================================================================================ ================================================================================ Starting Configure Run at Mon Jan 11 19:30:48 2010 Configure Options: ['--with-cc=gcc', '--with-fc=gfortran', '--download-f-blas-lapack=1', '--download-mpich=1', '-configModules=PETSc.Configure'] Working directory: /home/Administrator/soft/petsc-2.2.1 Python version: 2.5.2 (r252:60911, Dec 2 2008, 09:26:14) [GCC 3.4.4 (cygming special, gdc 0.12, using dmd 0.125)] ================================================================================ ================================================================================ TEST configureBitKeeper from config.sourceControl(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/sourceControl.py:23 TESTING: configureBitKeeper from config.sourceControl(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /usr/local/bin/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /cygdrive/c/WINDOWS/system32/bk...not found Checking for program /cygdrive/c/WINDOWS/bk...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/bk...not found Checking for program /cygdrive/c/Program Files/IDM Computer Solutions/UltraEdit/bk...not found Checking for program /usr/lib/lapack/bk...not found Checking for program /home/Administrator/bk...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/sourceControl.py:28 TESTING: configureCVS from config.sourceControl(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/sourceControl.py:28) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /bin/cvs...not found Checking for program /cygdrive/c/WINDOWS/system32/cvs...not found Checking for program /cygdrive/c/WINDOWS/cvs...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Program Files/IDM Computer Solutions/UltraEdit/cvs...not found Checking for program /usr/lib/lapack/cvs...not found Checking for program /home/Administrator/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/sourceControl.py:33 TESTING: configureSubversion from config.sourceControl(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/sourceControl.py:33) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /bin/svn...not found Checking for program /cygdrive/c/WINDOWS/system32/svn...not found Checking for program /cygdrive/c/WINDOWS/svn...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/svn...not found Checking for program /cygdrive/c/Program Files/IDM Computer Solutions/UltraEdit/svn...not found Checking for program /usr/lib/lapack/svn...not found Checking for program /home/Administrator/svn...not found Substituting ADIC_DEFINES with in PETSc.packages.ADIC Substituting ADIC_CC with in PETSc.packages.ADIC ================================================================================ TEST configureMake from PETSc.packages.Make(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Make.py:21 TESTING: configureMake from PETSc.packages.Make(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Make.py:21) Check various things about make Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Substituting MAKE with /usr/bin/make in PETSc.packages.Make sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: [^] [^_] [^_] ?t*B [^_] [^_] ;5XpB ;5XpB 5XpB ;5hpB [^_] ;5hpB 5hpB [^_] @u-A [^] [^_] ,[^_] $.!B $J!B $S!B $S!B $X!B $S!B ,[^_] $S!B [^_] [^_] 5PyB [^_] [^_] [^_] ,[^_] 5PyB 5PyB [^_] tc<.t+ $HqB $HqB $HqB $HqB $HqB [^_] $D"B $HqB [^_] $(#B $\#B 5(qB 5HqB <[^_] $HqB $($B $3$B 5 {B $I$B $Q$B $Y$B [^_] $HqB ,[^_] $8%B $d%B $5&B $D&B $h&B $"'B $7'B L[^_] $P'B L[^_] $h'B $HqB $HqB =HqB tJ;5 [^_] $HqB t6Jt3 t6Jt3 ,[^_] ,[^_] <[^_] [^_] ,[^_] [^_] [^_] [^_] L[^_] [^_] [^_] t$Ku [^_] [^_] $8*B $l*B t" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 198 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 3 "conftest.c" 2 ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:289 TESTING: checkCxxCompiler from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:289) Locate a functional Cxx compiler Checking for program /usr/local/bin/g++...not found Checking for program /usr/bin/g++...found Substituting CXX with g++ in config.setCompilers sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: sh: g++ -o conftest conftest.o Executing: g++ -o conftest conftest.o sh: sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: sh: g++ -o conftest conftest.o Executing: g++ -o conftest conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:422 TESTING: checkFortranCompiler from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:422) Locate a functional Fortran compiler Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/bin/gfortran...found Substituting FC with gfortran in config.setCompilers sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: sh: gfortran -o conftest conftest.o Executing: gfortran -o conftest conftest.o sh: sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: sh: gfortran -o conftest conftest.o Executing: gfortran -o conftest conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: ================================================================================ TEST checkLinkerFlags from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:447 TESTING: checkLinkerFlags from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:447) Just substitutes the flags right now ================================================================================ TEST checkSharedLinkerFlag from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:451 TESTING: checkSharedLinkerFlag from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:451) Determine what flags are necessary for dynamic library creation sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: sh: gcc -o conftest -shared conftest.o Executing: gcc -o conftest -shared conftest.o sh: ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:461 TESTING: checkSharedLinkerPaths from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:461) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Trying C linker flag -Wl,-rpath, sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: sh: gcc -o conftest -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1 conftest.o Executing: gcc -o conftest -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1 conftest.o sh: Trying C++ linker flag -Wl,-rpath, sh: g++ -c -o conftest.o conftest.cc Executing: g++ -c -o conftest.o conftest.cc sh: sh: g++ -o conftest -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1 conftest.o Executing: g++ -o conftest -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1 conftest.o sh: Trying F77 linker flag -Wl,-rpath, sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: sh: gfortran -o conftest -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1 conftest.o Executing: gfortran -o conftest -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1 conftest.o sh: ================================================================================ TEST output from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:486 TESTING: output from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:486) Output module data as defines and substitutions Substituting CC with CC(gcc) in config.setCompilers Substituting CFLAGS with CFLAGS() in config.setCompilers Substituting C_LINKER_SLFLAG with -Wl,-rpath, in config.setCompilers Substituting CPP with CPP(gcc -E) in config.setCompilers Substituting CPPFLAGS with CPPFLAGS() in config.setCompilers Substituting CXX with CXX(g++) in config.setCompilers Substituting CXX_CXXFLAGS with CXX_CXXFLAGS() in config.setCompilers Substituting CXXFLAGS with CXXFLAGS() in config.setCompilers Substituting CXX_LINKER_SLFLAG with -Wl,-rpath, in config.setCompilers Substituting FC with FC(gfortran) in config.setCompilers Substituting FFLAGS with FFLAGS() in config.setCompilers Substituting F77_LINKER_SLFLAG with -Wl,-rpath, in config.setCompilers Substituting LDFLAGS with LDFLAGS() in config.setCompilers Substituting SHARED_LIBRARY_FLAG with -shared in config.setCompilers ================================================================================ TEST configureArchiver from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:569 TESTING: configureArchiver from config.setCompilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/setCompilers.py:569) Check that the archiver exists and can make a library usable by the compiler sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Substituting AR with /usr/bin/ar in config.setCompilers Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Substituting RANLIB with /usr/bin/ranlib in config.setCompilers sh: /usr/bin/ar cr conf1.a conf1.o Executing: /usr/bin/ar cr conf1.a conf1.o sh: sh: /usr/bin/ranlib conf1.a Executing: /usr/bin/ranlib conf1.a sh: sh: gcc -c -o conftest.o conftest.c Executing: gcc -c -o conftest.o conftest.c sh: sh: gcc -o conftest conftest.o conf1.a Executing: gcc -o conftest conftest.o conf1.a sh: Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Substituting AR with /usr/bin/ar in config.setCompilers Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Substituting RANLIB with /usr/bin/ranlib in config.setCompilers Substituting AR_FLAGS with AR_FLAGS(cr) in config.framework ================================================================================ TEST configureLibrary from PETSc.packages.Matlab(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Matlab.py:40 TESTING: configureLibrary from PETSc.packages.Matlab(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Matlab.py:40) Find a Matlab installation and check if it can work with PETSc Checking for program /usr/local/bin/matlab...not found Checking for program /usr/bin/matlab...not found Checking for program /bin/matlab...not found Checking for program /cygdrive/c/WINDOWS/system32/matlab...not found Checking for program /cygdrive/c/WINDOWS/matlab...