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 Hi, Max Could you give the release candidate 1. 13. 0. rc1 a try? The configure utility files have been updated since 1. 12. 3, which may fix the problem. https: //github. com/Parallel-NetCDF/Parallel-NetCDF. github. io/raw/master/Release/pnetcdf-1. 13. 0. rc1. tar. gz
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Hi, Max
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<div>Could you give the release candidate 1.13.0.rc1 a try?</div>
<div>The configure utility files have been updated since 1.12.3,</div>
<div>which may fix the problem.</div>
<div>
<div><br>
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<div><a href="https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/raw/master/Release/pnetcdf-1.13.0.rc1.tar.gz__;!!G_uCfscf7eWS!fN1RlWwczJ-wz3P-YE8dVjmvn6sQ13R1rpou-qzZ_Pk82rg01UcI6gtqJTvCabCBtBDjCrvVzjdqnphUjP-2hPez_b9Vu_E$">https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/raw/master/Release/pnetcdf-1.13.0.rc1.tar.gz</a><br>
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<div><br>
<div>Wei-keng </div>
<div><br>
<blockquote type="cite">
<div>On Mar 11, 2024, at 6:36 AM, Max R. Dechantsreiter <max@performancejones.com> wrote:</div>
<br class="Apple-interchange-newline">
<div>
<div>Hello Wei-Keng,<br>
<br>
Building PnetCDF 1.12.3 with AOCC compilers, I found that<br>
libamdlm is linked after libm ('-lm -lamdlibm') instead of<br>
before as it should be; so far I have not found any way to<br>
change this.  If I set LIBS='-lamdlibm' and configure, both<br>
FCLIBS and FLIBS in the resulting Makefile are assigned<br>
<br>
-L/home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/bin/../lib -L/lib -L/usr/lib -L/home/maxd/AOCC/opt/amd/aocl/4.2.0/aocc/lib
 -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib32 -L. -lamdlibm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lflangmain -lflang -lflangrti -lpgmath -lquadmath -lompstub -lm -lrt -lpthread<br>
<br>
which is promising.  However, in the link it's wrong:<br>
<br>
libtool: link: /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/bin/mpif90 -I../../src/binding/f90 -ffree-form -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -march=broadwell -mtune=broadwell -O3 -freciprocal-math -fPIC -o flash_benchmark_io get_mfluid_property.o
 flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o  -L../../src/libs /home/maxd/AOCC/Build/pnetcdf-1.12.3/src/libs/.libs/libpnetcdf.a -L/home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_usempif08.so
 /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_usempi_ignore_tkr.so /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_mpifh.so -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi.so
 /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libopen-pal.so -lpthread -lrt /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libpmix.so -lutil -ldl -levent_core -levent_pthreads /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib/libhwloc.so
 -lm -lamdlibm -pthread -rpath /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib<br>
<br>
Any suggestion for how to remedy this?<br>
<br>
Best regards,<br>
<br>
Max<br>
---<br>
Max R. Dechantsreiter<br>
President<br>
Performance Jones L.L.C.<br>
max@performancejones.com<br>
Skype: PerformanceJones (UTC+01:00)<br>
+1 414 446-3100 (telephone/voicemail)<br>
https://urldefense.com/v3/__http://www.linkedin.com/in/benchmarking__;!!Dq0X2DkFhyF93HkjWTBQKhk!XoFfRmNF4v6X3b67Y51DU9xey_PcSw1VYyTqFCWAsLtD1l0FSMXpDqzdhbHEA9T8wvV7jXjXnH3AaDZYp90LdZg$
<br>
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</blockquote>
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