Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Thu Dec 15 16:44:54 2005 Configure Options: --with-mpi-dir=/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test --with-blas-lapack-dir=/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test --with-shared=1 --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions Working directory: /sandbox/petsc/petsc-dev Python version: 2.3+ (#1, Oct 1 2003, 07:18:17) [GCC 3.3.1 (SuSE Linux)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/sandbox/petsc/petsc-dev/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/sandbox/petsc/petsc-dev/python/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/sandbox/petsc/petsc-dev/python/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/sandbox/petsc/petsc-dev/python/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureBitKeeper from config.sourceControl(/sandbox/petsc/petsc-dev/python/BuildSystem/config/sourceControl.py:23) TESTING: configureBitKeeper from config.sourceControl(/sandbox/petsc/petsc-dev/python/BuildSystem/config/sourceControl.py:23) Find the BitKeeper executable Checking for program /opt/kde3/bin/bk...not found Checking for program /opt/gnome/bin/bk...not found Checking for program /usr/games/bk...not found Checking for program /homes/petsc/bin/bk...not found Checking for program /usr/bin/X11/bk...not found Checking for program /usr/bin/bk...not found Checking for program /bin/bk...not found Checking for program /usr/sbin/bk...not found Checking for program /sbin/bk...not found Checking for program ./bk...not found Checking for program /home/petsc/soft/linux-suse-amd64/bitkeeper/bk...found Defined make macro "BK" to "bk" ================================================================================ TEST configureCVS from config.sourceControl(/sandbox/petsc/petsc-dev/python/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(/sandbox/petsc/petsc-dev/python/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /opt/kde3/bin/cvs...not found Checking for program /opt/gnome/bin/cvs...not found Checking for program /usr/games/cvs...not found Checking for program /homes/petsc/bin/cvs...not found Checking for program /usr/bin/X11/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/sandbox/petsc/petsc-dev/python/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(/sandbox/petsc/petsc-dev/python/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /opt/kde3/bin/svn...not found Checking for program /opt/gnome/bin/svn...not found Checking for program /usr/games/svn...not found Checking for program /homes/petsc/bin/svn...not found Checking for program /usr/bin/X11/svn...not found Checking for program /usr/bin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/sbin/svn...not found Checking for program /sbin/svn...not found Checking for program ./svn...not found Checking for program /home/petsc/soft/linux-suse-amd64/bitkeeper/svn...not found Checking for program /home/petsc/soft/linux-suse-amd64/rsync/bin/svn...not found Checking for program /sandbox/petsc/soft/sunstudio10u1/bin/svn...not found Checking for program /homes/petsc/svn...not found ================================================================================ TEST configureMake from PETSc.utilities.Make(/sandbox/petsc/petsc-dev/python/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/sandbox/petsc/petsc-dev/python/PETSc/utilities/Make.py:21) Check various things about make Checking for program /opt/kde3/bin/make...not found Checking for program /opt/gnome/bin/make...not found Checking for program /usr/games/make...not found Checking for program /homes/petsc/bin/make...not found Checking for program /usr/bin/X11/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib64/ld-linux-x86-64.so.2 librt.so.1 clock_gettime _Jv_RegisterClasses __gmon_start__ libc.so.6 strcpy waitpid getloadavg __strtod_internal stdout getlogin sigemptyset strerror memmove getopt_long getenv __rawmemchr __strtol_internal getpid qsort fgets memcpy setvbuf glob dup2 feof malloc remove optarg opterr readdir fflush fclose lseek sigaddset abort pipe strrchr __ctype_tolower_loc calloc kill ctime strcat dcgettext chdir bsd_signal optind stdin wait ferror strncmp unlink fdopen realloc __strdup sscanf sigaction fread gettimeofday localtime memset opendir __assert_fail strcmp getcwd strsi... ... line %lu) $(subst ,,%s) # Variables # variable set hash-table stats: 3.80 x86_64-unknown-linux-gnu $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # %u `vpath' search paths. # No `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %ld bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh #;"*?[]&|<>(){}$`^~ -c Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMkdir from PETSc.utilities.programs(/sandbox/petsc/petsc-dev/python/PETSc/utilities/programs.py:21) TESTING: configureMkdir from PETSc.utilities.programs(/sandbox/petsc/petsc-dev/python/PETSc/utilities/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/kde3/bin/mkdir...not found Checking for program /opt/gnome/bin/mkdir...not found Checking for program /usr/games/mkdir...not found Checking for program /homes/petsc/bin/mkdir...not found Checking for program /usr/bin/X11/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from PETSc.utilities.programs(/sandbox/petsc/petsc-dev/python/PETSc/utilities/programs.py:39) TESTING: configurePrograms from PETSc.utilities.programs(/sandbox/petsc/petsc-dev/python/PETSc/utilities/programs.py:39) Check for the programs needed to build and run PETSc Checking for program /opt/kde3/bin/sh...not found Checking for program /opt/gnome/bin/sh...not found Checking for program /usr/games/sh...not found Checking for program /homes/petsc/bin/sh...not found Checking for program /usr/bin/X11/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /opt/kde3/bin/sed...not found Checking for program /opt/gnome/bin/sed...not found Checking for program /usr/games/sed...not found Checking for program /homes/petsc/bin/sed...not found Checking for program /usr/bin/X11/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Checking for program /opt/kde3/bin/mv...not found Checking for program /opt/gnome/bin/mv...not found Checking for program /usr/games/mv...not found Checking for program /homes/petsc/bin/mv...not found Checking for program /usr/bin/X11/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/kde3/bin/cp...not found Checking for program /opt/gnome/bin/cp...not found Checking for program /usr/games/cp...not found Checking for program /homes/petsc/bin/cp...not found Checking for program /usr/bin/X11/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/kde3/bin/grep...not found Checking for program /opt/gnome/bin/grep...not found Checking for program /usr/games/grep...not found Checking for program /homes/petsc/bin/grep...not found Checking for program /usr/bin/X11/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /opt/kde3/bin/rm...not found Checking for program /opt/gnome/bin/rm...not found Checking for program /usr/games/rm...not found Checking for program /homes/petsc/bin/rm...not found Checking for program /usr/bin/X11/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/kde3/bin/diff...not found Checking for program /opt/gnome/bin/diff...not found Checking for program /usr/games/diff...not found Checking for program /homes/petsc/bin/diff...not found Checking for program /usr/bin/X11/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /homes/petsc/ps...not found Checking for program /opt/kde3/bin/gzip...not found Checking for program /opt/gnome/bin/gzip...not found Checking for program /usr/games/gzip...not found Checking for program /homes/petsc/bin/gzip...not found Checking for program /usr/bin/X11/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/sandbox/petsc/petsc-dev/python/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/sandbox/petsc/petsc-dev/python/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /opt/kde3/bin/gdb...not found Checking for program /opt/gnome/bin/gdb...not found Checking for program /usr/games/gdb...not found Checking for program /homes/petsc/bin/gdb...not found Checking for program /usr/bin/X11/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /opt/kde3/bin/dbx...not found Checking for program /opt/gnome/bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /homes/petsc/bin/dbx...not found Checking for program /usr/bin/X11/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program ./dbx...not found Checking for program /home/petsc/soft/linux-suse-amd64/bitkeeper/dbx...not found Checking for program /home/petsc/soft/linux-suse-amd64/rsync/bin/dbx...not found Checking for program /sandbox/petsc/soft/sunstudio10u1/bin/dbx...found Defined make macro "DBX" to "/sandbox/petsc/soft/sunstudio10u1/bin/dbx" Checking for program /opt/kde3/bin/xdb...not found Checking for program /opt/gnome/bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /homes/petsc/bin/xdb...not found Checking for program /usr/bin/X11/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program ./xdb...not found Checking for program /home/petsc/soft/linux-suse-amd64/bitkeeper/xdb...not found Checking for program /home/petsc/soft/linux-suse-amd64/rsync/bin/xdb...not found Checking for program /sandbox/petsc/soft/sunstudio10u1/bin/xdb...not found Checking for program /homes/petsc/xdb...not found ================================================================================ TEST configureScalarType from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:32) TESTING: configureScalarType from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:32) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:42) TESTING: configurePrecision from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:42) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:65) TESTING: configureCLanguage from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:65) Choose between C and C++ bindings Turning off C++ support Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:87) TESTING: configureExternC from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:87) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:93) TESTING: configureFortranLanguage from PETSc.utilities.languages(/sandbox/petsc/petsc-dev/python/PETSc/utilities/languages.py:93) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/petscdir.py:35) TESTING: configureDirectories from PETSc.utilities.petscdir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/petscdir.py:35) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 2 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 42 #define PETSC_VERSION_DATE "April, 26, 2005" #define PETSC_VERSION_PATCH_DATE "November, 22, 2005" #define PETSC_VERSION_BK "unknown" Defined make macro "DIR" to "/sandbox/petsc/petsc-dev" Defined "DIR" to "/sandbox/petsc/petsc-dev" sh: /bin/sh /sandbox/petsc/petsc-dev/bin/config/config.guess Executing: /bin/sh /sandbox/petsc/petsc-dev/bin/config/config.guess sh: x86_64-unknown-linux-gnu sh: /bin/sh /sandbox/petsc/petsc-dev/bin/config/config.sub x86_64-unknown-linux-gnu Executing: /bin/sh /sandbox/petsc/petsc-dev/bin/config/config.sub x86_64-unknown-linux-gnu sh: x86_64-unknown-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/petscdir.py:113) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/petscdir.py:113) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/petscdir.py:120) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/petscdir.py:120) This is a BitKeeper clone ================================================================================ TEST configureETags from PETSc.utilities.Etags(/sandbox/petsc/petsc-dev/python/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/sandbox/petsc/petsc-dev/python/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise WARNING: ETags files have not been created Checking for program /opt/kde3/bin/etags...not found Checking for program /opt/gnome/bin/etags...not found Checking for program /usr/games/etags...not found Checking for program /homes/petsc/bin/etags...not found Checking for program /usr/bin/X11/etags...not found Checking for program /usr/bin/etags...not found Checking for program /bin/etags...not found Checking for program /usr/sbin/etags...not found Checking for program /sbin/etags...not found Checking for program ./etags...not found Checking for program /home/petsc/soft/linux-suse-amd64/bitkeeper/etags...not found Checking for program /home/petsc/soft/linux-suse-amd64/rsync/bin/etags...not found Checking for program /sandbox/petsc/soft/sunstudio10u1/bin/etags...found Defined make macro "ETAGS" to "/sandbox/petsc/soft/sunstudio10u1/bin/etags" Running /sandbox/petsc/soft/sunstudio10u1/bin/etags to generate TAGS files sh: maint/generateetags.py Executing: maint/generateetags.py sh: *******Error generating etags files: Could not execute 'maint/generateetags.py': Traceback (most recent call last): File "maint/generateetags.py", line 121, in ? main() File "maint/generateetags.py", line 112, in main os.path.walk(os.getcwd(),processDir,tagfile) File "/usr/lib64/python2.3/posixpath.py", line 282, in walk func(arg, top, names) File "maint/generateetags.py", line 77, in processDir if newls: createTags(tagfile,dirname,newls) File "maint/generateetags.py", line 47, in createTags raise RuntimeError("Error running etags "+output) RuntimeError: Error running etags etags: error while loading shared libraries: libdb-4.2.so: cannot open