[petsc-dev] Fortran libraries cannot be used with C++ compiler
Matthew Knepley
knepley at gmail.com
Tue Apr 1 09:29:48 CDT 2014
On Tue, Apr 1, 2014 at 9:20 AM, Pierpaolo Minelli <
pierpaolo.minelli at ba.imip.cnr.it> wrote:
> Hi,
>
> Thanks for your reply. I tried with --with-cxxlib-autodetect=0 but i
> obtain the same error.
> In attachment you can find configure.log for both cases:
> configure.log is my original log (without using --with-cxxlib-autodetect=0)
> configure.log.new is new log produced when i try to use option
> --with-cxxlib-autodetect=0
>
This appears to be a problem with your MPI:
ld: MPIR_Thread: TLS definition in /opt/intel/impi/
4.1.3.048/intel64/lib/libmpi_mt.so section .tbss mismatches non-TLS
definition in /opt/intel/impi/4.1.3.048/intel64/lib/libmpi.so section .bss
/opt/intel/impi/4.1.3.048/intel64/lib/libmpi.so: could not read symbols:
Bad value
Popping language Cxx
compilers: Cannot compile/link Cxx with mpiicpc.
Can you run anything with it?
Matt
> Thanks,
>
> Pierpaolo
>
>
>
>
> Il giorno 01/apr/2014, alle ore 15:02, Matthew Knepley <knepley at gmail.com>
> ha scritto:
>
> On Tue, Apr 1, 2014 at 5:15 AM, Pierpaolo Minelli <
> pierpaolo.minelli at ba.imip.cnr.it> wrote:
>
>> Hi,
>>
>> i have some problems when i try to configure latest version of petsc-dev.
>> I use this command that was working with a previous version:
>>
>> ./configure --PETSC_DIR=/raid0/users/cscppm59/Installers/petsc
>> --PETSC_ARCH=petsc_dev --with-debugger=idbc --with-cc=mpiicc
>> --with-cxx=mpiicpc --with-fc=mpiifort --CFLAGS="-openmp -parallel"
>> --FFLAGS="-ftz -O3 -prec-div -xSSE2 -mcmodel medium -shared-intel -openmp
>> -parallel -fpp" --with-large-file-io=1 --with-debugging=0
>> --with-mpiexec="mpirun -f ~/mpd.hosts -r ssh"
>> --with-blas-lapack-dir=/opt/intel/mkl/lib/intel64/ --with-threadcomm
>> --with-openmp --with-x=0 --download-superlu_dist --download-parmetis
>> -download-hypre -download-ml --download-metis
>>
>> and i receive this error:
>>
>>
>> *******************************************************************************
>> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
>> details):
>>
>> -------------------------------------------------------------------------------
>> Fortran libraries cannot be used with C++ compiler.
>> Run with --with-fc=0 or --with-cxx=0
>>
>> *******************************************************************************
>> File "./config/configure.py", line 272, in petsc_configure
>> framework.configure(out = sys.stdout)
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py",
>> line 935, in configure
>> child.configure()
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py",
>> line 1396, in configure
>> self.executeTest(self.checkFortranLibraries)
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py",
>> line 126, in executeTest
>> ret = test(*args,**kargs)
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py",
>> line 1050, in checkFortranLibraries
>> raise RuntimeError('Fortran libraries cannot be used with C++
>> compiler.\n Run with --with-fc=0 or --with-cxx=0')
>>
>> ================================================================================
>> Finishing Configure Run at Tue Apr 1 11:33:05 2014
>>
>> ================================================================================
>>
>
> Send configure.log for this case. You can also try
> --with-cxxlib-autodetect=0. This means you might have to put the C++
> compiler libraries in --LIBS=<>.
>
> Thanks,
>
> Matt
>
>
>> So i tried to configure using --with-cxx=0 since i use fortran and i
>> receive a new error:
>>
>>
>> *******************************************************************************
>> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
>> details):
>>
>> -------------------------------------------------------------------------------
>> Error: Hypre requires C++ compiler. None specified
>>
>> *******************************************************************************
>> File "./config/configure.py", line 272, in petsc_configure
>> framework.configure(out = sys.stdout)
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py",
>> line 935, in configure
>> child.configure()
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py",
>> line 605, in configure
>> self.executeTest(self.configureLibrary)
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py",
>> line 126, in executeTest
>> ret = test(*args,**kargs)
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py",
>> line 533, in configureLibrary
>> for location, directory, lib, incl in self.generateGuesses():
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py",
>> line 266, in generateGuesses
>> d = self.checkDownload(1)
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py",
>> line 382, in checkDownload
>> return self.getInstallDir()
>> File
>> "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py",
>> line 221, in getInstallDir
>> return os.path.abspath(self.Install())
>> File
>> "/home/users/cscppm59/Installers/petsc/config/PETSc/packages/hypre.py",
>> line 48, in Install
>> raise RuntimeError('Error: Hypre requires C++ compiler. None
>> specified')
>>
>> ================================================================================
>> Finishing Configure Run at Tue Apr 1 11:45:23 2014
>>
>> ================================================================================
>>
>> Is there someone that could give me a workaround to solve this problem?
>>
>> Thanks in advance
>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
>
>
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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