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/matlab...not found Checking for program /cygdrive/c/Program Files/IDM Computer Solutions/UltraEdit/matlab...not found Checking for program /usr/lib/lapack/matlab...not found Checking for program /home/Administrator/matlab...not found Checking for program /home/Administrator/soft/petsc-2.2.1/bin/win32fe/matlab...not found Configuring PETSc to not use Matlab Substituting MATLAB_MEX with in PETSc.packages.Matlab Substituting MATLAB_CC with in PETSc.packages.Matlab Substituting MATLAB_COMMAND with in PETSc.packages.Matlab Substituting MATLAB_DIR with in PETSc.packages.Matlab Substituting MATLAB_INCLUDE with in PETSc.packages.Matlab Substituting MATLAB_LIB with in PETSc.packages.Matlab ================================================================================ TEST configureCompilerFlags from PETSc.packages.compilerFlags(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/compilerFlags.py:42 TESTING: configureCompilerFlags from PETSc.packages.compilerFlags(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/compilerFlags.py:42) Get all compiler flags from the Petsc database sh: gcc --version Executing: gcc --version sh: gcc (GCC) 4.3.4 20090804 (release) 1 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Substituting C_VERSION with C_VERSION(gcc (GCC) 4.3.4 20090804 (release) 1) in PETSc.packages.compilerFlags sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Added C compiler flag -Wall sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C g compiler flag -g3 sh: gcc -c -o conftest.o -Wall -g3 conftest.c Executing: gcc -c -o conftest.o -Wall -g3 conftest.c sh: sh: gcc -c -o conftest.o -Wall -g3 conftest.c Executing: gcc -c -o conftest.o -Wall -g3 conftest.c sh: Substituting CFLAGS_g with CFLAGS_g(-g3) in PETSc.packages.compilerFlags sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C O compiler flag -O sh: gcc -c -o conftest.o -Wall -O conftest.c Executing: gcc -c -o conftest.o -Wall -O conftest.c sh: Trying C O compiler flag -fomit-frame-pointer sh: gcc -c -o conftest.o -Wall -fomit-frame-pointer conftest.c Executing: gcc -c -o conftest.o -Wall -fomit-frame-pointer conftest.c sh: Trying C O compiler flag -Wno-strict-aliasing sh: gcc -c -o conftest.o -Wall -Wno-strict-aliasing conftest.c Executing: gcc -c -o conftest.o -Wall -Wno-strict-aliasing conftest.c sh: sh: gcc -c -o conftest.o -Wall -O -fomit-frame-pointer -Wno-strict-aliasing conftest.c Executing: gcc -c -o conftest.o -Wall -O -fomit-frame-pointer -Wno-strict-aliasing conftest.c sh: Substituting CFLAGS_O with CFLAGS_O(-O -fomit-frame-pointer -Wno-strict-aliasing) in PETSc.packages.compilerFlags sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Substituting CFLAGS_g_complex with CFLAGS_g_complex() in PETSc.packages.compilerFlags sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Substituting CFLAGS_O_complex with CFLAGS_O_complex() in PETSc.packages.compilerFlags sh: g++ --version Executing: g++ --version sh: g++ (GCC) 4.3.4 20090804 (release) 1 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Substituting CXX_VERSION with CXX_VERSION(g++ (GCC) 4.3.4 20090804 (release) 1) in PETSc.packages.compilerFlags sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: Added Cxx compiler flag -Wall sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx g compiler flag -g3 sh: g++ -c -o conftest.o -Wall -g3 conftest.cc Executing: g++ -c -o conftest.o -Wall -g3 conftest.cc sh: sh: g++ -c -o conftest.o -Wall -g3 conftest.cc Executing: g++ -c -o conftest.o -Wall -g3 conftest.cc sh: Substituting CXXFLAGS_g with CXXFLAGS_g(-g3) in PETSc.packages.compilerFlags sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx O compiler flag -O sh: g++ -c -o conftest.o -Wall -O conftest.cc Executing: g++ -c -o conftest.o -Wall -O conftest.cc sh: Trying Cxx O compiler flag -fomit-frame-pointer sh: g++ -c -o conftest.o -Wall -fomit-frame-pointer conftest.cc Executing: g++ -c -o conftest.o -Wall -fomit-frame-pointer conftest.cc sh: sh: g++ -c -o conftest.o -Wall -O -fomit-frame-pointer conftest.cc Executing: g++ -c -o conftest.o -Wall -O -fomit-frame-pointer conftest.cc sh: Substituting CXXFLAGS_O with CXXFLAGS_O(-O -fomit-frame-pointer) in PETSc.packages.compilerFlags sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx g_complex compiler flag -g3 sh: g++ -c -o conftest.o -Wall -g3 conftest.cc Executing: g++ -c -o conftest.o -Wall -g3 conftest.cc sh: sh: g++ -c -o conftest.o -Wall -g3 conftest.cc Executing: g++ -c -o conftest.o -Wall -g3 conftest.cc sh: Substituting CXXFLAGS_g_complex with CXXFLAGS_g_complex(-g3) in PETSc.packages.compilerFlags sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx O_complex compiler flag -O sh: g++ -c -o conftest.o -Wall -O conftest.cc Executing: g++ -c -o conftest.o -Wall -O conftest.cc sh: Trying Cxx O_complex compiler flag -fomit-frame-pointer sh: g++ -c -o conftest.o -Wall -fomit-frame-pointer conftest.cc Executing: g++ -c -o conftest.o -Wall -fomit-frame-pointer conftest.cc sh: sh: g++ -c -o conftest.o -Wall -O -fomit-frame-pointer conftest.cc Executing: g++ -c -o conftest.o -Wall -O -fomit-frame-pointer conftest.cc sh: Substituting CXXFLAGS_O_complex with CXXFLAGS_O_complex(-O -fomit-frame-pointer) in PETSc.packages.compilerFlags sh: gfortran --version Executing: gfortran --version sh: GNU Fortran (GCC) 4.3.4 20090804 (release) 1 Copyright (C) 2008 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Substituting F_VERSION with F_VERSION(GNU Fortran (GCC) 4.3.4 20090804 (release) 1) in PETSc.packages.compilerFlags Trying F77 g compiler flag -g sh: gfortran -c -o conftest.o -g conftest.F Executing: gfortran -c -o conftest.o -g conftest.F sh: sh: gfortran -c -o conftest.o -g conftest.F Executing: gfortran -c -o conftest.o -g conftest.F sh: Substituting FFLAGS_g with FFLAGS_g(-g) in PETSc.packages.compilerFlags Trying F77 O compiler flag -O sh: gfortran -c -o conftest.o -O conftest.F Executing: gfortran -c -o conftest.o -O conftest.F sh: sh: gfortran -c -o conftest.o -O conftest.F Executing: gfortran -c -o conftest.o -O conftest.F sh: Substituting FFLAGS_O with FFLAGS_O(-O) in PETSc.packages.compilerFlags sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: Substituting FFLAGS_g_complex with FFLAGS_g_complex() in PETSc.packages.compilerFlags sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: Substituting FFLAGS_O_complex with FFLAGS_O_complex() in PETSc.packages.compilerFlags Substituting PETSCFLAGS with PETSCFLAGS() in config.framework Substituting COPTFLAGS with COPTFLAGS() in config.framework Substituting FOPTFLAGS with FOPTFLAGS() in config.framework sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkCRestrict from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:24 TESTING: checkCRestrict from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:24) Check for the C restrict keyword sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function ‘main’: conftest.c:5: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ conftest.c:5: error: ‘x’ undeclared (first use in this function) conftest.c:5: error: (Each undeclared identifier is reported only once conftest.c:5: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function ‘main’: conftest.c:5: warning: unused variable ‘x’ } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } ================================================================================ TEST checkCFormatting from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:40 TESTING: checkCFormatting from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:40) Activate format string checking if using the GNU compilers sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|undocumented|params}[,{[^]joined|[^]separate}] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmach... ... Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkCxxNamespace from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:73 TESTING: checkCxxNamespace from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:73) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:48 TESTING: checkCxxOptionalExtensions from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:48) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ sh: g++ -c -o conftest.o -Wall conftest.c Executing: g++ -c -o conftest.o -Wall conftest.c sh: Added C++ compiler flag ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:83 TESTING: checkFortranTypeSizes from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:83) Check whether real*8 is supported and suggest flags which will allow support sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:113 TESTING: checkFortranNameMangling from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:113) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Also checks weird g77 behavior, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: sh: gfortran -o conftest conftest.o confc0.o Executing: gfortran -o conftest conftest.o confc0.o sh: sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: sh: gfortran -o conftest conftest.o confc0.o Executing: gfortran -o conftest conftest.o confc0.o sh: Possible ERROR while running linker: conftest.o:conftest.F:(.text+0x1b): undefined reference to `_d1_chk_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.F:(.text+0x1b): undefined reference to `_d1_chk_' collect2: ld returned 1 exit status } in gfortran -o conftest conftest.o confc0.o Source: program main call d1_chk() end ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:179 TESTING: checkFortranPreprocessor from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:179) Determine if Fortran handles preprocessing properly sh: gfortran -c -o conftest.o -DPTesting conftest.F Executing: gfortran -c -o conftest.o -DPTesting conftest.F sh: Added F77 compiler flag Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:201 TESTING: checkFortranLibraries from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:201) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: sh: gfortran -o conftest -v conftest.o Executing: gfortran -o conftest -v conftest.o sh: Possible ERROR while running linker: Driving: gfortran -o conftest -v conftest.o -lgfortranbegin -lgfortran -shared-libgcc Using built-in specs. Target: i686-pc-cygwin Configured with: /gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4/configure --srcdir=/gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man --datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v --with-gmp=/usr --with-mpfr=/usr --enable-bootstrap --enable-version-specific-runtime-libs --with-slibdir=/usr/bin --libexecdir=/usr/lib --enable-static --enable-shared --enable-shared-libgcc --disable-__cxa_atexit --with-gnu-ld --with-gnu-as --with-dwarf2 --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ --disable-symvers --enable-libjava --program-suffix=-4 --enable-libgomp --enable-libssp --enable-libada --enable-threads=posix --with-arch=i686 --with-tune=generic --enable-libgcj-sublibs CC=gcc-4 CXX=g++-4 CC_FOR_TARGET=gcc-4 CXX_FOR_TARGET=g++-4 GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind AS=/opt/gcc-tools/bin/as.exe AS_FOR_TARGET=/opt/gcc-tools/bin/as.exe LD=/opt/gcc-tools/bin/ld.exe LD_FOR_TARGET=/opt/gcc-tools/bin/ld.exe --with-ecj-jar=/usr/share/java/ecj.jar Thread model: posix gcc version 4.3.4 20090804 (release) 1 (GCC) COMPILER_PATH=/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ LIBRARY_PATH=/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' 'conftest.exe' '-v' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/lib/gcc/i686-pc-cygwin/4.3.4/collect2.exe -tsaware --wrap _Znwj --wrap _Znaj --wrap _ZdlPv --wrap _ZdaPv --wrap _ZnwjRKSt9nothrow_t --wrap _ZnajRKSt9nothrow_t --wrap _ZdlPvRKSt9nothrow_t --wrap _ZdaPvRKSt9nothrow_t -Bdynamic --dll-search-prefix=cyg -u ___register_frame_info -u ___deregister_frame_info -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../crt0.o /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtbegin.o -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. conftest.o -lgfortranbegin -lgfortran -lgcc_s -lgcc_s -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc_s -lgcc_s -lgcc /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtend.o output: error message = {Driving: gfortran -o conftest -v conftest.o -lgfortranbegin -lgfortran -shared-libgcc Using built-in