[petsc-dev] metis config error on XT4

[Mark F. Adams]

This did not seem to help.
Mark

On Nov 30, 2011, at 5:35 PM, Jack Poulson wrote:

> I have actually run into a similar problem with ParMetis. I fixed it on my end by changing the ParMetis CMakeLists.txt lines
> 
> set(GKLIB_PATH METIS/GKlib CACHE PATH "path to GKlib")
> set(METIS_PATH METIS CACHE PATH "path to METIS")
> 
> to
> 
> set(GKLIB_PATH ${CMAKE_CURRENT_SOURCE_DIR}/metis/GKlib CACHE PATH "path to GKlib
> ")
> set(METIS_PATH ${CMAKE_CURRENT_SOURCE_DIR}/metis CACHE PATH "path to METIS")
> 
> Your mileage may vary.
> 
> Jack
> 
> On Wed, Nov 30, 2011 at 4:32 PM, Aron Ahmadia <aron.ahmadia at kaust.edu.sa> wrote:
> Mark,
> 
> Sorry, no help here, except that cmake is pretty easy to install from source, so that might be my recommendation if you don't want to wait for help from their systems team.
> 
> A
> 
> On Thu, Dec 1, 2011 at 1:30 AM, Mark F. Adams <mark.adams at columbia.edu> wrote:
> Thanks Tim, I do use gcc. And this is on Franklin at NERSC.
> 
> Cmake is just kicking my ass, now I get (appended).
> 
> I do have an old version of cmake here:
> 
> madams/petsc-dev> which cmake
> /usr/common/usg/cmake/2.8.3/bin/cmake
> 
> any ideas?
> Mark
> 
> ===============================================================================                                           Configuring METIS; this may take several minutes                                                              ===============================================================================                                                                                                                                                         *******************************************************************************
>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
> -------------------------------------------------------------------------------
> Error running configure on METIS: Could not execute "cd /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make distclean && make config prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" doubleprecision=1":
> rm -rf build/Linux-x86_64
> rm -rf build/Linux-x86_64
> mkdir -p build/Linux-x86_64
> cd build/Linux-x86_64 && cmake /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
> -- The C compiler identification is GNU
> -- The CXX compiler identification is GNU
> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc
> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++
> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Configuring incomplete, errors occurred!
> CMake Error at CMakeLists.txt:21 (include):
>   include could not find load file:
> 
>     /GKlibSystem.cmake
> 
> 
> make: *** [config] Error 1
> 
> 
> 
> On Nov 30, 2011, at 4:00 PM, Tim Gallagher wrote:
> 
>> Without knowing how your system is configured, this may not help. But on the Cray systems we use (they have the modules package installed), if we are using a compiler other than GNU (Intel, PGI, etc) but we want to use cmake, we still have to load the gcc module (not the programming environment, just the module). 
>> 
>> On our machines, it means we may load the PrgEnv-Intel module (so cc points to icc, ftn points to ifort, etc) but we also have to load gcc/<version> to get cmake to work. 
>> 
>> Tim
>> 
>> From: "Aron Ahmadia" <aron.ahmadia at kaust.edu.sa>
>> To: "For users of the development version of PETSc" <petsc-dev at mcs.anl.gov>
>> Sent: Wednesday, November 30, 2011 3:49:25 PM
>> Subject: Re: [petsc-dev] metis config error on XT4
>> 
>> looks like a broken cmake...
>> 
>> What happens when you just run: cmake by itself?
>> 
>> A
>> 
>> On Wed, Nov 30, 2011 at 11:47 PM, Mark F. Adams <mark.adams at columbia.edu> wrote:
>> I'm getting this error on Franklin at NERSC:
>>                                                                                                                 *******************************************************************************
>>         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
>> -------------------------------------------------------------------------------
>> Error running configure on METIS: Could not execute "cd /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make distclean && make config prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" doubleprecision=1":
>> rm -rf build/Linux-x86_64
>> rm -rf build/Linux-x86_64
>> mkdir -p build/Linux-x86_64
>> cd build/Linux-x86_64 && cmake /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
>> cmake: /opt/gcc/4.5.3/snos/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by cmake)
>> make: *** [config] Error 1
>> *******************************************************************************
>> 
>> any ideas?
>> 
>> Mark
>> 
>> 
>> 
> 
> 
> 
> 

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