WARNING: Card (MODE) not found in input file. "structured_grid_type" set to default value. pflotran card:: CHEMISTRY pflotran card:: GRID pflotran card:: LINEAR_SOLVER pflotran card:: LINEAR_SOLVER pflotran card:: NEWTON_SOLVER pflotran card:: UNIFORM_VELOCITY pflotran card:: FLUID_PROPERTY pflotran card:: MATERIAL_PROPERTY pflotran card:: SATURATION_FUNCTION pflotran card:: OUTPUT pflotran card:: TIME pflotran card:: REGION all pflotran card:: REGION west pflotran card:: REGION east pflotran card:: OBSERVATION pflotran card:: TRANSPORT_CONDITION west pflotran card:: TRANSPORT_CONDITION initial pflotran card:: CONSTRAINT west Constraint Species: Tracer pflotran card:: CONSTRAINT initial Constraint Species: Tracer pflotran card:: INITIAL_CONDITION "Initial Condition name" set to default value. pflotran card:: BOUNDARY_CONDITION "Boundary Condition name" set to default value. pflotran card:: BOUNDARY_CONDITION "Boundary Condition name" set to default value. pflotran card:: STRATA ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Requested processors and decomposition = 1, npx,y,z= -1 -1 -1 Actual decomposition: npx,y,z= 1 1 1 Beginning setup of TRAN SNES Solver: bcgs Preconditioner: none Finished setting up TRAN SNES ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Setting up TRAN Realization Finished setting up TRAN Realization WARNING: Waypoint at time: 6.3072E+07 is beyond the end of simulation Transport Stepper: max steps: 999999 max const cumulative_time_steps: 5 max cuts: 16 Transport Newton Solver: atol: 1.0000E-50 rtol: 1.0000E-08 stol: 1.0000E-08 dtol: -2.0000E+00 inftolres: 1.0000E-50 inftolupd: 1.0000E-50 maxit: 50 maxf: 10000 matrix type:aij precond. matrix type:aij inexact newton: off print convergence: on print detailed convergence: off check infinity norm: on force at least 1 iteration: on Transport Linear Solver solver: bcgs precond: none atol: 1.0000E-50 rtol: 1.0000E-05 dtol: 1.0000E+04 maxit: 10000 Default HDF5 method is used in Initialization Finished Initialization --> write tecplot output file: pflotran-000.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 3.51E-07 pnrm: 8.94E-01 inrmr: 1.70E-07 inrmu: 7.31E-01 rsn: 0 2 fnrm: 1.14E-12 pnrm: 3.88E-05 inrmr: 3.48E-13 inrmu: 1.43E-05 rsn: rtol TRAN 1 Time= 1.0000E-06 Dt= 1.0000E-06 [y] snes_conv_reason: 3 newton = 2 [ 2] linear = 24 [ 24] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 24 / 2 --> SNES Residual: 1.143931E-12 1.143931E-15 3.483279E-13 --> max chng: dcmx= 7.3139E-01 dc/dt= 2.3192E-02 [mol/s] == TRANSPORT =============================================== 1 fnrm: 8.14E-10 pnrm: 3.38E-01 inrmr: 1.26E-10 inrmu: 5.40E-02 rsn: 0 2 fnrm: 7.06E-15 pnrm: 3.36E-06 inrmr: 9.39E-16 inrmu: 4.96E-07 rsn: rtol TRAN 11 Time= 1.9226E-04 Dt= 3.8452E-05 [y] snes_conv_reason: 3 newton = 2 [ 22] linear = 133 [ 969] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 133 / 2 --> SNES Residual: 7.058015E-15 7.058015E-18 9.388920E-16 --> max chng: dcmx= 5.4010E-02 dc/dt= 4.4540E-05 [mol/s] == TRANSPORT =============================================== 1 fnrm: 1.47E-10 pnrm: 5.90E-01 inrmr: 1.42E-11 inrmu: 5.35E-02 rsn: 0 2 fnrm: 1.46E-15 pnrm: 3.29E-06 inrmr: 1.17E-16 inrmu: 2.85E-07 rsn: rtol TRAN 21 Time= 1.7906E-03 Dt= 3.5811E-04 [y] snes_conv_reason: 3 newton = 2 [ 42] linear = 338 [ 3292] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 338 / 2 --> SNES Residual: 1.462780E-15 1.462780E-18 1.170143E-16 --> max chng: dcmx= 5.3466E-02 dc/dt= 4.7343E-06 [mol/s] == TRANSPORT =============================================== 1 fnrm: 8.14E-12 pnrm: 1.07E+00 inrmr: 4.12E-13 inrmu: 5.51E-02 rsn: 0 2 fnrm: 7.69E-17 pnrm: 8.38E-07 inrmr: 1.38E-17 inrmu: 4.23E-08 rsn: rtol TRAN 31 Time= 1.6676E-02 Dt= 3.3352E-03 [y] snes_conv_reason: 3 