[petsc-dev] petsc-dev/buildsystem is broken on OS X.6+openmpi-nofortran

Aron Ahmadia aron at ahmadia.net
Sun Oct 7 10:28:57 CDT 2012


Apologies, didn't mean to send the mondo config.log to -dev.

A

On Sun, Oct 7, 2012 at 6:28 PM, Aron Ahmadia <aron at ahmadia.net> wrote:

> I'm able to reproduce with shared libraries enabled and disabled.  Your
> nightly logs aren't indicating failures as far as I can tell.
>
> changeset:   24541:729963bc657c
> tag:         tip
> user:        Stefano Zampini <stefano.zampini at gmail.com>
> date:        Sat Oct 06 13:39:31 2012 +0200
> summary:     Rearranged some deallocations when building FETIDP mat.
> (same failure with 2 processes), I'm looking into whether any of the
> specific configure options (python/shared libraries) triggers the failure.
>
> ~/s/petsc ❯❯❯ make PETSC_DIR=/Users/aron/sandbox/petsc
> PETSC_ARCH=arch-darwin-c-debug test
> Running test examples to verify correct installation
> Using PETSC_DIR=/Users/aron/sandbox/petsc and
> PETSC_ARCH=arch-darwin-c-debug
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI
> process
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> [peregrine:31992] *** Process received signal ***
> [peregrine:31992] Signal: Segmentation fault (11)
> [peregrine:31992] Signal code: Address not mapped (1)
> [peregrine:31992] Failing at address: 0x440000b0
> [peregrine:31992] [ 0] 2   libSystem.B.dylib
> 0x00007fff846391ba _sigtramp + 26
> [peregrine:31992] [ 1] 3   ???
> 0x0000000101434fd0 0x0 + 4316155856
> [peregrine:31992] [ 2] 4   libpetsc.dylib
>  0x0000000100118456 PetscInitialize + 1424
> [peregrine:31992] [ 3] 5   ex19
>  0x000000010000110f main + 43
> [peregrine:31992] [ 4] 6   ex19
>  0x00000001000010dc start + 52
> [peregrine:31992] [ 5] 7   ???
> 0x0000000000000007 0x0 + 7
> [peregrine:31992] *** End of error message ***
> mpiexec noticed that job rank 0 with PID 31992 on node peregrine.local
> exited on signal 11 (Segmentation fault).
>
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