specs. Target: i686-pc-cygwin Configured with: /gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4/configure --srcdir=/gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man --datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v --with-gmp=/usr --with-mpfr=/usr --enable-bootstrap --enable-version-specific-runtime-libs --with-slibdir=/usr/bin --libexecdir=/usr/lib --enable-static --enable-shared --enable-shared-libgcc --disable-__cxa_atexit --with-gnu-ld --with-gnu-as --with-dwarf2 --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ --disable-symvers --enable-libjava --program-suffix=-4 --enable-libgomp --enable-libssp --enable-libada --enable-threads=posix --with-arch=i686 --with-tune=generic --enable-libgcj-sublibs CC=gcc-4 CXX=g++-4 CC_FOR_TARGET=gcc-4 CXX_FOR_TARGET=g++-4 GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind AS=/opt/gcc-tools/bin/as.exe AS_FOR_TARGET=/opt/gcc-tools/bin/as.exe LD=/opt/gcc-tools/bin/ld.exe LD_FOR_TARGET=/opt/gcc-tools/bin/ld.exe --with-ecj-jar=/usr/share/java/ecj.jar Thread model: posix gcc version 4.3.4 20090804 (release) 1 (GCC) COMPILER_PATH=/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ LIBRARY_PATH=/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' 'conftest.exe' '-v' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/lib/gcc/i686-pc-cygwin/4.3.4/collect2.exe -tsaware --wrap _Znwj --wrap _Znaj --wrap _ZdlPv --wrap _ZdaPv --wrap _ZnwjRKSt9nothrow_t --wrap _ZnajRKSt9nothrow_t --wrap _ZdlPvRKSt9nothrow_t --wrap _ZdaPvRKSt9nothrow_t -Bdynamic --dll-search-prefix=cyg -u ___register_frame_info -u ___deregister_frame_info -o conftest.exe /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../crt0.o /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtbegin.o -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. conftest.o -lgfortranbegin -lgfortran -lgcc_s -lgcc_s -lgcc -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 -lgcc_s -lgcc_s -lgcc /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtend.o } in gfortran -o conftest -v conftest.o Source: program main end Checking arg Driving: Unknown arg Driving: Checking arg gfortran Unknown arg gfortran Checking arg -o Unknown arg -o Checking arg conftest Unknown arg conftest Checking arg -v Unknown arg -v Checking arg conftest.o Unknown arg conftest.o Checking arg -lgfortranbegin Found special library: -lgfortranbegin Checking arg -lgfortran Found special library: -lgfortran Checking arg -shared-libgcc Unknown arg -shared-libgcc Checking arg Using Unknown arg Using Checking arg built-in Unknown arg built-in Checking arg specs. Unknown arg specs. Checking arg Target: Unknown arg Target: Checking arg i686-pc-cygwin Unknown arg i686-pc-cygwin Checking arg Configured Unknown arg Configured Checking arg with: Unknown arg with: Checking arg /gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4/configure Unknown arg /gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4/configure Checking arg --srcdir=/gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4 Unknown arg --srcdir=/gnu/gcc/releases/packaging/4.3.4-3/gcc4-4.3.4-3/src/gcc-4.3.4 Checking arg --prefix=/usr Unknown arg --prefix=/usr Checking arg --exec-prefix=/usr Unknown arg --exec-prefix=/usr Checking arg --bindir=/usr/bin Unknown arg --bindir=/usr/bin Checking arg --sbindir=/usr/sbin Unknown arg --sbindir=/usr/sbin Checking arg --libexecdir=/usr/lib Unknown arg --libexecdir=/usr/lib Checking arg --datadir=/usr/share Unknown arg --datadir=/usr/share Checking arg --localstatedir=/var Unknown arg --localstatedir=/var Checking arg --sysconfdir=/etc Unknown arg --sysconfdir=/etc Checking arg --infodir=/usr/share/info Unknown arg --infodir=/usr/share/info Checking arg --mandir=/usr/share/man Unknown arg --mandir=/usr/share/man Checking arg --datadir=/usr/share Unknown arg --datadir=/usr/share Checking arg --infodir=/usr/share/info Unknown arg --infodir=/usr/share/info Checking arg --mandir=/usr/share/man Unknown arg --mandir=/usr/share/man Checking arg -v Unknown arg -v Checking arg --with-gmp=/usr Unknown arg --with-gmp=/usr Checking arg --with-mpfr=/usr Unknown arg --with-mpfr=/usr Checking arg --enable-bootstrap Unknown arg --enable-bootstrap Checking arg --enable-version-specific-runtime-libs Unknown arg --enable-version-specific-runtime-libs Checking arg --with-slibdir=/usr/bin Unknown arg --with-slibdir=/usr/bin Checking arg --libexecdir=/usr/lib Unknown arg --libexecdir=/usr/lib Checking arg --enable-static Unknown arg --enable-static Checking arg --enable-shared Unknown arg --enable-shared Checking arg --enable-shared-libgcc Unknown arg --enable-shared-libgcc Checking arg --disable-__cxa_atexit Unknown arg --disable-__cxa_atexit Checking arg --with-gnu-ld Unknown arg --with-gnu-ld Checking arg --with-gnu-as Unknown arg --with-gnu-as Checking arg --with-dwarf2 Unknown arg --with-dwarf2 Checking arg --disable-sjlj-exceptions Unknown arg --disable-sjlj-exceptions Checking arg --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ Unknown arg --enable-languages=ada,c,c++,fortran,java,objc,obj-c++ Checking arg --disable-symvers Unknown arg --disable-symvers Checking arg --enable-libjava Unknown arg --enable-libjava Checking arg --program-suffix=-4 Unknown arg --program-suffix=-4 Checking arg --enable-libgomp Unknown arg --enable-libgomp Checking arg --enable-libssp Unknown arg --enable-libssp Checking arg --enable-libada Unknown arg --enable-libada Checking arg --enable-threads=posix Unknown arg --enable-threads=posix Checking arg --with-arch=i686 Unknown arg --with-arch=i686 Checking arg --with-tune=generic Unknown arg --with-tune=generic Checking arg --enable-libgcj-sublibs Unknown arg --enable-libgcj-sublibs Checking arg CC=gcc-4 Unknown arg CC=gcc-4 Checking arg CXX=g++-4 Unknown arg CXX=g++-4 Checking arg CC_FOR_TARGET=gcc-4 Unknown arg CC_FOR_TARGET=gcc-4 Checking arg CXX_FOR_TARGET=g++-4 Unknown arg CXX_FOR_TARGET=g++-4 Checking arg GNATMAKE_FOR_TARGET=gnatmake Unknown arg GNATMAKE_FOR_TARGET=gnatmake Checking arg GNATBIND_FOR_TARGET=gnatbind Unknown arg GNATBIND_FOR_TARGET=gnatbind Checking arg AS=/opt/gcc-tools/bin/as.exe Unknown arg AS=/opt/gcc-tools/bin/as.exe Checking arg AS_FOR_TARGET=/opt/gcc-tools/bin/as.exe Unknown arg AS_FOR_TARGET=/opt/gcc-tools/bin/as.exe Checking arg LD=/opt/gcc-tools/bin/ld.exe Unknown arg LD=/opt/gcc-tools/bin/ld.exe Checking arg LD_FOR_TARGET=/opt/gcc-tools/bin/ld.exe Unknown arg LD_FOR_TARGET=/opt/gcc-tools/bin/ld.exe Checking arg --with-ecj-jar=/usr/share/java/ecj.jar Unknown arg --with-ecj-jar=/usr/share/java/ecj.jar Checking arg Thread Unknown arg Thread Checking arg model: Unknown arg model: Checking arg posix Unknown arg posix Checking arg gcc Unknown arg gcc Checking arg version Unknown arg version Checking arg 4.3.4 Unknown arg 4.3.4 Checking arg 20090804 Unknown arg 20090804 Checking arg (release) Unknown arg (release) Checking arg 1 Unknown arg 1 Checking arg (GCC) Unknown arg (GCC) Checking arg COMPILER_PATH=/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/4.3.4/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/4.3.4/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/4.3.4/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ Checking arg LIBRARY_PATH=/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/:/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../:/lib/:/usr/lib/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/4.3.4/ Handling HPUX list of directories: /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ Handling HPUX list of directories: /lib/ Handling HPUX list of directories: /usr/lib/ Checking arg COLLECT_GCC_OPTIONS='-o' Unknown arg COLLECT_GCC_OPTIONS='-o' Checking arg 'conftest.exe' Unknown arg 'conftest.exe' Checking arg '-v' Unknown arg '-v' Checking arg '-shared-libgcc' Unknown arg '-shared-libgcc' Checking arg '-mtune=generic' Unknown arg '-mtune=generic' Checking arg '-march=i686' Unknown arg '-march=i686' Checking arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/collect2.exe Unknown arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/collect2.exe Checking arg -tsaware Unknown arg -tsaware Checking arg --wrap Unknown arg --wrap Checking arg _Znwj Unknown arg _Znwj Checking arg --wrap Unknown arg --wrap Checking arg _Znaj Unknown arg _Znaj Checking arg --wrap Unknown arg --wrap Checking arg _ZdlPv Unknown arg _ZdlPv Checking arg --wrap Unknown arg --wrap Checking arg _ZdaPv Unknown arg _ZdaPv Checking arg --wrap Unknown arg --wrap Checking arg _ZnwjRKSt9nothrow_t Unknown arg _ZnwjRKSt9nothrow_t Checking arg --wrap Unknown arg --wrap Checking arg _ZnajRKSt9nothrow_t Unknown arg _ZnajRKSt9nothrow_t Checking arg --wrap Unknown arg --wrap Checking arg _ZdlPvRKSt9nothrow_t Unknown arg _ZdlPvRKSt9nothrow_t Checking arg --wrap Unknown arg --wrap Checking arg _ZdaPvRKSt9nothrow_t Unknown arg _ZdaPvRKSt9nothrow_t Checking arg -Bdynamic Unknown arg -Bdynamic Checking arg --dll-search-prefix=cyg Unknown arg --dll-search-prefix=cyg Checking arg -u Unknown arg -u Checking arg ___register_frame_info Unknown arg ___register_frame_info Checking arg -u Unknown arg -u Checking arg ___deregister_frame_info Unknown arg ___deregister_frame_info Checking arg -o Unknown arg -o Checking arg conftest.exe Unknown arg conftest.exe Checking arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../crt0.o Unknown arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../crt0.o Checking arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtbegin.o Unknown arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtbegin.o Checking arg -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 Found special library: -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 Checking arg -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 Checking arg -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. Found special library: -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. Checking arg conftest.o Unknown arg conftest.o Checking arg -lgfortranbegin Checking arg -lgfortran Checking arg -lgcc_s Found special library: -lgcc_s Checking arg -lgcc_s Checking arg -lgcc Checking arg -lcygwin Found special library: -lcygwin Checking arg -luser32 Found special library: -luser32 Checking arg -lkernel32 Checking arg -ladvapi32 Found special library: -ladvapi32 Checking arg -lshell32 Found special library: -lshell32 Checking arg -lgcc_s Checking arg -lgcc_s Checking arg -lgcc Checking arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtend.o Unknown arg /usr/lib/gcc/i686-pc-cygwin/4.3.4/crtend.o Libraries needed to link against Fortran compiler -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Check that Fortran libraries can be used from C sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Check for Intel PEPCF90 library sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -lPEPCF90 -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -lPEPCF90 -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -lPEPCF90 -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Intel PEPCF90 library does not exist Check that Fortran libraries can be