[petsc-dev] PetscSSLDestroyContext
Mark Adams
mfadams at lbl.gov
Tue Feb 17 17:28:48 CST 2015
Humm, we use something like:
include ${PETSC_DIR}/lib/petsc-conf/variables
$(CMP) -o $(CMD) $(OPT) $(OBJ) $(LIB) ${PETSC_POST_LINK_OPTS}
${PETSC_FORTRAN_LIB} ${PETSC_KSP_LIB}
Are we blowing it? I have not been able to integrate our makefiles to use
petsc rules so I just make do with variables.
Thanks,
Mark
On Tue, Feb 17, 2015 at 5:18 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
>
> Well you are not linking to all the PETSc needed libraries. I don't
> know where you got your makefile but it is not portable. It should link
> against everything that is returned from make getlinklibs which on my
> machine gives
>
> $ make getlinklibs
> -Wl,-rpath,/Users/barrysmith/Src/PETSc/arch-double/lib
> -Wl,-rpath,/Users/barrysmith/Src/PETSc/arch-double/lib
> -L/Users/barrysmith/Src/PETSc/arch-double/lib -lpetsc -llapack -lblas
> -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lpthread -lssl -lcrypto -ldl
>
>
>
> > On Feb 17, 2015, at 4:10 PM, Mark Adams <mfadams at lbl.gov> wrote:
> >
> > I am able to make ex61f ....
> >
> >
> > ftn -openmp -DADIOS -DADIOS_NEW_INIT -DADIOS_READ_V2 -DADIOS_WRITE_NEW
> -DADIOS_READ_NEW -DADIOS_TIME -DUSE_BICUB_MOD -DUSE_ONE_D_I_CUB_MOD
> -DTRIGRID -DNEWFIELD -DMAXWELL_V_DIST2 -DUSE_LOADING_FACTOR -DV_PERP
> -DSOLVERLU -O3 -no-ipo -traceback -o xgca -fast -no-ipo -DPSPLINE
> -I/usr/common/usg/pspline/nersc1.0/intel/mod -DCAM_TIMERS -I../camtimers
> -I/usr/common/usg/adios/1.6.0/intel/include
> -I/usr/common/usg/minixml/2.7/intel/include
> -I/global/homes/m/madams/petsc_private//include
> -I/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/include
> module.o bspline90_22.o taus88.o derf.o datanh.o pppack.o fmin.o
> bicub_mod.o search.o psmooth.o pol_decomp.o f0module.o charge.o main.o
> read.o gen_perm.o sort_particles.o push.o pushe.o load.o one_d_cub_mod.o
> collisionf.o collisionf2.o setup.o efield.o interpolation.o mpi.o
> diagnosis.o limiter.o bounce.o diagnosis2.o collision.o collision2.o
> elliptics.o diagnosis-f.o heat.o neutral2.o neutral3.o neutral.o
> linearsolver.o fem2d.o fem_ops.o poisson.o poisson_extra_common.o
> poisson_extra_xgca.o new_petsc_solver.o qevaluateandtrapped.o
> -L/usr/common/usg/pspline/nersc1.0/intel/lib -lpspline -lezcdf
> -L/usr/common/usg/adios/1.6.0/intel/lib -ladiosf
> -L/usr/common/usg/minixml/2.7/intel/lib -lm -lmxml
> -L/usr/common/usg/minixml/2.7/intel/lib -L../camtimers -ltimers
> -L/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib -lpetsc
> -lHYPRE -L/global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib
> -lparmetis -lmetis -lsuperlu_dist_3.3 -lparmetis -lmetis
> > /opt/cray/hdf5-parallel/1.8.13/INTEL/140/lib/libhdf5_parallel.a(H5PL.o):
> In function `H5PL_load':
> > H5PL.c:(.text+0x3b7): warning: Using 'dlopen' in statically linked
> applications requires at runtime the shared libraries from the glibc
> version used for linking
> >
> /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(send.o):
> In function `PetscOpenSocket':
> >
> /global/u2/m/madams/petsc_private/src/sys/classes/viewer/impls/socket/send.c:(.text+0xc8):
> warning: Using 'gethostbyname' in statically linked applications requires
> at runtime the shared libraries from the glibc version used for linking
> >
> /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscSSLDestroyContext':
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x12):
> undefined reference to `SSL_CTX_free'
> >
> /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscHTTPSRequest':
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x60):
> undefined reference to `SSL_write'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x6e):
> undefined reference to `SSL_get_error'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0xcb):
> undefined reference to `SSL_read'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0xdb):
> undefined reference to `SSL_get_error'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0xef):
> undefined reference to `SSL_shutdown'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x20d):
> undefined reference to `SSL_free'
> >
> /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscHTTPSConnect':
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1b8e):
> undefined reference to `SSL_new'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1b9b):
> undefined reference to `BIO_new_socket'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1ba9):
> undefined reference to `SSL_set_bio'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x1bb1):
> undefined reference to `SSL_connect'
> >
> /global/homes/m/madams/petsc_private//arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscSSLInitializeContext':
