L/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsys -lX11 -Wl,-rpath,/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -L/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -lHYPRE -lmpichcxx -lstdc++ -Wl,-rpath,/usr/local/cuda-3.1/cuda/lib64 -L/usr/local/cuda-3.1/cuda/lib64 -lcufft -lcublas -lcudart -lhdf5_fortran -lhdf5 -lz -lflapack -lfblas -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5 -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib/gcc -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib64 -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -lm -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl ----------------------------------------- 1 fnrm: 3.78E-14 pnrm: 6.53E-03 inrmr: 3.99E-15 inrmu: 2.96E-04 rsn: 0 2 fnrm: 1.60E-16 pnrm: 6.39E-12 inrmr: 1.80E-17 inrmu: 8.47E-13 rsn: stol TRAN 101 Time= 7.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 202] linear = 213 [ 46916] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 213 / 2 --> SNES Residual: 1.597401E-16 1.597401E-19 1.796747E-17 --> max chng: dcmx= 2.9622E-04 dc/dt= 9.3931E-10 [mol/s] --> write tecplot output file: pflotran-003.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 1.20E-14 pnrm: 2.78E-03 inrmr: 1.00E-15 inrmu: 1.26E-04 rsn: 0 2 fnrm: 1.90E-16 pnrm: 3.67E-12 inrmr: 1.69E-17 inrmu: 3.93E-13 rsn: stol TRAN 111 Time= 8.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 222] linear = 238 [ 48993] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 238 / 2 --> SNES Residual: 1.902821E-16 1.902821E-19 1.693769E-17 --> max chng: dcmx= 1.2619E-04 dc/dt= 4.0016E-10 [mol/s] == TRANSPORT =============================================== 1 fnrm: 5.59E-15 pnrm: 1.18E-03 inrmr: 5.94E-16 inrmu: 5.38E-05 rsn: 0 2 fnrm: 1.75E-16 pnrm: 2.54E-12 inrmr: 1.70E-17 inrmu: 2.28E-13 rsn: stol TRAN 121 Time= 9.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 242] linear = 273 [ 51290] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 273 / 2 --> SNES Residual: 1.753867E-16 1.753867E-19 1.702780E-17 --> max chng: dcmx= 5.3759E-05 dc/dt= 1.7047E-10 [mol/s] == TRANSPORT =============================================== 1 fnrm: 4.10E-15 pnrm: 5.05E-04 inrmr: 3.57E-16 inrmu: 2.29E-05 rsn: 0 2 fnrm: 1.85E-16 pnrm: 2.29E-12 inrmr: 1.83E-17 inrmu: 2.30E-13 rsn: stol TRAN 131 Time= 1.0000E+00 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 262] linear = 279 [ 53976] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 279 / 2 --> SNES Residual: 1.845916E-16 1.845916E-19 1.829094E-17 --> max chng: dcmx= 2.2902E-05 dc/dt= 7.2622E-11 [mol/s] --> write tecplot output file: pflotran-004.tec 0.01 Seconds to write to Tecplot file(s) TRAN steps = 131 newton = 262 linear = 53976 cuts = 0 TRAN SNES time = 3.2 seconds CPU Time: 3.3500E-04 [sec] 5.5833E-06 [min] 9.3056E-08 [hr] Wall Clock Time: 3.4332E+00 [sec] 5.7220E-02 [min] 9.5367E-04 [hr]