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Hi Wei-keng, .. . Same problem. I am attaching my build procedure. I even tried hacking the Makefile and libtool, to no effect. Best regards, Max --- On Mon, Mar 11, 2024 at 03: 12: 27PM +0000, Wei-Keng Liao wrote: > Hi, Max > > Could
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<meta charset="us-ascii"></head><body><pre style="font-family: sans-serif; font-size: 100%; white-space: pre-wrap; word-wrap: break-word">Hi Wei-keng,
...Same problem. I am attaching my build procedure.
I even tried hacking the Makefile and libtool, to no effect.
Best regards,
Max
---
On Mon, Mar 11, 2024 at 03:12:27PM +0000, Wei-Keng Liao wrote:
> Hi, Max
>
> Could you give the release candidate 1.13.0.rc1 a try?
> The configure utility files have been updated since 1.12.3,
> which may fix the problem.
>
> <a href="https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/raw/master/Release/pnetcdf-1.13.0.rc1.tar.gz__;!!G_uCfscf7eWS!a5CUuhrI_6-I64L3xNUw7seaEJNjw0z9nceIWHJDEOgBnmJkm-0lP0l6XZHGtEVNF_tpw5WxkYTGGGv0Bohgc5nleUKp$">https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/raw/master/Release/pnetcdf-1.13.0.rc1.tar.gz__;!!G_uCfscf7eWS!a5CUuhrI_6-I64L3xNUw7seaEJNjw0z9nceIWHJDEOgBnmJkm-0lP0l6XZHGtEVNF_tpw5WxkYTGGGv0Bohgc5nleUKp$</a>
>
> Wei-keng
>
> On Mar 11, 2024, at 6:36 AM, Max R. Dechantsreiter <max@performancejones.com> wrote:
>
> Hello Wei-Keng,
>
> Building PnetCDF 1.12.3 with AOCC compilers, I found that
> libamdlm is linked after libm ('-lm -lamdlibm') instead of
> before as it should be; so far I have not found any way to
> change this. If I set LIBS='-lamdlibm' and configure, both
> FCLIBS and FLIBS in the resulting Makefile are assigned
>
> -L/home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/bin/../lib -L/lib -L/usr/lib -L/home/maxd/AOCC/opt/amd/aocl/4.2.0/aocc/lib -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib32 -L. -lamdlibm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lflangmain -lflang -lflangrti -lpgmath -lquadmath -lompstub -lm -lrt -lpthread
>
> which is promising. However, in the link it's wrong:
>
> libtool: link: /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/bin/mpif90 -I../../src/binding/f90 -ffree-form -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -march=broadwell -mtune=broadwell -O3 -freciprocal-math -fPIC -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -L../../src/libs /home/maxd/AOCC/Build/pnetcdf-1.12.3/src/libs/.libs/libpnetcdf.a -L/home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_usempif08.so /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_usempi_ignore_tkr.so /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_mpifh.so -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi.so /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libopen-pal.so -lpthread -lrt /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libpmix.so -lutil -ldl -levent_core -levent_pthreads /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib/libhwloc.so -lm -lamdlibm -pthread -rpath /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib
>
> Any suggestion for how to remedy this?
>
> Best regards,
>
> Max
> ---
> Max R. Dechantsreiter
> President
> Performance Jones L.L.C.
> max@performancejones.com
> Skype: PerformanceJones (UTC+01:00)
> +1 414 446-3100 (telephone/voicemail)
> https://urldefense.com/v3/__http://www.linkedin.com/in/benchmarking__;!!Dq0X2DkFhyF93HkjWTBQKhk!XoFfRmNF4v6X3b67Y51DU9xey_PcSw1VYyTqFCWAsLtD1l0FSMXpDqzdhbHEA9T8wvV7jXjXnH3AaDZYp90LdZg$
>
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