newton = 2 [ 62] linear = 1123 [ 10700] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 1123 / 2 --> SNES Residual: 7.688632E-17 7.688632E-20 1.379647E-17 --> max chng: dcmx= 5.5105E-02 dc/dt= 5.2392E-07 [mol/s] == TRANSPORT =============================================== 1 fnrm: 5.69E-12 pnrm: 1.08E+00 inrmr: 3.47E-13 inrmu: 4.82E-02 rsn: 0 2 fnrm: 1.29E-16 pnrm: 2.62E-06 inrmr: 1.41E-17 inrmu: 1.58E-07 rsn: rtol TRAN 41 Time= 1.0071E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 82] linear = 818 [ 20845] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 818 / 2 --> SNES Residual: 1.294457E-16 1.294457E-19 1.413931E-17 --> max chng: dcmx= 4.8202E-02 dc/dt= 1.5285E-07 [mol/s] == TRANSPORT =============================================== 1 fnrm: 1.72E-12 pnrm: 4.62E-01 inrmr: 1.57E-13 inrmu: 2.10E-02 rsn: 0 2 fnrm: 1.36E-16 pnrm: 4.23E-07 inrmr: 1.32E-17 inrmu: 1.92E-08 rsn: rtol TRAN 51 Time= 2.0071E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 102] linear = 780 [ 28138] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 780 / 2 --> SNES Residual: 1.356538E-16 1.356538E-19 1.319879E-17 --> max chng: dcmx= 2.0984E-02 dc/dt= 6.6539E-08 [mol/s] --> write tecplot output file: pflotran-001.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 4.88E-13 pnrm: 1.98E-01 inrmr: 4.75E-14 inrmu: 8.99E-03 rsn: 0 2 fnrm: 1.46E-16 pnrm: 2.64E-07 inrmr: 1.41E-17 inrmu: 1.20E-08 rsn: rtol TRAN 61 Time= 3.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 122] linear = 776 [ 35032] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 776 / 2 --> SNES Residual: 1.460987E-16 1.460987E-19 1.410490E-17 --> max chng: dcmx= 8.9937E-03 dc/dt= 2.8519E-08 [mol/s] == TRANSPORT =============================================== 1 fnrm: 1.00E-13 pnrm: 8.44E-02 inrmr: 1.04E-14 inrmu: 3.83E-03 rsn: 0 2 fnrm: 1.36E-16 pnrm: 1.18E-09 inrmr: 1.30E-17 inrmu: 5.39E-11 rsn: rtol TRAN 71 Time= 4.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 142] linear = 515 [ 40793] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 515 / 2 --> SNES Residual: 1.356517E-16 1.356517E-19 1.299740E-17 --> max chng: dcmx= 3.8314E-03 dc/dt= 1.2149E-08 [mol/s] == TRANSPORT =============================================== 1 fnrm: 2.77E-13 pnrm: 3.60E-02 inrmr: 2.83E-14 inrmu: 1.63E-03 rsn: 0 2 fnrm: 1.47E-16 pnrm: 1.59E-11 inrmr: 1.63E-17 inrmu: 1.66E-12 rsn: rtol TRAN 81 Time= 5.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 3 newton = 2 [ 162] linear = 249 [ 44264] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 249 / 2 --> SNES Residual: 1.473586E-16 1.473586E-19 1.627034E-17 --> max chng: dcmx= 1.6322E-03 dc/dt= 5.1757E-09 [mol/s] --> write tecplot output file: pflotran-002.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 1.06E-13 pnrm: 1.53E-02 inrmr: 1.15E-14 inrmu: 6.95E-04 rsn: 0 2 fnrm: 1.55E-16 pnrm: 9.19E-12 inrmr: 1.48E-17 inrmu: 1.09E-12 rsn: stol TRAN 91 Time= 6.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 182] linear = 199 [ 46113] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 199 / 2 --> SNES Residual: 1.545425E-16 1.545425E-19 1.476368E-17 --> max chng: dcmx= 6.9534E-04 dc/dt= 2.2049E-09 [mol/s] == TRANSPORT =============================================== ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- ../../src/pflotran/pflotran on a arch-linu named opt2377.ten.osc.edu with 1 processor, by osu6070 Fri Apr 1 15:57:51 2011 Using Petsc Development HG revision: unknown HG Date: unknown Max Max/Min Avg Total Time (sec): 2.616e+01 1.00000 2.616e+01 Objects: 5.300e+01 1.00000 5.300e+01 Flops: 1.886e+09 1.00000 1.886e+09 1.886e+09 Flops/sec: 7.208e+07 1.00000 7.208e+07 7.208e+07 MPI Messages: 0.000e+00 0.00000 0.000e+00 0.000e+00 MPI Message Lengths: 0.000e+00 0.00000 0.000e+00 0.000e+00 