shared object file: No such file or directory ******* ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/sandbox/petsc/petsc-dev/python/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/sandbox/petsc/petsc-dev/python/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "/home/petsc/datafiles" ================================================================================ TEST checkVendor from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:194) TESTING: checkVendor from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:194) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:204) TESTING: checkInitialFlags from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:204) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized executableFlags to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:308) TESTING: checkCCompiler from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:308) Locate a functional C compiler Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc...found Defined make macro "CC" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc" Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest conftest.o sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:357) TESTING: checkCPreprocessor from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:357) Locate a functional C preprocessor Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc...found Defined make macro "CPP" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E" Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... len (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:456) TESTING: checkCxxCompiler from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:456) Locate a functional Cxx compiler ================================================================================ TEST checkFortranCompiler from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:612) TESTING: checkFortranCompiler from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:612) Locate a functional Fortran compiler Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif90...not found Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77...found Defined make macro "FC" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77" Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest conftest.o sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:647) TESTING: checkFortranComments from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:647) Make sure fortran comment "!" works Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F sh: Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkBrokenMpif90 from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:656) TESTING: checkBrokenMpif90 from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:656) mpif90 from mpich1 and older c-preprocessor combinations misbehave Pushing language FC Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:696) TESTING: checkPIC from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:696) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -PIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -PIC conftest.o sh: Possible ERROR while running linker: gcc: unrecognized option `-PIC' output: error message = {gcc: unrecognized option `-PIC' } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -PIC conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting C linker flag -PIC due to gcc: unrecognized option `-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Added C compiler flag -fPIC Popping language C Pushing language FC Trying FC compiler flag -PIC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -PIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -PIC conftest.o sh: Possible ERROR while running linker: g77: unrecognized option `-PIC' output: error message = {g77: unrecognized option `-PIC' } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -PIC conftest.o Source: program main end Rejecting FC linker flag -PIC due to g77: unrecognized option `-PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC conftest.F sh: Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:736) TESTING: checkLargeFileIO from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:736) ================================================================================ TEST checkArchiver from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:826) TESTING: checkArchiver from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:826) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/kde3/bin/ar...not found Checking for program /opt/gnome/bin/ar...not found Checking for program /usr/games/ar...not found Checking for program /homes/petsc/bin/ar...not found Checking for program /usr/bin/X11/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/kde3/bin/ranlib...not found Checking for program /opt/gnome/bin/ranlib...not found Checking for program /usr/games/ranlib...not found Checking for program /homes/petsc/bin/ranlib...not found Checking for program /usr/bin/X11/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: ret = 2304 error message = {/usr/bin/ranlib: -c: No such file or directory } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Checking for program /opt/kde3/bin/ar...not found Checking for program /opt/gnome/bin/ar...not found Checking for program /usr/games/ar...not found Checking for program /homes/petsc/bin/ar...not found Checking for program /usr/bin/X11/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/kde3/bin/ranlib...not found Checking for program /opt/gnome/bin/ranlib...not found Checking for program /usr/games/ranlib...not found Checking for program /homes/petsc/bin/ranlib...not found Checking for program /usr/bin/X11/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -L. -lconf1 Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:922) TESTING: checkSharedLinker from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:922) Check that the linker can produce shared libraries Checking shared linker /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc using flags ['-shared'] Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc...found Defined make macro "LD_SHARED" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc" sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -shared -fPIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -shared -fPIC conftest.o sh: Valid C linker flag -shared sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC conftest.o sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -L. -lconftest Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -L. -lconftest sh: Using shared linker /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc with flags ['-shared'] and library extension so sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:997) TESTING: checkSharedLinkerPaths from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:997) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Trying C linker flag -Wl,-rpath, sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -Wl,-rpath,/sandbox/petsc/petsc-dev -fPIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -Wl,-rpath,/sandbox/petsc/petsc-dev -fPIC conftest.o sh: Valid C linker flag -Wl,-rpath,/sandbox/petsc/petsc-dev Popping language C Pushing language FC Trying FC linker flag -Wl,-rpath, sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -Wl,-rpath,/sandbox/petsc/petsc-dev -fPIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -Wl,-rpath,/sandbox/petsc/petsc-dev -fPIC conftest.o sh: Valid FC linker flag -Wl,-rpath,/sandbox/petsc/petsc-dev Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:1023) TESTING: checkLibC from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:1023) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC conftest.o Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC conftest.o sh: Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:1065) TESTING: checkDynamicLinker from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:1065) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc-li... ... _64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 45 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; # 71 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) ; # 157 "/usr/include/dlfcn.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc using flags ['-shared'] Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc" sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -shared -fPIC conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -shared -fPIC conftest.o -ldl sh: Valid C linker flag -shared sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC conftest.o -ldl sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC conftest.o -ldl sh: Using dynamic linker /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:1111) TESTING: output from config.setCompilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/setCompilers.py:1111) Output module data as defines and substitutions Substituting "CC" with "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "" Substituting "FC" with "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc --version Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc --version sh: gcc (GCC) 3.3.1 (SuSE Linux) Copyright (C) 2003 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc gcc (GCC) 3.3.1 (SuSE Linux) sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -show Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -show sh: gcc -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... anguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall conftest.c sh: Added C compiler flag -Wall Trying C compiler flag -Wshadow sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow conftest.c sh: Added C compiler flag -Wshadow Trying C compiler flag -Wwrite-strings sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings conftest.c sh: Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-long-double sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -Wno-long-double conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {cc1: error: unrecognized option `-Wno-long-double' } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -Wno-long-double due to nonzero status from link Rejecting compiler flag -Wno-long-double due to cc1: error: unrecognized option `-Wno-long-double' PETSc Error: No output file produced Rejected C compiler flag -Wno-long-double sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -show Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -show sh: gcc -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -lmpich sh: gcc --help Executing: gcc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... anguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -g3 sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Added C compiler flag -g3 Popping language C Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 --version Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 --version sh: GNU Fortran (GCC) 3.3.1 (SuSE Linux) Copyright (C) 2002 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. getCompilerVersion: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 GNU Fortran (GCC) 3.3.1 (SuSE Linux) sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -show Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -show sh: g77 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... anguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -Wall sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall conftest.F sh: Added FC compiler flag -Wall sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -show Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -show sh: g77 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -lmpich sh: g77 --help Executing: g77 --help sh: Usage: g77 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... anguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g77. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -g sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/sandbox/petsc/petsc-dev/python/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(/sandbox/petsc/petsc-dev/python/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/sandbox/petsc/petsc-dev/python/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(/sandbox/petsc/petsc-dev/python/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "linux" Defined "ARCH_NAME" to ""linux-gnu-c-real-debug"" Substituting "ARCH" with "linux-gnu-c-real-debug" ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/sandbox/petsc/petsc-dev/python/PETSc/utilities/bmakeDir.py:26) Makes bmake/$PETSC_ARCH if it does not exist Changed persistence directory to bmake/linux-gnu-c-real-debug ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/sandbox/petsc/petsc-dev/python/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/sandbox/petsc/petsc-dev/python/PETSc/utilities/sharedLibraries.py:41) sh: uname -s Executing: uname -s sh: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/sandbox/petsc/petsc-dev/python/PETSc/utilities/sharedLibraries.py:53) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/sandbox/petsc/petsc-dev/python/PETSc/utilities/sharedLibraries.py:53) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc --help Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... anguage> Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkCRestrict from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:125) TESTING: checkCRestrict from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:125) Check for the C restrict keyword Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:5: error: syntax error before "x" } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: unused variable `x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Popping language C Defined "RESTRICT" to " __restrict__" ================================================================================ TEST checkCFormatting from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:237) TESTING: checkCFormatting from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:237) Activate format string checking if using the GNU compilers compilers: Added gcc printf format checking Defined "PRINTF_FORMAT_CHECK(A,B)" to "__attribute__((format (printf, A, B)))" ================================================================================ TEST checkCStaticInline from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:96) TESTING: checkCStaticInline from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:96) Check for C keyword: static inline Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `i' } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:247) TESTING: checkDynamicLoadFlag from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:247) Checks that dlopen() takes RTLD_GLOBAL, and defines PETSC_HAVE_RTLD_GLOBAL if it does sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -ldl sh: Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:146) TESTING: checkCLibraries from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:146) Determines the libraries needed to link with C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -v -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -v -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -ldl sh: mpicc for 1.0.3 Possible ERROR while running linker: Reading specs from /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs Configured with: ../configure --enable-threads=posix --prefix=/usr --with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --enable-languages=c,c++,f77,objc,java,ada --disable-checking --enable-libgcj --with-gxx-include-dir=/usr/include/g++ --with-slibdir=/lib64 --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux Thread model: posix gcc version 3.3.1 (SuSE Linux) /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 conftest.o -ldl -lmpich -lgcc -lgcc_eh -lc -lgcc -lgcc_eh /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o output: mpicc for 1.0.3 error message = {Reading specs from /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs Configured with: ../configure --enable-threads=posix --prefix=/usr --with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --enable-languages=c,c++,f77,objc,java,ada --disable-checking --enable-libgcj --with-gxx-include-dir=/usr/include/g++ --with-slibdir=/lib64 --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux Thread model: posix gcc version 3.3.1 (SuSE Linux) /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 conftest.o -ldl -lmpich -lgcc -lgcc_eh -lc -lgcc -lgcc_eh /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -v -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg mpicc compilers: Unknown arg mpicc compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --with-local-prefix=/usr/local compilers: Unknown arg --with-local-prefix=/usr/local compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --libdir=/usr/lib64 compilers: Unknown arg --libdir=/usr/lib64 compilers: Checking arg --enable-languages=c,c++,f77,objc,java,ada compilers: Unknown arg --enable-languages=c,c++,f77,objc,java,ada compilers: Checking arg --disable-checking compilers: Unknown arg --disable-checking compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --with-gxx-include-dir=/usr/include/g++ compilers: Unknown arg --with-gxx-include-dir=/usr/include/g++ compilers: Checking arg --with-slibdir=/lib64 compilers: Unknown arg --with-slibdir=/lib64 compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg x86_64-suse-linux compilers: Unknown arg x86_64-suse-linux compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.3.1 compilers: Unknown arg 3.3.1 compilers: Checking arg (SuSE compilers: Unknown arg (SuSE compilers: Checking arg Linux) compilers: Unknown arg Linux) compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o compilers: Checking arg -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Found special library: -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Checking arg -L/lib/../lib64 compilers: Found special library: -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Found special library: -L/usr/lib/../lib64 compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -ldl compilers: Found special library: -ldl compilers: Checking arg -lmpich compilers: Found special library: -lmpich compilers: Checking arg -lgcc compilers: Checking arg -lgcc_eh compilers: Found special library: -lgcc_eh compilers: Checking arg -lc compilers: Checking arg -lgcc compilers: Checking arg -lgcc_eh compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:398) TESTING: checkFortranTypeSizes from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:398) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Possible ERROR while running compiler: error message = {conftest.F: In program `main': conftest.F:2: warning: unused variable `variable' } Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:457) TESTING: checkFortranNameMangling from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:457) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Popping language C Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o confc.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o confc.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:490) TESTING: checkFortranNameManglingDouble from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:490) Checks if symbols containing and underscore append and extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Popping language C Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o confc.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o confc.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language FC compilers: Fortran appends and extra underscore to names containing underscores Defined "HAVE_FORTRAN_UNDERSCORE_UNDERSCORE" to "1" ================================================================================ TEST checkFortranPreprocessor from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:500) TESTING: checkFortranPreprocessor from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:500) Determine if Fortran handles preprocessing properly Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g -DPTesting conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g -DPTesting conftest.F sh: Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranLibraries from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:522) TESTING: checkFortranLibraries from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:522) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -V Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -V sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -v -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -v -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: mpif77 for 1.0.3 Possible ERROR while running linker: Driving: g77 -o conftest -v -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -lmpich -lfrtbegin -lg2c -lm -shared-libgcc Reading specs from /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs Configured with: ../configure --enable-threads=posix --prefix=/usr --with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --enable-languages=c,c++,f77,objc,java,ada --disable-checking --enable-libgcj --with-gxx-include-dir=/usr/include/g++ --with-slibdir=/lib64 --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux Thread model: posix gcc version 3.3.1 (SuSE Linux) /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 conftest.o -rpath /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -rpath /lib/../lib64 -rpath /usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lmpich -lfrtbegin -lg2c -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o output: mpif77 for 1.0.3 error message = {Driving: g77 -o conftest -v -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -lmpich -lfrtbegin -lg2c -lm -shared-libgcc Reading specs from /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs Configured with: ../configure --enable-threads=posix --prefix=/usr --with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --enable-languages=c,c++,f77,objc,java,ada --disable-checking --enable-libgcj --with-gxx-include-dir=/usr/include/g++ --with-slibdir=/lib64 --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux Thread model: posix gcc version 3.3.1 (SuSE Linux) /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 conftest.o -rpath /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -rpath /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -rpath /lib/../lib64 -rpath /usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lmpich -lfrtbegin -lg2c -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -v -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: program main end Popping language FC compilers: Checking arg mpif77 compilers: Unknown arg mpif77 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg 1.0.3 compilers: Unknown arg 1.0.3 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg g77 compilers: Unknown arg g77 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Unknown arg -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Checking arg -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Found special library: -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Checking arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Unknown arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Checking arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Unknown arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Checking arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Unknown arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Checking arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Unknown arg -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Found special library: -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Checking arg -Wl,-rpath,/lib/../lib64 compilers: Unknown arg -Wl,-rpath,/lib/../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Found special library: -L/lib/../lib64 compilers: Checking arg -Wl,-rpath,/usr/lib/../lib64 compilers: Unknown arg -Wl,-rpath,/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Found special library: -L/usr/lib/../lib64 compilers: Checking arg -ldl compilers: Found special library: -ldl compilers: Checking arg -lmpich compilers: Found special library: -lmpich compilers: Checking arg -lgcc_eh compilers: Found special library: -lgcc_eh compilers: Checking arg -ldl compilers: Checking arg -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include compilers: Found special include: -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include compilers: Checking arg -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Checking arg -lmpich compilers: Checking arg -lfrtbegin sh: uname -s Executing: uname -s sh: Linux compilers: Checking arg -lg2c compilers: Found special library: -lg2c compilers: Checking arg -lm compilers: Found special library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/specs compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --with-local-prefix=/usr/local compilers: Unknown arg --with-local-prefix=/usr/local compilers: Checking arg --infodir=/usr/share/info compilers: Unknown arg --infodir=/usr/share/info compilers: Checking arg --mandir=/usr/share/man compilers: Unknown arg --mandir=/usr/share/man compilers: Checking arg --libdir=/usr/lib64 compilers: Unknown arg --libdir=/usr/lib64 compilers: Checking arg --enable-languages=c,c++,f77,objc,java,ada compilers: Unknown arg --enable-languages=c,c++,f77,objc,java,ada compilers: Checking arg --disable-checking compilers: Unknown arg --disable-checking compilers: Checking arg --enable-libgcj compilers: Unknown arg --enable-libgcj compilers: Checking arg --with-gxx-include-dir=/usr/include/g++ compilers: Unknown arg --with-gxx-include-dir=/usr/include/g++ compilers: Checking arg --with-slibdir=/lib64 compilers: Unknown arg --with-slibdir=/lib64 compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg x86_64-suse-linux compilers: Unknown arg x86_64-suse-linux compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.3.1 compilers: Unknown arg 3.3.1 compilers: Checking arg (SuSE compilers: Unknown arg (SuSE compilers: Checking arg Linux) compilers: Unknown arg Linux) compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crt1.o compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crti.o compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtbegin.o compilers: Checking arg -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. compilers: Checking arg -rpath compilers: Found -rpath library: /lib/../lib64 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/../lib64 compilers: Checking arg -ldl compilers: Checking arg -lmpich compilers: Checking arg -lgcc_eh compilers: Checking arg -ldl compilers: Checking