used from C++ sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: sh: g++ -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: g++ -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: sh: g++ -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: g++ -o conftest -Wall conftest.o -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Fortran libraries can be used from C++ ================================================================================ TEST checkFortran90Interface from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:426 TESTING: checkFortran90Interface from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:426) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST output from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:442 TESTING: output from config.compilers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/compilers.py:442) Output module data as defines and substitutions Defined restrict to __restrict__ in config.framework Defined PRINTF_FORMAT_CHECK(A,B) to __attribute__((format (printf, A, B))) in config.compilers Defined HAVE_CXX_NAMESPACE to 1 in config.compilers Defined HAVE_FORTRAN_UNDERSCORE to 1 in config.compilers Substituting FLIBS with -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 in config.compilers ================================================================================ TEST configureLibrary from PETSc.packages.Triangle(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Triangle.py:14 TESTING: configureLibrary from PETSc.packages.Triangle(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Triangle.py:14) Find a Triangle installation and check if it can work with PETSc Substituting TRIANGLE_INCLUDE with in PETSc.packages.Triangle Substituting TRIANGLE_LIB with in PETSc.packages.Triangle ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/PVODE.py:14 TESTING: configureLibrary from PETSc.packages.PVODE(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/PVODE.py:14) Find a PVODE installation and check if it can work with PETSc Substituting PVODE_INCLUDE with in PETSc.packages.PVODE Substituting PVODE_LIB with in PETSc.packages.PVODE ================================================================================ TEST configureLibrary from PETSc.packages.PLAPACK(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/PLAPACK.py:11 TESTING: configureLibrary from PETSc.packages.PLAPACK(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/PLAPACK.py:11) Find a PLAPACK installation and check if it can work with PETSc Substituting PLAPACK_INCLUDE with in PETSc.packages.PLAPACK Substituting PLAPACK_LIB with in PETSc.packages.PLAPACK ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/NetCDF.py:11 TESTING: configureLibrary from PETSc.packages.NetCDF(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/NetCDF.py:11) Find a NetCDF installation and check if it can work with PETSc Substituting NETCDF_INCLUDE with in PETSc.packages.NetCDF Substituting NETCDF_LIB with in PETSc.packages.NetCDF ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Mathematica.py:11 TESTING: configureLibrary from PETSc.packages.Mathematica(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Mathematica.py:11) Find a Mathematica installation and check if it can work with PETSc Substituting MATHEMATICA_INCLUDE with in PETSc.packages.Mathematica Substituting MATHEMATICA_LIB with in PETSc.packages.Mathematica ================================================================================ TEST configureLgrind from PETSc.packages.lgrind(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/lgrind.py:76 TESTING: configureLgrind from PETSc.packages.lgrind(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/lgrind.py:76) Determine whether the Lgrind exist or not Not BitKeeper clone of PETSc, don't need Lgrind ================================================================================ TEST configureC2html from PETSc.packages.C2HTML(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/C2HTML.py:83 TESTING: configureC2html from PETSc.packages.C2HTML(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/C2HTML.py:83) Determine whether the C2html exist or not Not BitKeeper clone of PETSc, don't need C2html ================================================================================ TEST configureSowing from PETSc.packages.Sowing(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Sowing.py:96 TESTING: configureSowing from PETSc.packages.Sowing(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Sowing.py:96) Determine whether the Sowing exist or not Not BitKeeper clone of PETSc, don't need Sowing ================================================================================ TEST configureLibrary from PETSc.packages.X11(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/X11.py:84 TESTING: configureLibrary from PETSc.packages.X11(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/X11.py:84) Checks for X windows, sets PETSC_HAVE_X11 if found, and defines X_CFLAGS, X_PRE_LIBS, X_LIBS, and X_EXTRA_LIBS sh: xmkmf Executing: xmkmf sh: imake -DUseInstalled -I/usr/lib/X11/config sh: /usr/bin/make acfindx Executing: /usr/bin/make acfindx sh: X_INCLUDE_ROOT = /usr/include X_USR_LIB_DIR = /usr/lib X_LIB_DIR = /usr/lib/X11 sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/X11/Intrinsic.h" 1 3 4 # 56 "/usr/include/X11/Intrinsic.h" 3 4 # 1 "/usr/include/X11/Xlib.h" 1 3 4 # 41 "/usr/include/X11/Xlib.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/inclu... ... rmValuePtr , XtPointer* ); extern Boolean XtCvtIntToPixmap( Display* , XrmValuePtr , Cardinal* , XrmValuePtr , XrmValuePtr , XtPointer* ); extern Boolean XtCvtIntToShort( Display* , XrmValuePtr , Cardinal* , XrmValuePtr , XrmValuePtr , XtPointer* ); extern Boolean XtCvtIntToUnsignedChar( Display* , XrmValuePtr , Cardinal* , XrmValuePtr , XrmValuePtr , XtPointer* ); extern Boolean XtCvtColorToPixel( Display* , XrmValuePtr , Cardinal* , XrmValuePtr , XrmValuePtr , XtPointer* ); # 3 "conftest.c" 2 sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function ‘main’: conftest.c:5: warning: implicit declaration of function ‘XtMalloc’ } Source: #include "confdefs.h" #include "conffix.h" int main() { XtMalloc(); ; return 0; } sh: gcc -o conftest -Wall conftest.o -lXt Executing: gcc -o conftest -Wall conftest.o -lXt sh: sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function ‘main’: conftest.c:5: warning: implicit declaration of function ‘XtMalloc’ } Source: #include "confdefs.h" #include "conffix.h" int main() { XtMalloc(); ; return 0; } sh: gcc -o conftest -Wall conftest.o -lXt Executing: gcc -o conftest -Wall conftest.o -lXt sh: Defined HAVE_X11 to 1 in PETSc.packages.X11 Substituting X_CFLAGS with in PETSc.packages.X11 Substituting X_LIBS with -lX11 in PETSc.packages.X11 Substituting X_PRE_LIBS with in PETSc.packages.X11 Substituting X_EXTRA_LIBS with in PETSc.packages.X11 Substituting X11_INCLUDE with in PETSc.packages.X11 Substituting X11_LIB with -lX11 in PETSc.packages.X11 ================================================================================ TEST checkStdC from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:27 TESTING: checkStdC from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:27) sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... trlcpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 100 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 101 "/usr/include/string.h" 2 3 4 # 3 "conftest.c" 2 sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 198 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 3 "conftest.c" 2 sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o Executing: gcc -o conftest -Wall conftest.o sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined STDC_HEADERS to 1 in config.framework ================================================================================ TEST checkStat from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:60 TESTING: checkStat from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:60) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... const char *__path, mode_t __mode, dev_t __dev ); int __attribute__((__cdecl__)) fchmodat (int, const char *, mode_t, int); int __attribute__((__cdecl__)) fstatat (int, const char *, struct stat *, int); int __attribute__((__cdecl__)) mkdirat (int, const char *, mode_t); int __attribute__((__cdecl__)) mkfifoat (int, const char *, mode_t); int __attribute__((__cdecl__)) mknodat (int, const char *, mode_t, dev_t); int __attribute__((__cdecl__)) utimensat (int, const char *, const struct timespec *, int); int __attribute__((__cdecl__)) futimens (int, const struct timespec *); # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:95 TESTING: checkSysWait from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:95) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Defined HAVE_SYS_WAIT_H to 1 in config.headers ================================================================================ TEST checkTime from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:117 TESTING: checkTime from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:117) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 3 "conftest.c" 2 Defined HAVE_TIME_H to 1 in config.headers Checking for header: sys/time.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/inc... ... 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; # 74 "/usr/include/sys/time.h" 3 4 int __attribute__((__cdecl__)) gettimeofday (struct timeval *__p, void *__tz); int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval *__value, struct itimerval *__ovalue); # 3 "conftest.c" 2 Defined HAVE_SYS_TIME_H to 1 in config.headers sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Defined TIME_WITH_SYS_TIME to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: dlfcn.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 3 "conftest.c" 2 Defined HAVE_DLFCN_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: error: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: error: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_ENDIAN_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/sys/_default_fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/includ... ... getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval *__value, struct itimerval *__ovalue); # 182 "/usr/include/sys/_default_fcntl.h" 2 3 4 extern int futimesat (int, const char *, const struct timeval *); extern int openat (int, const char *, int, ...); extern int unlinkat (int, const char *, int); # 4 "/usr/include/sys/fcntl.h" 2 3 4 # 15 "/usr/include/fcntl.h" 2 3 4 # 41 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int, off_t, off_t, int); extern int posix_fallocate (int, off_t, off_t); # 3 "conftest.c" 2 Defined HAVE_FCNTL_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include/float.h" 1 3 4 # 3 "conftest.c" 2 Defined HAVE_FLOAT_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long get_osfhandle(int); extern int setmode (int __fd, int __mode); int access(const char *__path, int __amode); # 3 "conftest.c" 2 Defined HAVE_IO_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 14 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 1... ... pc-cygwin/4.3.4/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 14 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_LIMITS_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/inclu... ... nt fsmblks; int uordblks; int fordblks; int keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 3 "conftest.c" 2 Defined HAVE_MALLOC_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/confi... ... attr_t {char __dummy;} *pthread_rwlockattr_t; # 496 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); # 3 "conftest.c" 2 Defined HAVE_PWD_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config... ... __restrict, int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); void insque (void *, void *); void remque (void *); # 3 "conftest.c" 2 Defined HAVE_SEARCH_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 17 "/usr/include/strings.