[petsc-dev] The problem about running an example in PETSc

Lulu Liu lulu.liu at kaust.edu.sa
Tue Apr 30 13:09:05 CDT 2013


src/ts/examples/tutorials/ex29.c I want domain partition is 1x2

mpiexec -n 2 ./ex29 -da_refine 4 -ts_max_steps 10 -ts_rtol 1e-3 -ts_atol
1e-3   -ts_type arkimex -ts_monitor -snes_monitor -snes_type ngmres
-npc_snes_type nasm -npc_snes_nasm_type restrict -da_overlap 4
 -da_processors_x 1 -da_processors_y 2


0 TS dt 0.05 time 0
    0 SNES Function norm 1.762942085583e+01
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Argument out of range!
[0]PETSC ERROR: Too many processors in Y direction: 2 1!
[0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message
------------------------------------
[1]PETSC ERROR: Argument out of range!
[1]PETSC ERROR: Too many processors in Y direction: 2 1!
[1]PETSC ERROR:
------------------------------------------------------------------------
[1]PETSC ERROR: Petsc Development GIT revision:
bc51b945dfb4f1d1228fb677a132a806066a0f32  GIT Date: 2013-04-29 10:22:29
-0500
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development GIT revision:
bc51b945dfb4f1d1228fb677a132a806066a0f32  GIT Date: 2013-04-29 10:22:29
-0500
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex29 on a arch-basic named kl-12681.local by liul Tue Apr
30 21:07:37 2013
[0]PETSC ERROR: [1]PETSC ERROR: See docs/changes/index.html for recent
updates.
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1]PETSC ERROR: See docs/index.html for manual pages.
[1]PETSC ERROR:
------------------------------------------------------------------------
[1]PETSC ERROR: ./ex29 on a arch-basic named kl-12681.local by liul Tue Apr
30 21:07:37 2013
[1]PETSC ERROR: Libraries linked from /Users/liul/soft/petsc/arch-basic/lib
[1]PETSC ERROR: Configure run at Tue Apr 30 15:46:16 2013
[1]PETSC ERROR: Configure options --download-cmake --download-f-blas-lapack
--download-mpich --with-cc=gcc --with-fc=gfortran PETSC_ARCH=arch-basic
[1]PETSC ERROR:
------------------------------------------------------------------------
[1]PETSC ERROR: Libraries linked from /Users/liul/soft/petsc/arch-basic/lib
[0]PETSC ERROR: Configure run at Tue Apr 30 15:46:16 2013
[0]PETSC ERROR: Configure options --download-cmake --download-f-blas-lapack
--download-mpich --with-cc=gcc --with-fc=gfortran PETSC_ARCH=arch-basic
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: DMSetUp_DA_2D() line 266 in
/Users/liul/soft/petsc/src/dm/impls/da/da2.c
DMSetUp_DA_2D() line 266 in /Users/liul/soft/petsc/src/dm/impls/da/da2.c
[1]PETSC ERROR: DMSetUp_DA() line 27 in
/Users/liul/soft/petsc/src/dm/impls/da/dareg.c
[1]PETSC ERROR: DMSetUp() line 469 in
/Users/liul/soft/petsc/src/dm/interface/dm.c
[1]PETSC ERROR: DMDACreate2d() line 888 in
/Users/liul/soft/petsc/src/dm/impls/da/da2.c
[1]PETSC ERROR: [0]PETSC ERROR: DMSetUp_DA() line 27 in
/Users/liul/soft/petsc/src/dm/impls/da/dareg.c
[0]PETSC ERROR: DMSetUp() line 469 in
/Users/liul/soft/petsc/src/dm/interface/dm.c
DMDAGetReducedDMDA() line 389 in
/Users/liul/soft/petsc/src/dm/impls/da/dacorn.c
[1]PETSC ERROR: CoefficientSubDomainRestrictHook() line 92 in
src/ts/examples/tutorials/ex29.c
[1]PETSC ERROR: DMCreateDomainDecomposition() line 1314 in
/Users/liul/soft/petsc/src/dm/interface/dm.c
[1]PETSC ERROR: SNESSetUp_NASM() line 112 in
/Users/liul/soft/petsc/src/snes/impls/nasm/nasm.c
[1]PETSC ERROR: SNESSetUp() line 2633 in
/Users/liul/soft/petsc/src/snes/interface/snes.c
[0]PETSC ERROR: DMDACreate2d() line 888 in
/Users/liul/soft/petsc/src/dm/impls/da/da2.c
[0]PETSC ERROR: DMDAGetReducedDMDA() line 389 in
/Users/liul/soft/petsc/src/dm/impls/da/dacorn.c
[0]PETSC ERROR: CoefficientSubDomainRestrictHook() line 92 in
src/ts/examples/tutorials/ex29.c
[0]PETSC ERROR: [1]PETSC ERROR: SNESSolve() line 3743 in
/Users/liul/soft/petsc/src/snes/interface/snes.c
[1]PETSC ERROR: SNESSolve_NGMRES() line 249 in
/Users/liul/soft/petsc/src/snes/impls/ngmres/snesngmres.c
[1]PETSC ERROR: SNESSolve() line 3755 in
/Users/liul/soft/petsc/src/snes/interface/snes.c
[1]PETSC ERROR: TSStep_ARKIMEX() line 765 in
/Users/liul/soft/petsc/src/ts/impls/arkimex/arkimex.c
[1]PETSC ERROR: TSStep() line 2457 in
/Users/liul/soft/petsc/src/ts/interface/ts.c
[1]PETSC ERROR: TSSolve() line 2584 in
/Users/liul/soft/petsc/src/ts/interface/ts.c
[1]PETSC ERROR: main() line 163 in src/ts/examples/tutorials/ex29.c
DMCreateDomainDecomposition() line 1314 in
/Users/liul/soft/petsc/src/dm/interface/dm.c
[0]PETSC ERROR: SNESSetUp_NASM() line 112 in
/Users/liul/soft/petsc/src/snes/impls/nasm/nasm.c
[0]PETSC ERROR: SNESSetUp() line 2633 in
/Users/liul/soft/petsc/src/snes/interface/snes.c
[0]PETSC ERROR: SNESSolve() line 3743 in
/Users/liul/soft/petsc/src/snes/interface/snes.c
[0]PETSC ERROR: SNESSolve_NGMRES() line 249 in
/Users/liul/soft/petsc/src/snes/impls/ngmres/snesngmres.c
[0]PETSC ERROR: SNESSolve() line 3755 in
/Users/liul/soft/petsc/src/snes/interface/snes.c
[0]PETSC ERROR: application called MPI_Abort(MPI_COMM_WORLD, 63) - process 1
[cli_1]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 63) - process 1
TSStep_ARKIMEX() line 765 in
/Users/liul/soft/petsc/src/ts/impls/arkimex/arkimex.c
[0]PETSC ERROR: TSStep() line 2457 in
/Users/liul/soft/petsc/src/ts/interface/ts.c
[0]PETSC ERROR: TSSolve() line 2584 in
/Users/liul/soft/petsc/src/ts/interface/ts.c
[0]PETSC ERROR: main() line 163 in src/ts/examples/tutorials/ex29.c
application called MPI_Abort(MPI_COMM_WORLD, 63) - process 0
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 63) - process 0

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