arg -lmpich compilers: Checking arg -lfrtbegin sh: uname -s Executing: uname -s sh: Linux compilers: Checking arg -lg2c compilers: Checking arg -lm compilers: Found special library: -lm compilers: Checking arg -lgcc_s compilers: Found special library: -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/crtend.o compilers: Checking arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] compilers: Libraries needed to link Fortran main with the C linker: ['-lfrtbegin', '-lfrtbegin'] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C compilers: Check for Intel PEPCF90 library Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lPEPCF90 -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lPEPCF90 -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lPEPCF90 collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lPEPCF90 -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Intel PEPCF90 library does not exist ================================================================================ TEST checkFortran90 from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:814) TESTING: checkFortran90 from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:814) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Fortran 90 feature at (^) unsupported conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:2: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) 1 conftest.F:3: (continued): INTEGER (KIND=int) :: ierr 2 Invalid declaration of or reference to symbol `int' at (2) [initially seen at (1)] } Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Compile failed inside link Fortran compiler does not support F90 Popping language FC ================================================================================ TEST checkFortran90Interface from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:874) TESTING: checkFortran90Interface from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:874) Check for custom F90 interfaces, such as that provided by PETSc ================================================================================ TEST setupFrameworkCompilers from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:937) TESTING: setupFrameworkCompilers from config.compilers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/compilers.py:937) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/sandbox/petsc/petsc-dev/python/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(/sandbox/petsc/petsc-dev/python/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/sandbox/petsc/petsc-dev/python/PETSc/utilities/fortranCPP.py:26) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/sandbox/petsc/petsc-dev/python/PETSc/utilities/fortranCPP.py:26) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<'] Defined make rule ".f.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<'] Defined make rule ".F.a" with dependencies "" and code ['-${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:59) TESTING: checkStdC from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:59) sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 26 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... nt __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 287 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 309 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 379 "/usr/include/string.h" 3 4 # 4 "conftest.c" 2 sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... len (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:92) TESTING: checkStat from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:92) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr... ... stat (__const char *__path, struct stat *__statbuf) { return __xstat (1, __path, __statbuf); } extern __inline__ int lstat (__const char *__path, struct stat *__statbuf) { return __lxstat (1, __path, __statbuf); } extern __inline__ int fstat (int __fd, struct stat *__statbuf) { return __fxstat (1, __fd, __statbuf); } extern __inline__ int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknod (0, __path, __mode, &__dev); } # 408 "/usr/include/sys/stat.h" 3 4 # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:127) TESTING: checkSysWait from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:127) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:149) TESTING: checkTime from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:149) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc-lib/x... ... e.h" 3 4 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 413 "/usr/include/time.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 22 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/in... ... t_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) ; extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) ; extern int utimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) ; extern int futimes (int __fd, __const struct timeval __tvp[2]) ; # 181 "/usr/include/sys/time.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/en... ... # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 26 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/fcntl.h" 1 3 4 # 25 "/usr/include/bits/fcntl.h" 3 4 # 1 "/usr/include/sys... ... 4 # 140 "/usr/include/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 34 "/usr/include/fcntl.h" 2 3 4 # 63 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 72 "/usr/include/fcntl.h" 3 4 extern int open (__const char *__file, int __oflag, ...); # 90 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode); # 119 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 174 "/usr/include/fcntl.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:16: io.h: No such file or directory ret = 256 error message = {conftest.c:3:16: io.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 11 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/syslimits.h" 1 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 122 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 26 "/usr/include/limits.h" 3 4 # 1 "/usr/include/featur... ... r/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 36 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 37 "/usr/include/bits/local_lim.h" 2 3 4 # 131 "/usr/include/bits/posix1_lim.h" 2 3 4 # 145 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 149 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 2 3 4 # 8 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/syslimits.h" 2 3 4 # 12 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 46 "/usr/include/malloc.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 151 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 213 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 325 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef int wchar_t; # 47 "/usr/incl... ... e_t malloc_usable_size (void * __ptr) ; extern void malloc_stats (void) ; extern void * malloc_get_state (void) ; extern int malloc_set_state (void * __ptr) ; extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, __const void *); extern void * (*__malloc_hook) (size_t __size, __const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, __const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) ; # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/word... ... sswd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 27 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/... ... nst void *__s2, size_t __n) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stropts.h" 1 3 4 # 22 "/usr/include/stropts.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/stropts.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/inclu... ... lptr, struct strbuf *__restrict __dataptr, int *__restrict __bandp, int *__restrict __flagsp); extern int ioctl (int __fd, unsigned long int __request, ...) ; extern int putmsg (int __fildes, __const struct strbuf *__ctlptr, __const struct strbuf *__dataptr, int __flags); extern int putpmsg (int __fildes, __const struct strbuf *__ctlptr, __const struct strbuf *__dataptr, int __band, int __flags); extern int fattach (int __fildes, __const char *__path) ; extern int fdetach (__const char *__path) ; # 4 "conftest.c" 2 Defined "HAVE_STROPTS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/unistd.h" 2 3 4 # 172 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/posix_opt.h" 1 3 4 # 173 "/usr/inclu... ... __const char *__file, __off_t __length) ; # 894 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) ; # 910 "/usr/include/unistd.h" 3 4 extern int getdtablesize (void) ; # 919 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; # 940 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) ; # 963 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 994 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes) ; # 1025 "/usr/include/unistd.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: machine/endian.h: No such file or directory ret = 256 error message = {conftest.c:3:28: machine/endian.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 22 "/usr/include/sys/param.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 11 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/syslimits.h" 1 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 122 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/include/... ... r) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 31 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 32 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/time.h" 3 4 # 1 "/usr/... ... ruct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 22 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/bits/resource.h" 1 3 4 # 24 "/usr/include/bits/resource.h... ... urce_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; # 71 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; # 89 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 26 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bit... ... sion__ typedef unsigned long int __fsfilcnt_t; __extension__ typedef unsigned long long int __fsfilcnt64_t; __extension__ typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef long int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 26 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 ... ... sr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 4 # 49 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 26 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... nt __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 287 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 309 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 379 "/usr/include/string.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... len (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 23 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/in... ... l, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; # 209 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; # 231 "/usr/include/sys/socket.h" 3 4 extern int isfdtype (int __fd, int __fdtype) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 26 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 31 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bi... ... fo.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 # 140 "/usr/include/sys/wait.h" 2 3 4 # 151 "/usr/include/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 22 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/incl... ... bute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 274 "/usr/include/netinet/in.h" 2 3 4 # 336 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; # 364 "/usr/include/netinet/in.h" 3 4 struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; # 387 "/usr/include/netinet/in.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/std... ... __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 662 "/usr/include/netdb.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc-lib/x... ... e.h" 3 4 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 413 "/usr/include/time.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: Ws2tcpip.h: No such file or directory ret = 256 error message = {conftest.c:3:22: Ws2tcpip.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr... ... - sizeof (_pthread_descr) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: WindowsX.h: No such file or directory ret = 256 error message = {conftest.c:3:22: WindowsX.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/en... ... # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 26 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/fcntl.h" 1 3 4 # 25 "/usr/include/bits/fcntl.h" 3 4 # 1 "/usr/include/sys... ... 4 # 140 "/usr/include/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 34 "/usr/include/fcntl.h" 2 3 4 # 63 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 72 "/usr/include/fcntl.h" 3 4 extern int open (__const char *__file, int __oflag, ...); # 90 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode); # 119 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 174 "/usr/include/fcntl.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/float.h" 1 3 4 # 4 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:16: io.h: No such file or directory ret = 256 error message = {conftest.c:3:16: io.