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inc... ... typedef unsigned int size_t; # 21 "/usr/include/strings.h" 2 3 4 int __attribute__((__cdecl__)) bcmp (const void *, const void *, size_t); void __attribute__((__cdecl__)) bcopy (const void *, void *, size_t); void __attribute__((__cdecl__)) bzero (void *, size_t); int __attribute__((__cdecl__)) ffs (int); char *__attribute__((__cdecl__)) index (const char *, int); char *__attribute__((__cdecl__)) rindex (const char *, int); int __attribute__((__cdecl__)) strcasecmp (const char *, const char *); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); # 3 "conftest.c" 2 Defined HAVE_STRINGS_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: error: stropts.h: No such file or directory ret = 256 error message = {conftest.c:3:21: error: stropts.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/... ... s_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); ssize_t __attribute__((__cdecl__)) readlink (const char *__path, char *__buf, size_t __buflen); ssize_t __attribute__((__cdecl__)) readlinkat (int __dirfd1, const char *__path, char *__buf, size_t __buflen); int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); # 5 "/usr/include/unistd.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_UNISTD_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_MACHINE_ENDIAN_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 12 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/... ... mits.h" 1 3 4 # 122 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 14 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/include-fixed/limits.h" 2 3 4 # 15 "/usr/include/sys/param.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_SYS_PARAM_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/windows.h" 1 3 4 # 16 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/windows.h" 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/windows.h" 3 # 47 "/usr/lib/gcc/i686-pc-cygwin/4.3.... ... ead_info { DWORD tid; BOOL is_active_thread; CONTEXT thread_context; } __attribute__ ((packed)) ; struct win32_core_module_info { void* base_address; int module_name_size; char module_name[1]; } __attribute__ ((packed)) ; struct win32_pstatus { unsigned long data_type; union { struct win32_core_process_info process_info; struct win32_core_thread_info thread_info; struct win32_core_module_info module_info; } data ; } __attribute__ ((packed)) ; typedef struct win32_pstatus win32_pstatus_t ; # 17 "/usr/include/sys/procfs.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_SYS_PROCFS_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/... ... im_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 3 "conftest.c" 2 Defined HAVE_SYS_RESOURCE_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: error: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: error: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/in... ... "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 3 "conftest.c" 2 Defined HAVE_SYS_TIMES_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 3 "conftest.c" 2 Defined HAVE_SYS_UTSNAME_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/inclu... ... trlcpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); # 100 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 101 "/usr/include/string.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_STRING_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... st char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__n, char **__end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__n, char **__end_PTR, int __base); # 198 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); # 3 "conftest.c" 2 Defined HAVE_STDLIB_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 14 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 15 "/usr/include/features.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 16 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # ... ... ct msghdr *msg, int flags); ssize_t sendto (int, const void *, size_t __len, int __flags, const struct sockaddr *__to, socklen_t __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, socklen_t __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, socklen_t *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 3 "conftest.c" 2 Defined HAVE_SYS_SOCKET_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 14 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cy... ... include/cygwin/wait.h" 1 3 4 # 17 "/usr/include/sys/wait.h" 2 3 4 pid_t wait (int *); pid_t waitpid (pid_t, int *, int); pid_t wait3 (int *__status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, int *__status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 3 "conftest.c" 2 Defined HAVE_SYS_WAIT_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 18 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint... ... req { struct in6_addr ipv6mr_multiaddr; uint32_t ipv6mr_interface; }; struct in6_pktinfo { struct in6_addr ipi6_addr; uint32_t ipi6_ifindex; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 262 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 extern int bindresvport (int, struct sockaddr_in *); extern int bindresvport_sa (int, struct sockaddr *); # 3 "conftest.c" 2 Defined HAVE_NETINET_IN_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 66 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/inttypes.h" 1 3 4 # 14 "/usr/include/inttypes.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 18 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long long uint64_t; typedef signed char... ... uct sockaddr *, socklen_t, char *, socklen_t, char *, socklen_t, int); int rcmd (char **, uint16_t, const char *, const char *, const char *, int *); int rcmd_af (char **, uint16_t, const char *, const char *, const char *, int *, int); int rexec (char **, uint16_t rport, char *, char *, char *, int *); int rresvport (int *); int rresvport_af (int *, int); int iruserok (unsigned long, int, const char *, const char *); int iruserok_sa (const void *, int, int, const char *, const char *); int ruserok (const char *, int, const char *, const char *); # 3 "conftest.c" 2 Defined HAVE_NETDB_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_... ... d, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *evp, timer_t *timerid); int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *value, struct itimerspec *ovalue); int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 3 "conftest.c" 2 Defined HAVE_TIME_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/Ws2tcpip.h" 1 3 4 # 12 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/Ws2tcpip.h" 3 4 # 13 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/Ws2tcpip.h" 3 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/winsock2.h" 1 3 4 # 17 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/winsock2.h" 3 4 # 18 "/usr/lib/gcc/i68... ... dwLanguageId, (LPWSTR)message, 1024, ((void*)0)); return message; } # 338 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/Ws2tcpip.h" 3 struct sockaddr_in6_old { short sin6_family; u_short sin6_port; u_long sin6_flowinfo; struct in6_addr sin6_addr; }; typedef union sockaddr_gen{ struct sockaddr Address; struct sockaddr_in AddressIn; struct sockaddr_in6_old AddressIn6; } sockaddr_gen; typedef struct _INTERFACE_INFO { u_long iiFlags; sockaddr_gen iiAddress; sockaddr_gen iiBroadcastAddress; sockaddr_gen iiNetmask; } INTERFACE_INFO, *LPINTERFACE_INFO; # 3 "conftest.c" 2 Defined HAVE_WS2TCPIP_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 186 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 187 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr... ... thread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 496 "/usr/include/sys/types.h" 2 3 4 # 3 "conftest.c" 2 Defined HAVE_SYS_TYPES_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/WindowsX.h" 1 3 4 # 5 "/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../include/w32api/WindowsX.h" 3 # 3 "conftest.c" 2 Defined HAVE_WINDOWSX_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: dlfcn.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 3 "conftest.c" 2 Defined HAVE_DLFCN_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: dlfcn.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 3 "conftest.c" 2 Defined HAVE_DLFCN_H to 1 in config.headers ================================================================================ TEST check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18 TESTING: check from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:18) Checks for "header", and defines HAVE_"header" if found Checking for header: dlfcn.h sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 3 "conftest.c" 2 Defined HAVE_DLFCN_H to 1 in config.headers ================================================================================ TEST checkRecursiveMacros from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:125 TESTING: checkRecursiveMacros from config.headers(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/headers.py:125) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: ================================================================================ TEST check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67 TESTING: check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67) Checks that the library "libName" contains "funcName", and if it does adds "libName" to $LIBS and defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function dlopen in library dl sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl Executing: gcc -o conftest -Wall conftest.o -ldl sh: Defined HAVE_LIBDL to 1 in config.libraries ================================================================================ TEST check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67 TESTING: check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67) Checks that the library "libName" contains "funcName", and if it does adds "libName" to $LIBS and defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function socket in library ['socket', 