MPI Reductions: 1.990e+02 1.00000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total counts %Total Avg %Total counts %Total 0: Main Stage: 2.0871e-03 0.0% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 1: Init Stage: 1.9525e+00 7.5% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 2.400e+01 12.1% 2: Time Step Stage: 5.9042e-02 0.2% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 4: Transport Stage: 2.4023e+01 91.8% 1.8857e+09 100.0% 0.000e+00 0.0% 0.000e+00 0.0% 1.410e+02 70.9% 5: Output Stage: 1.2500e-01 0.5% 0.0000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flops: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent Avg. len: average message length Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flops in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flops --- Global --- --- Stage --- Total Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage --- Event Stage 1: Init Stage Init 1 1.0 1.9520e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.4e+01 7 0 0 0 12 100 0 0 0100 0 Init,Setup 1 1.0 1.1098e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 TranCondRead 2 1.0 6.2943e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 TranConstraintRd 2 1.0 5.6028e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTAuxVars 2 1.0 7.7295e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecMin 1 1.0 5.0068e-06 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecCopy 13 1.0 4.9090e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 5 1.0 1.9415e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 99 0 0 0 0 0 VecScatterBegin 5 1.0 1.0204e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecCUSPCopyFrom 8 1.0 2.5201e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyBegin 1 1.0 0.0000e+00 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyEnd 1 1.0 1.8835e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 2: Time Step Stage RTAuxVars 131 1.0 5.1027e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 86 0 0 0 0 0 VecCopy 131 1.0 2.3849e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 4 0 0 0 0 0 VecScatterBegin 131 1.0 3.3560e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 6 0 0 0 0 0 VecCUSPCopyFrom 131 1.0 2.9345e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 5 0 0 0 0 0 --- Event Stage 3: Unknown --- Event Stage 4: Transport Stage RTResidual 393 1.0 2.5780e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 RTJacobian 262 1.0 2.7546e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 RTJacobianFlux 262 1.0 1.4881e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 RTJacobianFluxBC 262 1.0 3.1519e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTJacobianAccum 262 1.0 5.2388e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTJacobianSS 262 1.0 5.5075e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTJacobian1 262 1.0 1.4964e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 RTJacobian2 262 1.0 1.2456e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 1 0 0 0 0 0 RTResReaction 393 1.0 1.3152e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTJacReaction 262 1.0 6.6435e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 RTAuxVars 393 1.0 1.5450e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 RTAuxVarsBC 393 1.0 7.6628e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecDot 110814 1.0 6.3609e+00 1.0 2.22e+08 1.0 0.0e+00 0.0e+00 0.0e+00 24 12 0 0 0 26 12 0 0 0 35 VecDotNorm2 55407 1.0 4.6093e+00 1.0 2.22e+08 1.0 0.0e+00 0.0e+00 0.0e+00 18 12 0 0 0 19 12 0 0 0 48 VecNorm 56717 1.0 3.2295e+00 1.0 1.12e+08 1.0 0.0e+00 0.0e+00 0.0e+00 12 6 0 0 0 13 6 0 0 0 35 VecCopy 112386 1.0 1.8459e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 8 0 0 0 0 0 VecSet 786 1.0 