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 11 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/syslimits.h" 1 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 122 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 26 "/usr/include/limits.h" 3 4 # 1 "/usr/include/featur... ... r/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 36 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 37 "/usr/include/bits/local_lim.h" 2 3 4 # 131 "/usr/include/bits/posix1_lim.h" 2 3 4 # 145 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 149 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 2 3 4 # 8 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/syslimits.h" 2 3 4 # 12 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 46 "/usr/include/malloc.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 151 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 213 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 325 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef int wchar_t; # 47 "/usr/incl... ... e_t malloc_usable_size (void * __ptr) ; extern void malloc_stats (void) ; extern void * malloc_get_state (void) ; extern int malloc_set_state (void * __ptr) ; extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void * __ptr, __const void *); extern void * (*__malloc_hook) (size_t __size, __const void *); extern void * (*__realloc_hook) (void * __ptr, size_t __size, __const void *); extern void * (*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) ; # 4 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/word... ... sswd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 27 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/... ... nst void *__s2, size_t __n) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) ; extern void bzero (void *__s, size_t __n) ; extern int ffs (int __i) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 4 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stropts.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stropts.h" 1 3 4 # 22 "/usr/include/stropts.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/stropts.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/inclu... ... lptr, struct strbuf *__restrict __dataptr, int *__restrict __bandp, int *__restrict __flagsp); extern int ioctl (int __fd, unsigned long int __request, ...) ; extern int putmsg (int __fildes, __const struct strbuf *__ctlptr, __const struct strbuf *__dataptr, int __flags); extern int putpmsg (int __fildes, __const struct strbuf *__ctlptr, __const struct strbuf *__dataptr, int __band, int __flags); extern int fattach (int __fildes, __const char *__path) ; extern int fdetach (__const char *__path) ; # 4 "conftest.c" 2 Defined "HAVE_STROPTS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/unistd.h" 2 3 4 # 172 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/posix_opt.h" 1 3 4 # 173 "/usr/inclu... ... __const char *__file, __off_t __length) ; # 894 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) ; # 910 "/usr/include/unistd.h" 3 4 extern int getdtablesize (void) ; # 919 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) ; extern void *sbrk (intptr_t __delta) ; # 940 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) ; # 963 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 994 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes) ; # 1025 "/usr/include/unistd.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: machine/endian.h: No such file or directory ret = 256 error message = {conftest.c:3:28: machine/endian.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 22 "/usr/include/sys/param.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 11 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/syslimits.h" 1 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 1 3 4 # 122 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/limits.h" 3 4 # 1 "/usr/include/... ... r) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/sys/param.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 31 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 32 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/time.h" 3 4 # 1 "/usr/... ... ruct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 22 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/bits/resource.h" 1 3 4 # 24 "/usr/include/bits/resource.h... ... urce_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) ; # 71 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) ; # 89 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) ; extern int getpriority (__priority_which_t __which, id_t __who) ; extern int setpriority (__priority_which_t __which, id_t __who, int __prio) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 26 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bit... ... sion__ typedef unsigned long int __fsfilcnt_t; __extension__ typedef unsigned long long int __fsfilcnt64_t; __extension__ typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef long int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 26 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 ... ... sr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 4 # 49 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 26 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... nt __c) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__pure__)); extern int ffs (int __i) __attribute__ ((__const__)); # 287 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__pure__)); # 309 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) ; # 379 "/usr/include/string.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc... ... len (__const char *__s, size_t __n) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) ; extern int wctomb (char *__s, wchar_t __wchar) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) ; extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) ; extern int rpmatch (__const char *__response) ; # 916 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) ; # 4 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 23 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/in... ... l, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) ; extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) ; extern int listen (int __fd, int __n) ; # 209 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) ; # 231 "/usr/include/sys/socket.h" 3 4 extern int isfdtype (int __fd, int __fdtype) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 26 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 31 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bi... ... fo.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 # 140 "/usr/include/sys/wait.h" 2 3 4 # 151 "/usr/include/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) ; struct rusage; extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 22 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/incl... ... bute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 27 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 2 3 4 # 274 "/usr/include/netinet/in.h" 2 3 4 # 336 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) ; extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) ; # 364 "/usr/include/netinet/in.h" 3 4 struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; # 387 "/usr/include/netinet/in.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/std... ... __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) ; extern __const char *gai_strerror (int __ecode) ; extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 662 "/usr/include/netdb.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc-lib/x... ... e.h" 3 4 extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) ; extern int timer_delete (timer_t __timerid) ; extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) ; extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) ; extern int timer_getoverrun (timer_t __timerid) ; # 413 "/usr/include/time.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: Ws2tcpip.h: No such file or directory ret = 256 error message = {conftest.c:3:22: Ws2tcpip.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr... ... - sizeof (_pthread_descr) - sizeof (__pthread_cond_align_t)]; __pthread_cond_align_t __align; } pthread_cond_t; typedef struct { int __dummy; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef struct { int __m_reserved; int __m_count; _pthread_descr __m_owner; int __m_kind; struct _pthread_fastlock __m_lock; } pthread_mutex_t; typedef struct { int __mutexkind; } pthread_mutexattr_t; typedef int pthread_once_t; # 150 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; # 267 "/usr/include/sys/types.h" 2 3 4 # 4 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) TESTING: check from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:37) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: WindowsX.h: No such file or directory ret = 256 error message = {conftest.c:3:22: WindowsX.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:157) TESTING: checkRecursiveMacros from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:157) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:100) TESTING: checkSysinfo from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:100) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 214 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned l... ... 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 214 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; extern void BUILD_BUG(void); # 4 "conftest.c" 2 Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 214 "/usr/include/linux/kernel.h" 3 ... ... ng sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; extern void BUILD_BUG(void); # 26 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) ; extern int get_nprocs_conf (void) ; extern int get_nprocs (void) ; extern long int get_phys_pages (void) ; extern long int get_avphys_pages (void) ; # 4 "conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:13:4: #error "Cannot check sysinfo without special headers" conftest.c: In function `main': conftest.c:17: warning: implicit declaration of function `sysinfo' } Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } ================================================================================ TEST checkVPrintf from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:123) TESTING: checkVPrintf from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:123) Checking for function vprintf sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `vprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: ================================================================================ TEST checkFreeReturnType from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:140) TESTING: checkFreeReturnType from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:140) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:6: error: void value not ignored as it ought to be } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_access' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_access' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_getcwd' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_getcwd' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_sleep' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_sleep' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_snprintf' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_snprintf' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_lseek' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_lseek' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_access' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_access' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_getcwd' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_getcwd' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: the `getwd' function is dangerous and should not be used. output: error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: the `getwd' function is dangerous and should not be used. } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_sleep' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_sleep' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `snprintf' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_snprintf' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_snprintf' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_lseek' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_lseek' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c:10: warning: conflicting types for built-in function `bzero' } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/sandbox/petsc/petsc-dev/python/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/sandbox/petsc/petsc-dev/python/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/sandbox/petsc/petsc-dev/python/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: sigfpe.h: No such file or directory ret = 256 error message = {conftest.c:3:20: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:19: fpxcp.h: No such file or directory ret = 256 error message = {conftest.c:3:19: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: floatingpoint.h: No such file or directory ret = 256 error message = {conftest.c:3:27: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/sandbox/petsc/petsc-dev/python/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/sandbox/petsc/petsc-dev/python/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/sandbox/petsc/petsc-dev/python/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/sandbox/petsc/petsc-dev/python/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_gfortran_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `_gfortran_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `ipxfargc_' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `ipxfargc_' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `f90_unix_MP_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `f90_unix_MP_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:20: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function GETARG@16 sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:10: error: syntax error at '@' token conftest.c:10: error: parse error before numeric constant conftest.c:17:27: missing ')' after "defined" conftest.c:17:28: missing binary operator before token "16" conftest.c: In function `main': conftest.c:20: error: syntax error at '@' token conftest.c:20: error: `GETARG' undeclared (first use in this function) conftest.c:20: error: (Each undeclared identifier is reported only once conftest.c:20: error: for each function it appears in.) conftest.c:20: error: parse error before numeric constant } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Popping language C ================================================================================ TEST checkSizeTypes from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:41) TESTING: checkSizeTypes from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:41) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:46) TESTING: checkFileTypes from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:46) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkPID from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:52) TESTING: checkPID from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:52) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:12: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:56) TESTING: checkUID from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:56) Checks for uid_t and gid_t, and defines them if necessary sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:63) TESTING: checkSignal from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:63) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkFortranKind from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:109) TESTING: checkFortranKind from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:109) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.F: In program `main': conftest.F:3: integer(kind=selected_int_kind(10)) i ^ Invalid declaration of or reference to symbol `selected_int_kind' at (^) [initially seen at (^)] conftest.F:4: real(kind=selected_real_kind(10)) d ^ Invalid declaration of or reference to symbol `selected_real_kind' at (^) [initially seen at (^)] conftest.F:4: warning: unused variable `d' conftest.F:3: warning: unused variable `i' } Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:121) TESTING: checkFortranDReal from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:121) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language FC ================================================================================ TEST checkConst from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:129) TESTING: checkConst from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:129) Checks for working const, and if not found defines it to empty string sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:34: warning: declaration of `x' shadows a previous local conftest.c:7: warning: shadowed declaration is here conftest.c:40: warning: declaration of `p' shadows a previous local conftest.c:10: warning: shadowed declaration is here } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:185) TESTING: checkEndian from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:185) If the machine is bgi endian, defines WORDS_BIGENDIAN sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c: In function `main': conftest.c:9: error: `not' undeclared (first use in this function) conftest.c:9: error: (Each undeclared identifier is reported only once conftest.c:9: error: for each function it appears in.) conftest.c:9: error: parse error before "big" } Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) TESTING: checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) TESTING: checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) TESTING: checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) TESTING: checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) TESTING: checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) TESTING: checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) TESTING: checkSizeof from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:238) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:279) TESTING: checkBitsPerByte from config.types(/sandbox/petsc/petsc-dev/python/BuildSystem/config/types.py:279) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) TESTING: check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lsocket -lnsl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lsocket -lnsl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lsocket -lnsl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) TESTING: check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lfpe -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lfpe -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lfpe -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) TESTING: check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lsocket -lnsl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lsocket -lnsl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lsocket -lnsl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) TESTING: check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lfpe -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lfpe -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lfpe -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:167) TESTING: checkMath from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:167) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'sqrt'] in library [''] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0x16): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `sin' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0x16): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `sin' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); int main() { double x; sin(x); ; return 0; } Popping language C Checking for functions ['sin', 'floor', 'log10', 'sqrt'] in library ['m'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_LIBM" to "1" Popping language C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Using libm for the math library ================================================================================ TEST checkMathErf from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:183) TESTING: checkMathErf from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:183) Check for erf() in libm, the math library Checking for functions ['erf'] in library ['libm.a'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:192) TESTING: checkDynamic from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:192) Check for the header and libraries necessary for dynamic library manipulation Checking for functions ['dlopen'] in library ['dl'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -ldl -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Checking for header: dlfcn.h sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 295 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 296 "/usr/include/features.h" 2 3 4 # 318 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 319 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc-li... ... _64-suse-linux/3.3.1/include/stddef.h" 1 3 4 # 213 "/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 45 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) ; extern int dlclose (void *__handle) ; extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) ; # 71 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) ; # 157 "/usr/include/dlfcn.h" 3 4 # 4 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureTimers from PETSc.utilities.timer(/sandbox/petsc/petsc-dev/python/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(/sandbox/petsc/petsc-dev/python/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `MPI_CRAY_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `MPI_CRAY_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/sandbox/petsc/petsc-dev/python/PETSc/utilities/libraryOptions.py:44) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/sandbox/petsc/petsc-dev/python/PETSc/utilities/libraryOptions.py:44) Sets PETSC_USE_DEBUG, PETSC_USE_VERBOSE, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_VERBOSE" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure Defined "USE_32BIT_INT" to "1" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default PETSc clone, checking for c2html Defined make macro "C2HTML" to "/sandbox/petsc/petsc-dev/externalpackages/c2html-0.9.4/linux-gnu-c-real-debug/bin/c2html" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.babel(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Lgrind Found Lgrind executable; skipping compile sh: cd /sandbox/petsc/petsc-dev/externalpackages/lgrind-dev/source; make clean Executing: cd /sandbox/petsc/petsc-dev/externalpackages/lgrind-dev/source; make clean sh: rm -f lgrind.o regexp.o retest.o lgrindef.o v2lg.o lgrind retest v2lg Defined make macro "LGRIND" to "/sandbox/petsc/petsc-dev/externalpackages/lgrind-dev/linux-gnu-c-real-debug/lgrind" Defined make macro "LGRIND_DIR" to "/sandbox/petsc/petsc-dev/externalpackages/lgrind-dev" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing Defined make macro "BFORT " to "/sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/bfort" Defined make macro "DOCTEXT " to "/sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/doctext" Defined make macro "MAPNAMES " to "/sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/mapnames" Defined make macro "BIB2HTML " to "/sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/bib2html" Checking for program /opt/kde3/bin/pdflatex...not found Checking for program /opt/gnome/bin/pdflatex...not found Checking for program /usr/games/pdflatex...not found Checking for program /homes/petsc/bin/pdflatex...not found Checking for program /usr/bin/X11/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program ./pdflatex...not found Checking for program /home/petsc/soft/linux-suse-amd64/bitkeeper/pdflatex...not found Checking for program /home/petsc/soft/linux-suse-amd64/rsync/bin/pdflatex...not found Checking for program /sandbox/petsc/soft/sunstudio10u1/bin/pdflatex...not found Checking for program /homes/petsc/pdflatex...not found Checking for program /sandbox/petsc/petsc-dev/bin/win32fe/pdflatex...not found Running /sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/bfort to generate fortran stubs ================================================================================ TEST configureLibrary from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:365) TESTING: configureLibrary from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:365) ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (HPUX) ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libveclib.a'] ['-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lveclib -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lveclib -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lveclib -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libveclib.a'] ['-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lveclib -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lveclib -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lveclib collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lveclib -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root (F2C) ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libf2cblas.a', 'libm.a'] ['-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lf2cblas -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lf2cblas -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lf2cblas -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C Checking cblaslapack name-mangling Checking for functions ['ddot_'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libf2cblas.a', 'libm.a'] ['-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lf2cblas -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lf2cblas -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lf2cblas collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lf2cblas -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); int main() { ddot_() ; return 0; } Popping language C ================================================================================ Checking for a functional BLAS and LAPACK in User specified installation root ================================================================================ TEST checkLib from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:101) TESTING: checkLib from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:101) Checking for BLAS and LAPACK symbols Checking for functions ['ddot'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a'] ['-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions ['dgetrs'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checkESSL from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:415) TESTING: checkESSL from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:415) Check for the IBM ESSL library Checking for functions ['iessl'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `iessl' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `iessl' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); int main() { iessl() ; return 0; } Popping language C ================================================================================ TEST checkMissing from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:421) TESTING: checkMissing from PETSc.packages.BlasLapack(/sandbox/petsc/petsc-dev/python/PETSc/packages/BlasLapack.py:421) Check for missing LAPACK routines Checking for functions ['dgesvd'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Checking for functions ['dgeev'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Checking for functions ['dgetrf'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Checking for functions ['dpotrf'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Checking for functions ['dgetrs'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Checking for functions ['dpotrs'] in library ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libflapack.a'] ['/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test/libfblas.a', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-L/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-L/usr/lib/../lib64', '-ldl', '-lmpich', '-lgcc_eh', '-lg2c', '-lm', '-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64', '-Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../..', '-Wl,-rpath,/lib/../lib64', '-Wl,-rpath,/usr/lib/../lib64', '-lm', '-lgcc_s'] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.UMFPACK(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from PETSc.packages.X11(/sandbox/petsc/petsc-dev/python/PETSc/packages/X11.py:91) TESTING: configureLibrary from PETSc.packages.X11(/sandbox/petsc/petsc-dev/python/PETSc/packages/X11.py:91) Checks for X windows, sets PETSC_HAVE_X11 if found, and defines X_CFLAGS, X_PRE_LIBS, X_LIBS, and X_EXTRA_LIBS sh: xmkmf Executing: xmkmf sh: Error using Xmake: Could not execute 'xmkmf': /bin/sh: line 1: xmkmf: command not found sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: X11/Intrinsic.h: No such file or directory ret = 256 error message = {conftest.c:3:27: X11/Intrinsic.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:5: warning: implicit declaration of function `XtMalloc' } Source: #include "confdefs.h" #include "conffix.h" int main() { XtMalloc(); ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lXt Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lXt sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lXt collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: cannot find -lXt collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl -lXt Source: #include "confdefs.h" #include "conffix.h" int main() { XtMalloc(); ; return 0; } Popping language C Could not find X11 includes Could not find X11 libraries Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:460) TESTING: configureLibrary from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:460) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] ================================================================================ TEST check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) TESTING: check from config.libraries(/sandbox/petsc/petsc-dev/python/BuildSystem/config/libraries.py:96) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['MPI_Init', 'MPI_Comm_create', 'MPI_Allreduce'] in library [] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language C Checking for headers User specified root directory MPI: ['/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include', '-I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include'] ================================================================================ TEST checkInclude from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:46) TESTING: checkInclude from config.headers(/sandbox/petsc/petsc-dev/python/BuildSystem/config/headers.py:46) Checks if a particular include file can be found along particular include paths sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include/mpi.h" 1 # 24 "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include/mpi.h" typedef int MPI_Datatype; # 95 "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; # 115 "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include/mpi.h" typedef str... ... MPI_Datatype *); int PMPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Unpack_external(char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype); int PMPI_Win_create_errhandler(MPI_Win_errhandler_fn *, MPI_Errhandler *); int PMPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int PMPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); # 4 "conftest.c" 2 Found header files ['mpi.h'] in ['/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include', '-I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include'] ================================================================================ TEST configureConversion from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:148) TESTING: configureConversion from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:148) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MPI_COMM_F2C" to "1" sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MPI_COMM_C2F" to "1" sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureTypes from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:168) TESTING: configureTypes from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:168) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMissingPrototypes from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:195) TESTING: configureMissingPrototypes from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:195) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:431) TESTING: SGIMPICheck from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:431) Returns true if SGI MPI is used Checking for functions ['MPI_SGI_barrier'] in library [] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `MPI_SGI_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {conftest.o(.text+0xa): In function `main': /sandbox/petsc/petsc-dev/conftest.c:7: undefined reference to `MPI_SGI_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); int main() { MPI_SGI_barrier() ; return 0; } Popping language C SGI MPI test failure ================================================================================ TEST FortranMPICheck from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:441) TESTING: FortranMPICheck from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:441) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Checking for functions [''] in library [] [] Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language FC Checking for fortran mpi_init() Checking for functions [''] in library [] [] Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.F Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -c -o conftest.o -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.F sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -o conftest -fPIC -Wall -g -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Popping language FC Popping language FC ================================================================================ TEST checkSharedLibrary from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:109) TESTING: checkSharedLibrary from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:109) Check that the libraries for MPI are shared libraries ================================================================================ TEST configureMPIRUN from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:119) TESTING: configureMPIRUN from PETSc.packages.MPI(/sandbox/petsc/petsc-dev/python/PETSc/packages/MPI.py:119) Checking for mpirun Pushing language C Popping language C Checking for program /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpiexec...found Defined make macro "MPIRUN" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpiexec" sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o libconftest.so -shared -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: Possible ERROR while running linker: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib/libmpich.a(init.o): relocation R_X86_64_32 can not be used when making a shared object; recompile with -fPIC /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib/libmpich.a: could not read symbols: Bad value collect2: ld returned 1 exit status output: ret = 256 error message = {/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/bin/ld: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib/libmpich.a(init.o): relocation R_X86_64_32 can not be used when making a shared object; recompile with -fPIC /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib/libmpich.a: could not read symbols: Bad value collect2: ld returned 1 exit status } Pushing language C Popping language C in /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } e Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PLAPACK(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blacs(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SCALAPACK(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.blopex(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.blopex(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ParMetis(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Prometheus(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MPE(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.MPE(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spooles(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/sandbox/petsc/petsc-dev/python/PETSc/package.py:290) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/sandbox/petsc/petsc-dev/python/PETSc/utilities/Regression.py:31) TESTING: configureRegression from PETSc.utilities.Regression(/sandbox/petsc/petsc-dev/python/PETSc/utilities/Regression.py:31) Output a file listing the jobs that should be run by the PETSc buildtest ================================================================================ TEST configurePythonLanguage from PETSc.utilities.python(/sandbox/petsc/petsc-dev/python/PETSc/utilities/python.py:93) TESTING: configurePythonLanguage from PETSc.utilities.python(/sandbox/petsc/petsc-dev/python/PETSc/utilities/python.py:93) Download the Python bindings into src/python ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:35) Checks for limits sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `foo' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: ================================================================================ TEST configureMissingPrototypes from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:88) TESTING: configureMissingPrototypes from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:88) sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:14: warning: unused variable `err' } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/sandbox/petsc/petsc-dev/python/PETSc/utilities/missing.py:110) ================================================================================ TEST configureInline from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:204) TESTING: configureInline from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:204) Get a generic inline keyword, depending on the language Defined "STATIC_INLINE" to "static inline" ================================================================================ TEST configureSolaris from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:212) TESTING: configureSolaris from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:212) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:226) TESTING: configureLinux from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:226) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:232) TESTING: configureWin32 from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:232) Win32 non-cygwin specific stuff Checking for functions ['GetComputerName'] in library ['Kernel32.lib'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `GetComputerName' conftest.c:7: error: `NULL' undeclared (first use in this function) conftest.c:7: error: (Each undeclared identifier is reported only once conftest.c:7: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetComputerName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetComputerName'] in library ['kernel32'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `GetComputerName' conftest.c:7: error: `NULL' undeclared (first use in this function) conftest.c:7: error: (Each undeclared identifier is reported only once conftest.c:7: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetComputerName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetUserName'] in library ['Advapi32.lib'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `GetUserName' conftest.c:7: error: `NULL' undeclared (first use in this function) conftest.c:7: error: (Each undeclared identifier is reported only once