'nsl'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -lsocket -lnsl Executing: gcc -o conftest -Wall conftest.o -ldl -lsocket -lnsl sh: Possible ERROR while running linker: /usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -ldl -lsocket -lnsl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); int main() { socket() ; return 0; } ================================================================================ TEST check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67 TESTING: check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67) Checks that the library "libName" contains "funcName", and if it does adds "libName" to $LIBS and defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function dlopen in library dl sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl sh: Defined HAVE_LIBDL to 1 in config.libraries ================================================================================ TEST check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67 TESTING: check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67) Checks that the library "libName" contains "funcName", and if it does adds "libName" to $LIBS and defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function dlopen in library dl sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl sh: Defined HAVE_LIBDL to 1 in config.libraries ================================================================================ TEST check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67 TESTING: check from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:67) Checks that the library "libName" contains "funcName", and if it does adds "libName" to $LIBS and defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function dlopen in library dl sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_LIBDL to 1 in config.libraries ================================================================================ TEST checkMath from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:242 TESTING: checkMath from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:242) Check for sin() in libm, the math library Checking for function sin in library sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: ================================================================================ TEST checkSuffix from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:248 TESTING: checkSuffix from config.libraries(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/libraries.py:248) (Belongs in config.libraries) Determine the suffix used for libraries Checking for function GetCurrentProcess in library ['kernel32.lib'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl kernel32.lib Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl kernel32.lib sh: Possible ERROR while running linker: gcc: kernel32.lib: No such file or directory output: ret = 256 error message = {gcc: kernel32.lib: No such file or directory } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl kernel32.lib Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int __stdcall GetCurrentProcess(void); int main() { GetCurrentProcess() ; return 0; } Checking for function GetCurrentProcess in library ['PSDK/kernel32.lib'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl PSDK/kernel32.lib Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl PSDK/kernel32.lib sh: Possible ERROR while running linker: gcc: PSDK/kernel32.lib: No such file or directory output: ret = 256 error message = {gcc: PSDK/kernel32.lib: No such file or directory } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl PSDK/kernel32.lib Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int __stdcall GetCurrentProcess(void); int main() { GetCurrentProcess() ; return 0; } Substituting LIB_SUFFIX with a in config.libraries Substituting LDFLAGS with LDFLAGS() in config.libraries Substituting LIBS with LIBS( -ldl -ldl -ldl -ldl ) in config.libraries ================================================================================ TEST configureLibrary from PETSc.packages.Umfpack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Umfpack.py:106 TESTING: configureLibrary from PETSc.packages.Umfpack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Umfpack.py:106) Find a installation and check if it can work with PETSc ================================================================================== Must specify either a library or installation root directory for UMFPACK Could not find a functional Umfpack or AMD Substituting UMFPACK_INCLUDE with in PETSc.packages.Umfpack Substituting UMFPACK_LIB with in PETSc.packages.Umfpack ================================================================================ TEST configureLibrary from PETSc.packages.Superlu(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Superlu.py:87 TESTING: configureLibrary from PETSc.packages.Superlu(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/Superlu.py:87) Find a installation and check if it can work with PETSc ================================================================================== Must specify either a library or installation root directory for SUPERLU Could not find a functional Superlu Substituting SUPERLU_INCLUDE with in PETSc.packages.Superlu Substituting SUPERLU_LIB with in PETSc.packages.Superlu ================================================================================ TEST configurePIC from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:407 TESTING: configurePIC from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:407) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Trying C compiler flag -PIC sh: gcc -c -o conftest.o -Wall -PIC conftest.c Executing: gcc -c -o conftest.o -Wall -PIC conftest.c sh: Possible ERROR while running compiler: error message = {gcc: unrecognized option '-PIC' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -PIC Trying C compiler flag -fPIC sh: gcc -c -o conftest.o -Wall -fPIC conftest.c Executing: gcc -c -o conftest.o -Wall -fPIC conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -fPIC Trying C compiler flag -KPIC sh: gcc -c -o conftest.o -Wall -KPIC conftest.c Executing: gcc -c -o conftest.o -Wall -KPIC conftest.c sh: Possible ERROR while running compiler: error message = {gcc: unrecognized option '-KPIC' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C compiler flag -KPIC Trying C++ compiler flag -PIC sh: g++ -c -o conftest.o -Wall -PIC conftest.cc Executing: g++ -c -o conftest.o -Wall -PIC conftest.cc sh: Possible ERROR while running compiler: error message = {g++: unrecognized option '-PIC' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C++ compiler flag -PIC Trying C++ compiler flag -fPIC sh: g++ -c -o conftest.o -Wall -fPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -fPIC conftest.cc sh: Possible ERROR while running compiler: error message = {conftest.cc:1: warning: -fPIC ignored for target (all code is position independent) } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C++ compiler flag -fPIC Trying C++ compiler flag -KPIC sh: g++ -c -o conftest.o -Wall -KPIC conftest.cc Executing: g++ -c -o conftest.o -Wall -KPIC conftest.cc sh: Possible ERROR while running compiler: error message = {g++: unrecognized option '-KPIC' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejected C++ compiler flag -KPIC Trying F77 compiler flag -PIC sh: gfortran -c -o conftest.o -PIC conftest.F Executing: gfortran -c -o conftest.o -PIC conftest.F sh: Possible ERROR while running compiler: error message = {gfortran: unrecognized option '-PIC' } Source: program main end Rejected F77 compiler flag -PIC Trying F77 compiler flag -fPIC sh: gfortran -c -o conftest.o -fPIC conftest.F Executing: gfortran -c -o conftest.o -fPIC conftest.F sh: Possible ERROR while running compiler: error message = {cc1: warning: -fPIC ignored for target (all code is position independent) f951: warning: -fPIC ignored for target (all code is position independent) } Source: program main end Rejected F77 compiler flag -fPIC Trying F77 compiler flag -KPIC sh: gfortran -c -o conftest.o -KPIC conftest.F Executing: gfortran -c -o conftest.o -KPIC conftest.F sh: Possible ERROR while running compiler: error message = {gfortran: unrecognized option '-KPIC' } Source: program main end Rejected F77 compiler flag -KPIC ================================================================================ TEST configureLibrary from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:325 TESTING: configureLibrary from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:325) Downloading fblaslapack Found fblaslapack, do not need to download Do not need to compile fblaslapack, already compiled ================================================================================ Checking for a functional BLAS and LAPACK in Downloaded BLAS/LAPACK library ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:67 TESTING: checkLib from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:67) Checking for BLAS and LAPACK symbols Checking for function ddot in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libfblas.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFBLAS to 1 in config.libraries Checking for function dgetrs in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFLAPACK to 1 in config.libraries Checking for function dgesvd in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFLAPACK to 1 in config.libraries Checking for function dgeev in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFLAPACK to 1 in config.libraries Checking for function dgetrf in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFLAPACK to 1 in config.libraries Checking for function dpotrf in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFLAPACK to 1 in config.libraries Checking for function dgetrs in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFLAPACK to 1 in config.libraries Checking for function dpotrs in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBFLAPACK to 1 in config.libraries ================================================================================ TEST configureESSL from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:375 TESTING: configureESSL from PETSc.packages.BlasLapack(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/BlasLapack.py:375) Checking for function iessl in library ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin/libflapack.