[petsc-dev] Experimental GNU make build system

Satish Balay balay at mcs.anl.gov
Wed May 22 19:08:52 CDT 2013


Ok. The 'child_info_fork::abort:' error below is due to gnumake somehow
trying to parallelize 'CLINKER /home/balay/petsc.clone/arch-gmake/lib/libpetsc.so'?

I see the same if I replace it with 'AR'. [here I'm having to use '-j 1' for AR part]

I have a successful build with 'make -j 8' - and then 'make -j '1 to
recover from AR errors. And 'make test' is successful.

my hacky changes to get this working is below.

Satish

---------
diff --git a/conf/variables b/conf/variables
index 79ce8ba..bb7746f 100644
--- a/conf/variables
+++ b/conf/variables
@@ -10,7 +10,7 @@
 #
 PETSC_LIB_DIR       = ${PETSC_DIR}/${PETSC_ARCH}/lib

-PETSC_CCPPFLAGS            = ${PETSC_CC_INCLUDES} ${PETSCFLAGS} ${CPP_FLAGS} ${CPPFLAGS} -D__INSDIR__=${LOCDIR}
+PETSC_CCPPFLAGS            = ${PETSC_CC_INCLUDES} ${PETSCFLAGS} ${CPP_FLAGS} ${CPPFLAGS}
 PETSC_FCPPFLAGS            = ${PETSC_FC_INCLUDES} ${PETSCFLAGS} ${FPP_FLAGS} ${FPPFLAGS}
 PETSC_C_SH_LIB_PATH = ${CC_LINKER_SLFLAG}${PETSC_LIB_DIR}
 PETSC_F_SH_LIB_PATH = ${FC_LINKER_SLFLAG}${PETSC_LIB_DIR}
diff --git a/gmakefile b/gmakefile
index 1577acb..e5c4a37 100644
--- a/gmakefile
+++ b/gmakefile
@@ -9,6 +9,7 @@ pkgs := sys vec mat dm ksp snes ts

 libpetsc_shared := $(LIBDIR)/libpetsc.so
 libpetscpkgs_shared := $(foreach pkg, $(pkgs), $(LIBDIR)/libpetsc$(pkg).so)
+libpetsc_static := $(LIBDIR)/libpetsc.${AR_LIB_SUFFIX}

 ifeq ($(PETSC_WITH_EXTERNAL_LIB),)
   libpetscall_shared := $(libpetscpkgs_shared)
@@ -16,7 +17,7 @@ else
   libpetscall_shared := $(libpetsc_shared)
 endif

-all : $(libpetscall_shared)
+all : $(libpetsc_static)

 .SECONDEXPANSION:              # to expand $$(@D)/.DIR

@@ -40,9 +41,9 @@ else
   cc_name := CC
 endif

-PETSC_DEPFLAGS.c := -MMD -MP
-PETSC_DEPFLAGS.cxx := -MMD -MP
-PETSC_DEPFLAGS.F := -MMD -MP
+PETSC_DEPFLAGS.c := #-MMD -MP
+PETSC_DEPFLAGS.cxx := #-MMD -MP
+PETSC_DEPFLAGS.F := #-MMD -MP

 PETSC_COMPILE.c = $(call quiet,$(cc_name)) -c $(PCC_FLAGS) $(CFLAGS) $(CCPPFLAGS) $(PETSC_DEPFLAGS.c)
 PETSC_COMPILE.cxx = $(call quiet,CXX) -c $(PCC_FLAGS) $(CFLAGS) $(CCPPFLAGS) $(PETSC_DEPFLAGS.cxx)
@@ -57,6 +58,8 @@ allobj := $(foreach pkg, $(pkgs), $(call concatlang,$(pkg)))
 # with-single-library=1 (default)
 $(libpetsc_shared) : $(allobj) | $$(@D)/.DIR
        $(call quiet,CLINKER) -shared -o $@ $^ $(PETSC_EXTERNAL_LIB_BASIC)
+$(libpetsc_static): $(allobj) | $$(@D)/.DIR
+       $(call quiet,AR) $(FAST_AR_FLAGS) $@ $^

 # with-single-library=0
 libpkg = $(foreach pkg, $1, $(LIBDIR)/libpetsc$(pkg).so)


On Wed, 22 May 2013, Satish Balay wrote:

> Looks like it can will work on windows.
> 
> For one it doesn't like gcc options like -MDD. [gives warnings] - so I removed that.
> 
> And  - cl [or win32fe?] is not liking empty LOCDIR for "-D__INSDIR__=${LOCDIR}"
> so I removed that.
> 
> The build with 'make -j 8' goes through quickly until:
> 
>   CLINKER /home/balay/petsc.clone/arch-gmake/lib/libpetsc.so
> 
> [so a static library target will perhaps fix this issue]
> 
> Satish
> 
> ---------
>   CLINKER /home/balay/petsc.clone/arch-gmake/lib/libpetsc.so
>       0 [main] sh 3108 child_info_fork::abort: can't commit memory for stack 0x2
> 8A000(90112), Win32 error 487
> /usr/bin/sh: fork: retry: Resource temporarily unavailable
>       0 [main] sh 1824 child_info_fork::abort: can't commit memory for stack 0x2
> 8A000(90112), Win32 error 487
> /usr/bin/sh: fork: retry: Resource temporarily unavailable
>       0 [main] sh 3548 child_info_fork::abort: can't commit memory for stack 0x2
> 8A000(90112), Win32 error 487
> /usr/bin/sh: fork: retry: Resource temporarily unavailable
>       0 [main] sh 2908 child_info_fork::abort: can't commit memory for stack 0x2
> 8A000(90112), Win32 error 487
> /usr/bin/sh: fork: retry: Resource temporarily unavailable
>       0 [main] sh 2872 child_info_fork::abort: can't commit memory for stack 0x2
> 8A000(90112), Win32 error 487
> /usr/bin/sh: fork: Resource temporarily unavailable
> gmakefile:59: recipe for target `/home/balay/petsc.clone/arch-gmake/lib/libpetsc
> .so' failed
> make: *** [/home/balay/petsc.clone/arch-gmake/lib/libpetsc.so] Error 254
> 
> balay at msnehalem2 ~/petsc.clone
> $
> 
> On Mon, 20 May 2013, Barry Smith wrote:
> 
> > 
> >   And does this solve the Windows problem?
> > 
> > On May 20, 2013, at 4:46 PM, Jed Brown <jedbrown at mcs.anl.gov> wrote:
> > 
> > > I just merged 'jed/gnumake' to 'next'.  I haven't added support for
> > > static libraries yet, but it should work with pretty much all other
> > > configurations using compilers that support '-MMD -MP' (tested with gcc,
> > > clang, and intel; C, C++, and Fortran; single and multiple library).
> > > 
> > >  $ make -f gmakefile -j20 PETSC_ARCH=your-choice
> > > 
> > > The makefile is 100 lines and the Python for figuring out what to
> > > include in the build is about the same (conf/gmakegen.py; neglecting
> > > python-2.4 compatibility stuff).  Simplifying the rules would reduce
> > > that, naturally.
> > > 
> > > Let me know how it works for you.
> > 
> > 
> 
> 




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