conftest.c:7: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetUserName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetUserName'] in library ['advapi32'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `GetUserName' conftest.c:7: error: `NULL' undeclared (first use in this function) conftest.c:7: error: (Each undeclared identifier is reported only once conftest.c:7: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetUserName(NULL,NULL);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetDC'] in library ['User32.lib'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `GetDC' } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetDC(0);; return 0; } Compile failed inside link Popping language C Checking for functions ['GetDC'] in library ['user32'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `GetDC' } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { GetDC(0);; return 0; } Compile failed inside link Popping language C Checking for functions ['CreateCompatibleDC'] in library ['Gdi32.lib'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `CreateCompatibleDC' } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { CreateCompatibleDC(0);; return 0; } Compile failed inside link Popping language C Checking for functions ['CreateCompatibleDC'] in library ['gdi32'] [] Pushing language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:4:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:7: warning: implicit declaration of function `CreateCompatibleDC' } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { CreateCompatibleDC(0);; return 0; } Compile failed inside link Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:6: warning: unused variable `u' } Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: error message = {conftest.c: In function `main': conftest.c:8: warning: unused variable `a' } Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Pushing language C Popping language C sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -o conftest -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.o -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl sh: sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:3:21: Windows.h: No such file or directory conftest.c: In function `main': conftest.c:6: error: `LARGE_INTEGER' undeclared (first use in this function) conftest.c:6: error: (Each undeclared identifier is reported only once conftest.c:6: error: for each function it appears in.) conftest.c:6: error: parse error before "a" conftest.c:7: error: `DWORD' undeclared (first use in this function) } Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -c -o conftest.o -fPIC -Wall -Wshadow -Wwrite-strings -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {conftest.c:3:21: Windows.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" ================================================================================ TEST configureDefaults from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:289) TESTING: configureDefaults from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:289) ================================================================================ TEST configureScript from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:300) TESTING: configureScript from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:300) Output a script in the bmake directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:328) TESTING: configureInstall from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:328) Setup the directories for installation ================================================================================ TEST configureGCOV from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:336) TESTING: configureGCOV from PETSc.Configure(/sandbox/petsc/petsc-dev/python/PETSc/Configure.py:336) Pushing language C Defined make macro "CC_FLAGS" to " -fPIC -Wall -Wshadow -Wwrite-strings -g3 " Popping language C Defined make macro "CPP_FLAGS" to "" Pushing language C Defined make macro "PCC" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc" Defined make macro "PCC_FLAGS" to " -fPIC -Wall -Wshadow -Wwrite-strings -g3 " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -Wall -Wshadow -Wwrite-strings -g3 " Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Defined make macro "PCC_LINKER_LIBS" to "-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl " Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -Wall -g " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC sh: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -V Executing: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -V sh: Defined make macro "FC_LINKER" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -Wall -g " Popping language FC Defined make macro "FC_LINKER_SUFFIX" to "" Defined make macro "FC_LINKER_LIBS" to "-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl " Pushing language C Defined make macro "SL_LINKER" to "/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to " -fPIC -Wall -Wshadow -Wwrite-strings -g3 " Popping language C Defined make macro "SL_LINKER_SUFFIX" to "so" sh: uname -s Executing: uname -s sh: Linux Defined make macro "SL_LINKER_LIBS" to "-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl " Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" sh: CC -V Executing: CC -V sh: Defined "USE_SOCKET_VIEWER" to "1" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined make macro "PACKAGES_LIBS" to "${MPI_LIB} ${BLASLAPACK_LIB} -lm" Defined make macro "INSTALL_DIR" to "/sandbox/petsc/petsc-dev" Defined make macro "top_builddir" to "/sandbox/petsc/petsc-dev" Defined make macro "CONFIGURE_OPTIONS" to "--with-mpi-dir=/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test --with-blas-lapack-dir=/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test --with-shared=1" ================================================================================ Pushing language C Popping language C Pushing language FC Popping language FC Compilers: C Compiler: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -fPIC -Wall -Wshadow -Wwrite-strings -g3 Fortran Compiler: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 -fPIC -Wall -g Linkers: Shared linker: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -shared -fPIC -Wall -Wshadow -Wwrite-strings -g3 Dynamic linker: /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -shared -fPIC -Wall -Wshadow -Wwrite-strings -g3 PETSc: ** ** Before running "make" your PETSC_ARCH must be specified with: ** ** setenv PETSC_ARCH linux-gnu-c-real-debug (csh/tcsh) ** ** PETSC_ARCH=linux-gnu-c-real-debug; export PETSC_ARCH (sh/bash) ** PETSC_DIR: /sandbox/petsc/petsc-dev ** ** Now build and test the libraries with "make all test" ** Scalar type:real Clanguage: C PETSc shared libraries: enabled PETSc dynamic libraries: disabled MPI: Includes: ['/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include', '-I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include'] BLAS/LAPACK: -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas **** bmake/linux-gnu-c-real-debug/petscconf **** DBX = /sandbox/petsc/soft/sunstudio10u1/bin/dbx GDB = /usr/bin/gdb ETAGS = /sandbox/petsc/soft/sunstudio10u1/bin/etags AR_FLAGS = cr PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -fPIC -Wall -g SL_LINKER = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc CC_FLAGS = -fPIC -Wall -Wshadow -Wwrite-strings -g3 PETSC_PRECISION = double INSTALL_DIR = /sandbox/petsc/petsc-dev PACKAGES_LIBS = ${MPI_LIB} ${BLASLAPACK_LIB} -lm FC_FLAGS = -fPIC -Wall -g BLASLAPACK_LIB = -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lflapack -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -L/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test -lfblas FC_LINKER_SUFFIX = PCC = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc SL_LINKER_LIBS = -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl MPI_LIB = SL_LINKER_FLAGS = -fPIC -Wall -Wshadow -Wwrite-strings -g3 CC_SUFFIX = o CONFIGURE_OPTIONS = --with-mpi-dir=/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test --with-blas-lapack-dir=/sandbox/petsc/petsc-dev/externalpackages/fblaslapack/linux-test --with-shared=1 PETSC_SCALAR = real CPP_FLAGS = FPP_FLAGS = FC_LINKER = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 PCC_LINKER = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc PCC_LINKER_FLAGS = -fPIC -Wall -Wshadow -Wwrite-strings -g3 PCC_FLAGS = -fPIC -Wall -Wshadow -Wwrite-strings -g3 PCC_LINKER_LIBS = -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl FC_LINKER_LIBS = -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -lg2c -lm -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -lm -lgcc_s -Wl,-rpath,/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -L/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../x86_64-suse-linux/lib -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../../../lib64 -Wl,-rpath,/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.1/../../.. -Wl,-rpath,/lib/../lib64 -L/lib/../lib64 -Wl,-rpath,/usr/lib/../lib64 -L/usr/lib/../lib64 -ldl -lmpich -lgcc_eh -ldl BLASLAPACK_INCLUDE = CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = so MPI_INCLUDE = -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include -I/sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/include top_builddir = /sandbox/petsc/petsc-dev FC_SUFFIX = o CC = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc CC_LINKER_SLFLAG = -Wl,-rpath, FC = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpif77 FC_LINKER_SLFLAG = -Wl,-rpath, CPP = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpicc AR = /usr/bin/ar DIR = /sandbox/petsc/petsc-dev BUILDSHAREDLIB = yes SHELL = /bin/sh GREP = /usr/bin/grep MV = /bin/mv MKDIR = /bin/mkdir -p SED = /usr/bin/sed DIFF = /usr/bin/diff -w GZIP = /usr/bin/gzip RM = /bin/rm -f CP = /bin/cp OMAKE = /usr/bin/make --no-print-directory MAKE = /usr/bin/make CVS = cvs BK = bk MPIRUN = /sandbox/petsc/petsc-dev/externalpackages/mpich2-1.0.3/linux-test/bin/mpiexec DATAFILESPATH = /home/petsc/datafiles BIB2HTML = /sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/bib2html MAPNAMES = /sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/mapnames BFORT = /sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/bfort DOCTEXT = /sandbox/petsc/petsc-dev/externalpackages/sowing-1.1.10/linux-gnu-c-real-debug/bin/doctext LGRIND = /sandbox/petsc/petsc-dev/externalpackages/lgrind-dev/linux-gnu-c-real-debug/lgrind LGRIND_DIR = /sandbox/petsc/petsc-dev/externalpackages/lgrind-dev C2HTML = /sandbox/petsc/petsc-dev/externalpackages/c2html-0.9.4/linux-gnu-c-real-debug/bin/c2html **** bmake/linux-gnu-c-real-debug/petscrules **** shared_arch: shared_linux .F.a: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.a: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $< .f.o .f90.o: -${FC} -c ${FFLAGS} ${FC_FLAGS} ${FOPTFLAGS} $< libc: ${LIBNAME}(${OBJSC} ${SOBJSC}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} **** bmake/linux-gnu-c-real-debug/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef PETSC_STATIC_INLINE #define PETSC_STATIC_INLINE static inline #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_STROPTS_H #define PETSC_HAVE_STROPTS_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_PRINTF_FORMAT_CHECK #define PETSC_PRINTF_FORMAT_CHECK(A,B) __attribute__((format (printf, A, B))) #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_RESTRICT #define PETSC_RESTRICT __restrict__ #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_LIBFLAPACK #define PETSC_HAVE_LIBFLAPACK 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBFBLAS #define PETSC_HAVE_LIBFBLAS 1 #endif #ifndef PETSC_ARCH_NAME #define PETSC_ARCH_NAME "linux-gnu-c-real-debug" #endif #ifndef PETSC_ARCH #define PETSC_ARCH linux #endif #ifndef PETSC_DIR #define PETSC_DIR /sandbox/petsc/petsc-dev #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_EXTERN_CXX #define PETSC_USE_EXTERN_CXX #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETPWUID #define PETSC_HAVE_GETPWUID 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_32BIT_INT #define PETSC_USE_32BIT_INT 1 #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_USE_VERBOSE #define PETSC_USE_VERBOSE 1 #endif #endif **** bmake/linux-gnu-c-real-debug/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Python Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- lgrind: Install : Installed lgrind into /sandbox/petsc/petsc-dev/externalpackages/lgrind-dev/linux-gnu-c-real-debug PETSc: File creation : Generated Fortran stubs and made makefile.src File creation : Generated list of jobs for testing in bmake/linux-gnu-c-real-debug/jobs File creation : Generated list of jobs for testing in bmake/linux-gnu-c-real-debug/ejobs File creation : Generated list of jobs for testing in bmake/linux-gnu-c-real-debug/rjobs Build : Set default architecture to linux-gnu-c-real-debug in bmake/petscconf File creation : Created bmake/linux-gnu-c-real-debug/configure.py for automatic reconfiguration Framework: File creation : Created makefile configure header bmake/linux-gnu-c-real-debug/petscconf File creation : Created makefile configure header bmake/linux-gnu-c-real-debug/petscconf File creation : Created configure header bmake/linux-gnu-c-real-debug/petscconf.h File creation : Created C specific configure header bmake/linux-gnu-c-real-debug/petscfix.h