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24a1):
> undefined reference to `SSLv23_method'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24a9):
> undefined reference to `SSL_CTX_new'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24c0):
> undefined reference to `SSL_CTX_ctrl'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24d0):
> undefined reference to `SSL_library_init'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24d5):
> undefined reference to `SSL_load_error_strings'
> >
> /global/u2/m/madams/petsc_private/src/sys/webclient/client.c:(.text+0x24e3):
> undefined reference to `BIO_new_fp'
> > /usr/bin/ld: link errors found, deleting executable `xgca'
> > make: *** [xgca] Error 1
> > 14:00 2 edison02 dev_rhager ~/epsi/XGCa$
> >
> >
> > On Tue, Feb 17, 2015 at 2:47 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> >
> > > On Feb 17, 2015, at 1:39 PM, Mark Adams <mfadams at lbl.gov> wrote:
> > >
> > > Well, actually it is not fixed. It does work with --with-ssl=0. it
> configures and make fine but I get unresolved externals when I build.
> > > Mark
> >
> > Please send ALL the output from when it fails when you "build"
> including the complete link line of what it is trying to link.
> >
> > Barry
> >
> > >
> > > On Tue, Feb 17, 2015 at 2:15 PM, Mark Adams <mfadams at lbl.gov> wrote:
> > > I pulled and it is OK now.
> > >
> > > On Tue, Feb 17, 2015 at 12:32 PM, Barry Smith <bsmith at mcs.anl.gov>
> wrote:
> > >
> > > Please send configure.log and make.log When do you get this error?
> Making the PETSc library? Making the PETSc test? Making application?
> > >
> > > Yes you can configure with --with-ssl=0 but please send all the
> data first so we can see what goes wrong.
> > >
> > > Barry
> > >
> > >
> > > > On Feb 17, 2015, at 10:59 AM, Mark Adams <mfadams at lbl.gov> wrote:
> > > >
> > > > I started getting this error on Edison at NERSC. Should I configure
> with --with-ssl=0 ?
> > > >
> > > > Mark
> > > >
> > > >
> /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(send.o):
> In function `PetscOpenSocket':
> > > >
> /global/u2/m/madams/petsc_master/src/sys/classes/viewer/impls/socket/send.c:(.text+0xc8):
> warning: Using 'gethostbyname' in statically linked applications requires
> at runtime the shared libraries from the glibc version used for linking
> > > >
> /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscSSLDestroyContext':
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x12):
> undefined reference to `SSL_CTX_free'
> > > >
> /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscHTTPSRequest':
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x60):
> undefined reference to `SSL_write'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x6e):
> undefined reference to `SSL_get_error'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0xcb):
> undefined reference to `SSL_read'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0xdb):
> undefined reference to `SSL_get_error'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0xef):
> undefined reference to `SSL_shutdown'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x20d):
> undefined reference to `SSL_free'
> > > >
> /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscHTTPSConnect':
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1b8e):
> undefined reference to `SSL_new'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1b9b):
> undefined reference to `BIO_new_socket'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1ba9):
> undefined reference to `SSL_set_bio'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x1bb1):
> undefined reference to `SSL_connect'
> > > >
> /global/homes/m/madams/petsc_master/arch-xc30-opt64-intel/lib/libpetsc.a(client.o):
> In function `PetscSSLInitializeContext':
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24a1):
> undefined reference to `SSLv23_method'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24a9):
> undefined reference to `SSL_CTX_new'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24c0):
> undefined reference to `SSL_CTX_ctrl'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24d0):
> undefined reference to `SSL_library_init'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24d5):
> undefined reference to `SSL_load_error_strings'
> > > >
> /global/u2/m/madams/petsc_master/src/sys/webclient/client.c:(.text+0x24e3):
> undefined reference to `BIO_new_fp'
> > > > /usr/bin/ld: link errors found, deleting executable `xgca'
> > > > make: *** [xgca] Error 1
> > > >
> > >
> > >
> > >
> > > <configure.log>
> >
> >
>
>
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