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x17): undefined reference to `_iessl' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x17): undefined reference to `_iessl' collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iessl(); int main() { iessl() ; return 0; } Substituting BLAS_DIR with ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin'] in PETSc.packages.BlasLapack Substituting BLAS_LIB with -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lfblas in PETSc.packages.BlasLapack Substituting LAPACK_DIR with ['/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin'] in PETSc.packages.BlasLapack Substituting LAPACK_LIB with -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -L/home/Administrator/soft/petsc-2.2.1/packages/fblaslapack/cygwin -lflapack in PETSc.packages.BlasLapack ================================================================================ TEST checkMemcmp from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:65 TESTING: checkMemcmp from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:65) Check for 8-bit clean memcmp sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: ================================================================================ TEST checkSysinfo from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:72 TESTING: checkSysinfo from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:72) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x17): undefined reference to `_sysinfo' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x17): undefined reference to `_sysinfo' collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:95 TESTING: checkVPrintf from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:95) Checking for function vprintf sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function ‘vprintf’ } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_VPRINTF to 1 in config.functions sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: ================================================================================ TEST checkSignalHandlerType from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:102 TESTING: checkSignalHandlerType from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:102) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: Defined SIGNAL_CAST to in config.functions ================================================================================ TEST checkFreeReturnType from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:112 TESTING: checkFreeReturnType from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:112) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function ‘main’: conftest.c:6: error: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_ACCESS to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE__ACCESS to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_CLOCK to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_DRAND48 to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_GETCWD to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE__GETCWD to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_GETDOMAINNAME to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_GETHOSTNAME to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_GETPWUID to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_GETTIMEOFDAY to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_GETRUSAGE to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_GETWD to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_MEMALIGN to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function ‘memmove’ } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_MEMMOVE to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_MKSTEMP to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_POPEN to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x17): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x17): undefined reference to `_PXFGETARG' collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_RAND to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_READLINK to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_REALPATH to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x17): undefined reference to `_sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x17): undefined reference to `_sbreak' collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_SIGACTION to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_SIGNAL to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_SIGSET to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_SLEEP to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE__SLEEP to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_SOCKET to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_TIMES to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_UNAME to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function ‘snprintf’ } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_SNPRINTF to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE__SNPRINTF to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x17): undefined reference to `__fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x17): undefined reference to `__fullpath' collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_LSEEK to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE__LSEEK to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_TIME to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function ‘fork’ } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_fork) || defined (__stub___fork) choke me #else fork(); #endif ; return 0; } sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_FORK to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Possible ERROR while running linker: conftest.o:conftest.c:(.text+0x17): undefined reference to `_stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.c:(.text+0x17): undefined reference to `_stricmp' collect2: ld returned 1 exit status } in gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function ‘bzero’ } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_BZERO to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlopen sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_DLOPEN to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlsym sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_DLSYM to 1 in config.functions ================================================================================ TEST check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18 TESTING: check from config.functions(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/functions.py:18) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function erf sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function ‘erf’ } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char erf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char erf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_erf) || defined (__stub___erf) choke me #else erf(); #endif ; return 0; } sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_ERF to 1 in config.functions ================================================================================ TEST checkSizeTypes from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:36 TESTING: checkSizeTypes from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:36) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function ‘main’: conftest.c:12: warning: unused variable ‘a’ } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:41 TESTING: checkFileTypes from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:41) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function ‘main’: conftest.c:12: warning: unused variable ‘a’ } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function ‘main’: conftest.c:12: warning: unused variable ‘a’ } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkPID from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:47 TESTING: checkPID from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:47) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function ‘main’: conftest.c:12: warning: unused variable ‘a’ } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:51 TESTING: checkUID from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:51) Checks for uid_t and gid_t, and defines them if necessary sh: gcc -E conftest.c Executing: gcc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:58 TESTING: checkSignal from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:58) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Defined RETSIGTYPE to void in config.types ================================================================================ TEST checkComplex from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:79 TESTING: checkComplex from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:79) Check for complex numbers in namespace std, and if --enable-complex is given, defines PETSC_USE_COMPLEX if they are present sh: g++ -c -o conftest.o -Wall conftest.cc Executing: g++ -c -o conftest.o -Wall conftest.cc sh: sh: g++ -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: g++ -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Defined HAVE_COMPLEX to 1 in config.types ================================================================================ TEST checkFortranStar from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:94 TESTING: checkFortranStar from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:94) Checks whether integer*4, etc. is handled in Fortran, and if not defines MISSING_FORTRANSTAR sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: ================================================================================ TEST checkFortranDReal from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:103 TESTING: checkFortranDReal from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:103) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL sh: gfortran -c -o conftest.o conftest.F Executing: gfortran -c -o conftest.o conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F:2.1: double precision d d = dreal(3.0) 1 Error: Non-numeric character in statement label at (1) conftest.F:2.29: double precision d d = dreal(3.0) 1 Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4) } Source: program main double precision d d = dreal(3.0) end Defined MISSING_DREAL to 1 in config.types ================================================================================ TEST checkConst from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:111 TESTING: checkConst from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:111) Checks for working const, and if not found defines it to empty string sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: ================================================================================ TEST checkEndian from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:167 TESTING: checkEndian from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:167) If the machine is bgi endian, defines WORDS_BIGENDIAN sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function ‘main’: conftest.c:9: error: ‘not’ undeclared (first use in this function) conftest.c:9: error: (Each undeclared identifier is reported only once conftest.c:9: error: for each function it appears in.) conftest.c:9: error: expected ‘;’ before ‘big’ } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207 TESTING: checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined SIZEOF_VOID_P to 4 in config.types ================================================================================ TEST checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207 TESTING: checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined SIZEOF_SHORT to 2 in config.types ================================================================================ TEST checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207 TESTING: checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined SIZEOF_INT to 4 in config.types ================================================================================ TEST checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207 TESTING: checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined SIZEOF_LONG to 4 in config.types ================================================================================ TEST checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207 TESTING: checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined SIZEOF_LONG_LONG to 8 in config.types ================================================================================ TEST checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207 TESTING: checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined SIZEOF_FLOAT to 4 in config.types ================================================================================ TEST checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207 TESTING: checkSizeof from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:207) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined SIZEOF_DOUBLE to 8 in config.types ================================================================================ TEST checkBitsPerByte from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:232 TESTING: checkBitsPerByte from config.types(/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/types.py:232) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl sh: Executing: ./conftest.exe sh: ./conftest.exe Executing: ./conftest.exe sh: Defined BITS_PER_BYTE to 8 in config.types ================================================================================ TEST configureLibrary from PETSc.packages.MPI(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/MPI.py:409 TESTING: configureLibrary from PETSc.packages.MPI(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/MPI.py:409) Find all working MPI libraries and then choose one Downloading MPICH MPICH already downloaded, no need to ftp Have to rebuild MPICH oldargs = new args --prefix=/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin -cc="gcc -Wall" -c++="g++ -Wall " -fc="gfortran " --without-mpe -rsh=ssh --with-device=ch_p4 sh: cd /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1;./configure --prefix=/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin -cc="gcc -Wall" -c++="g++ -Wall " -fc="gfortran " --without-mpe -rsh=ssh --with-device=ch_p4 Executing: cd /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1;./configure --prefix=/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin -cc="gcc -Wall" -c++="g++ -Wall " -fc="gfortran " --without-mpe -rsh=ssh --with-device=ch_p4 sh: Configuring with args --prefix=/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin -cc=gcc -Wall -c++=g++ -Wall -fc=gfortran --without-mpe -rsh=ssh --with-device=ch_p4 Configuring MPICH Version 1.2.7 (release) of : 2005/11/04 11:54:51 Use the environment variable CC instead of configure argument -cc="gcc -Wall" Compiling C++ interface with g++ -Wall Use the environment variable FC instead of configure argument -fc="gfortran " Make will not build MPE routines Use the environment variable RSHCOMMAND instead of configure argument -rsh=ssh checking whether filesystem respects... ... You should register your copy of MPICH with us by sending mail *# to majordomo@mcs.anl.gov containing the message *# subscribe mpi-users *# This will allow us to notify you of new releases of MPICH. *# *# You can also check the MPICH home page at *# http://www.mcs.anl.gov/mpi/mpich *# ---< Old style arguments to configure were found: Use the environment variable CC instead of configure argument -cc="gcc -Wall" Use the environment variable FC instead of configure argument -fc="gfortran " Use the environment variable RSHCOMMAND instead of configure argument -rsh=ssh Configuration completed. sh: cd /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1;make; make install Executing: cd /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1;make; make install sh: rm -rf serv_p4 *.o clientlib.a lclient cleaning directory mpi-io cleaning directory adio/common cleaning directory mpi-io/glue/mpich1 cleaning directory adio/ad_testfs cleaning directory adio/ad_ufs cleaning directory adio/ad_nfs cleaning directory mpi-io/fortran cleaning directory test rm -f .P* PI* *.o rm -f simple perf async coll_test coll_perf misc file_info excl large_array atomicity noncontig i_noncontig noncontig_coll split_coll shared_fp large_file psimple error status noncontig_coll2 fcoll_test fperf fmisc pfcoll_test cleaning src/pt2pt rm -f *.o *~ /home/Administr... ... strator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/bin/mpicc -o cpi cpi.o -lm /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/bin/mpicc -c simpleio.c /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/bin/mpicc -o simpleio simpleio.o rm -f *.o *~ PI* cpi pi3 simpleio hello++ pi3f90 cpilog rm -rf SunWS_cache ii_files pi3f90.f pi3p cpip *.ti *.ii installed MPICH in /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin /home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/sbin/mpiuninstall may be used to remove the installation. ================================================================================ Checking for a functional MPI in Downloaded MPICH Checking for function MPI_Init in library ['/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib/libmpich.a', '/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib/libpmpich.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBMPICH to 1 in config.libraries Defined HAVE_LIBPMPICH to 1 in config.libraries Checking for function MPI_Comm_create in library ['/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib/libmpich.a', '/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib/libpmpich.a'] sh: gcc -c -o conftest.o -Wall conftest.c Executing: gcc -c -o conftest.o -Wall conftest.c sh: sh: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 Executing: gcc -o conftest -Wall conftest.o -ldl -ldl -ldl -ldl -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 sh: Defined HAVE_LIBMPICH to 1 in config.libraries Defined HAVE_LIBPMPICH to 1 in config.libraries sh: gcc -E -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.c Executing: gcc -E -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include/mpi.h" 1 # 50 "/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include/mpi.h" typedef int MPI_Datatype; # 102 "/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Op; # 173 "/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include/mpi.h" typedef... ... I_Info *); MPI_Fint PMPI_Info_c2f(MPI_Info); MPI_Info PMPI_Info_f2c(MPI_Fint); int PMPI_Init(int *, char ***); int PMPI_Init_thread( int *, char ***, int, int * ); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); # 668 "/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include/mpi.h" int PMPI_Pcontrol(const int, ...); int PMPI_Status_set_cancelled( MPI_Status *, int ); int PMPI_Status_set_elements( MPI_Status *, MPI_Datatype, int ); # 3 "conftest.c" 2 ================================================================================ TEST checkWorkingLink from PETSc.packages.MPI(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/MPI.py:95 TESTING: checkWorkingLink from PETSc.packages.MPI(/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/MPI.py:95) Checking that we can link an MPI executable sh: gcc -c -o conftest.o -Wall -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.c Executing: gcc -c -o conftest.o -Wall -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.c sh: sh: gcc -o conftest -Wall -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.o -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 -ldl -ldl -ldl -ldl Executing: gcc -o conftest -Wall -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.o -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 -ldl -ldl -ldl -ldl sh: MPI can link with C sh: g++ -c -o conftest.o -Wall -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.cc Executing: g++ -c -o conftest.o -Wall -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.cc sh: sh: g++ -o conftest -Wall conftest.o -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 -ldl -ldl -ldl -ldl Executing: g++ -o conftest -Wall conftest.o -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 -ldl -ldl -ldl -ldl sh: MPI can link with C++ sh: gfortran -c -o conftest.o -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.F Executing: gfortran -c -o conftest.o -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.F sh: sh: gfortran -o conftest -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.o -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 -ldl -ldl -ldl -ldl Executing: gfortran -o conftest -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.o -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 -ldl -ldl -ldl -ldl sh: Possible ERROR while running linker: conftest.o:conftest.F:(.text+0x2f): undefined reference to `_mpi_comm_size_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o:conftest.F:(.text+0x2f): undefined reference to `_mpi_comm_size_' collect2: ld returned 1 exit status } in gfortran -o conftest -I/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/include conftest.o -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lmpich -Wl,-rpath,/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -L/home/Administrator/soft/petsc-2.2.1/packages/mpich-1.2.7p1/cygwin/lib -lpmpich -lgfortranbegin -lgfortran -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../../i686-pc-cygwin/bin/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgcc_s -lcygwin -luser32 -ladvapi32 -lshell32 -ldl -ldl -ldl -ldl Source: program main integer comm,size,ierr call MPI_Comm_size(comm, size, ierr) end MPI cannot link Fortran using MPI_Comm_size(), but can link C, which indicates a problem with the MPI installation Run with -with-fc=0 if you do not wish to use Fortran***** Unable to configure with given options ***** (see configure.log for full details): Downloaded MPICH could not be used. ****************************************************** File "./config/configure.py", line 107, in petsc_configure framework.configure(out = sys.stdout) File "/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/framework.py", line 528, in configure child.configure() File "/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/MPI.py", line 533, in configure self.executeTest(self.configureLibrary) File "/home/Administrator/soft/petsc-2.2.1/python/BuildSystem/config/base.py", line 79, in executeTest return apply(test, args) File "/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/MPI.py", line 415, in configureLibrary for (name, libraryGuesses, includeGuesses) in self.generateGuesses(): File "/home/Administrator/soft/petsc-2.2.1/python/PETSc/packages/MPI.py", line 204, in generateGuesses raise RuntimeError('Downloaded MPICH could not be used.\n')