1.6153e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPBYCZ 110814 1.0 2.1841e+00 1.0 4.43e+08 1.0 0.0e+00 0.0e+00 0.0e+00 8 24 0 0 0 9 24 0 0 0 203 VecWAXPY 111207 1.0 2.1133e+00 1.0 2.22e+08 1.0 0.0e+00 0.0e+00 0.0e+00 8 12 0 0 0 9 12 0 0 0 105 VecScatterBegin 655 1.0 7.1864e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecReduceArith 262 1.0 2.0392e-02 1.0 5.24e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 26 VecReduceComm 131 1.0 4.8399e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecCUSPCopyTo 657 1.0 1.4880e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecCUSPCopyFrom 1050 1.0 2.3906e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SNESSolve 131 1.0 2.3938e+01 1.0 1.89e+09 1.0 0.0e+00 0.0e+00 6.0e+00 92100 0 0 3 100100 0 0 4 79 SNESLineSearch 262 1.0 2.2462e-01 1.0 1.31e+06 1.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 6 SNESFunctionEval 393 1.0 2.5816e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 SNESJacobianEval 262 1.0 2.7565e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 KSPSetup 262 1.0 8.3923e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 3 0 0 0 0 4 0 KSPSolve 262 1.0 2.3285e+01 1.0 1.88e+09 1.0 0.0e+00 0.0e+00 6.0e+00 89100 0 0 3 97100 0 0 4 81 PCSetUp 262 1.0 4.4346e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 PCApply 111076 1.0 1.8703e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 8 0 0 0 0 0 MatMult 110814 1.0 2.7851e+00 1.0 6.64e+08 1.0 0.0e+00 0.0e+00 0.0e+00 11 35 0 0 0 12 35 0 0 0 239 MatAssemblyBegin 262 1.0 5.4359e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatAssemblyEnd 262 1.0 3.1745e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 262 1.0 8.3542e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCUSPCopyTo 262 1.0 2.2365e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 --- Event Stage 5: Output Stage OutputTecplot 5 1.0 6.1718e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 49 0 0 0 0 0 OutputBrkthuTec 132 1.0 6.3079e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 50 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Distributed Mesh 0 1 12808 0 Vec 0 23 176936 0 Vec Scatter 0 2 1192 0 IS L to G Mapping 0 1 4540 0 SNES 0 1 1192 0 Krylov Solver 0 1 1160 0 Preconditioner 0 1 728 0 Matrix 0 1 54460 0 Viewer 1 0 0 0 --- Event Stage 1: Init Stage Distributed Mesh 2 0 0 0 Vec 19 4 5856 0 Vec Scatter 5 0 0 0 Index Set 10 10 15184 0 IS L to G Mapping 2 0 0 0 SNES 1 0 0 0 Krylov Solver 1 0 0 0 Preconditioner 1 0 0 0 Matrix 1 0 0 0 --- Event Stage 2: Time Step Stage --- Event Stage 3: Unknown --- Event Stage 4: Transport Stage Vec 10 0 0 0 --- Event Stage 5: Output Stage ======================================================================================================================== Average time to get PetscTime(): 9.53674e-08 #PETSc Option Table entries: -cusp_synchronize -da_mat_type seqaijcusp -da_vec_type seqcusp -log_summary -mat_no_inode -options_left no -pc_type none -pflotranin pflotran.in #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 Configure run at: Fri Apr 1 13:34:02 2011 Configure options: --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1 --with-cudac=nvcc --with-cuda-dir=/usr/local/cuda-3.1/cuda/ --with-thrust=1 --with-cusp=1 --with-cusp-dir=/nfs/06/osu6070/cuda/cusp-library/ --with-thrust-dir=/nfs/06/osu6070/cuda/thrust/ --download-hypre=1 --with-debugging=0 --download-hdf5=1 ----------------------------------------- Libraries compiled on Fri Apr 1 13:34:02 2011 on opt-login01.osc.edu Machine characteristics: Linux-2.6.18-194.11.4.el5-x86_64-with-redhat-5.5-Tikanga Using PETSc directory: /nfs/06/osu6070/petsc_perf/petsc-dev Using PETSc arch: arch-linux2-c-opt ----------------------------------------- Using C compiler: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O ${COPTFLAGS} ${CFLAGS} Using Fortran compiler: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpif90 -Wall -Wno-unused-variable -O ${FOPTFLAGS} ${FFLAGS} ----------------------------------------- Using include paths: -I/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/include -I/usr/local/cuda-3.1/cuda/include -I/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -I/nfs/06/osu6070/cuda/cusp-library/ -I/nfs/06/osu6070/cuda/thrust/ ----------------------------------------- Using C linker: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpicc Using Fortran linker: /nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/bin/mpif90 Using libraries: -Wl,-rpath,/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -L/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsys -lX11 -Wl,-rpath,/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -L/nfs/06/osu6070/petsc_perf/petsc-dev/arch-linux2-c-opt/lib -lHYPRE -lmpichcxx -lstdc++ -Wl,-rpath,/usr/local/cuda-3.1/cuda/lib64 -L/usr/local/cuda-3.1/cuda/lib64 -lcufft -lcublas -lcudart -lhdf5_fortran -lhdf5 -lz -lflapack -lfblas -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5 -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib/gcc -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib64 -L/nfs/06/osu6070/gcc/gcc-4.4.5/lib -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -lmpichf90 -lgfortran -lm -lm -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s -ldl ----------------------------------------- 1 fnrm: 4.01E-14 pnrm: 6.53E-03 inrmr: 4.18E-15 inrmu: 2.96E-04 rsn: 0 2 fnrm: 1.65E-16 pnrm: 6.07E-12 inrmr: 1.63E-17 inrmu: 5.95E-13 rsn: stol TRAN 101 Time= 7.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 202] linear = 200 [ 48051] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 200 / 2 --> SNES Residual: 1.648317E-16 1.648317E-19 1.628940E-17 --> max chng: dcmx= 2.9622E-04 dc/dt= 9.3931E-10 [mol/s] --> write tecplot output file: pflotran-003.tec 0.01 Seconds to write to Tecplot file(s) == TRANSPORT =============================================== 1 fnrm: 4.34E-15 pnrm: 2.78E-03 inrmr: 4.67E-16 inrmu: 1.26E-04 rsn: 0 2 fnrm: 1.74E-16 pnrm: 1.65E-12 inrmr: 1.67E-17 inrmu: 1.46E-13 rsn: stol TRAN 111 Time= 8.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 222] linear = 220 [ 50295] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 220 / 2 --> SNES Residual: 1.739957E-16 1.739957E-19 1.674012E-17 --> max chng: dcmx= 1.2619E-04 dc/dt= 4.0016E-10 [mol/s] == TRANSPORT =============================================== 1 fnrm: 9.05E-15 pnrm: 1.18E-03 inrmr: 9.00E-16 inrmu: 5.38E-05 rsn: 0 2 fnrm: 1.74E-16 pnrm: 2.60E-12 inrmr: 1.73E-17 inrmu: 2.60E-13 rsn: stol TRAN 121 Time= 9.0000E-01 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 242] linear = 242 [ 52516] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 242 / 2 --> SNES Residual: 1.736203E-16 1.736203E-19 1.733188E-17 --> max chng: dcmx= 5.3759E-05 dc/dt= 1.7047E-10 [mol/s] == TRANSPORT =============================================== 1 fnrm: 3.18E-15 pnrm: 5.05E-04 inrmr: 3.50E-16 inrmu: 2.29E-05 rsn: 0 2 fnrm: 1.80E-16 pnrm: 1.99E-12 inrmr: 1.98E-17 inrmu: 2.06E-13 rsn: stol TRAN 131 Time= 1.0000E+00 Dt= 1.0000E-02 [y] snes_conv_reason: 4 newton = 2 [ 262] linear = 311 [ 55407] cuts = 0 [ 0] --> SNES Linear/Non-Linear Iterations = 311 / 2 --> SNES Residual: 1.797628E-16 1.797628E-19 1.975069E-17 --> max chng: dcmx= 2.2902E-05 dc/dt= 7.2622E-11 [mol/s] --> write tecplot output file: pflotran-004.tec 0.01 Seconds to write to Tecplot file(s) TRAN steps = 131 newton = 262 linear = 55407 cuts = 0 TRAN SNES time = 23.9 seconds CPU Time: 2.4870E-03 [sec] 4.1450E-05 [min] 6.9083E-07 [hr] Wall Clock Time: 2.6161E+01 [sec] 4.3602E-01 [min] 7.2670E-03 [hr]