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Hi, Max Could you modify build_pnetcdf. txt to compile a simple F90 program (example programs can be found from MPICH repo in https: //github. com/pmodels/mpich/tree/main/examples) This is to see if the environment variables set in build_pnetcdf. txt
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Hi, Max
<div><br>
</div>
<div>Could you modify <span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);">build_pnetcdf.txt to compile a simple F90 program</span></div>
<div><span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);">(example programs can be found from MPICH repo in</span></div>
<div><a href="https://urldefense.us/v3/__https://github.com/pmodels/mpich/tree/main/examples__;!!G_uCfscf7eWS!ZybsrnnDV1S14dcgjy_1LvdWBCaETPr4Q1Otck0NxOd88RAKBM7zkJ83Q92kLQB4fmAjZaQ61tIuZvbki1_Pap693pJ7Luw$">https://github.com/pmodels/mpich/tree/main/examples</a>)</div>
<div><span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);"><br>
</span></div>
<div><span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);">This is to see if the environment variables set in </span><span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);">build_pnetcdf.txt</span></div>
<div><span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);">also work without PnetCDF? For example, run this command:</span></div>
<div><span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);"> mpifort </span><font color="#000000"><span style="caret-color: rgb(0, 0, 0);">pi3f90.f90</span></font></div>
<div><font color="#000000"><span style="caret-color: rgb(0, 0, 0);"><br>
</span></font></div>
<div><font color="#000000"><span style="caret-color: rgb(0, 0, 0);">If that works, could you try this configure command, without running</span></font></div>
<div><span style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);">build_pnetcdf.txt? i.e. no environment variables are set.</span></div>
<div> ./configure --with-mpi=$HOME/AOCC/opt/amd/ompi/5.0.2</div>
<div>
<div><br>
</div>
<div>If the above failed, please send me file config.log.</div>
<div><br>
</div>
<div>Wei-keng </div>
<div><br>
<blockquote type="cite">
<div>On Mar 11, 2024, at 10:37 AM, Max R. Dechantsreiter <max@performancejones.com> wrote:</div>
<br class="Apple-interchange-newline">
<div><span style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Hi
Wei-keng,</span><br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">...Same
problem. I am attaching my build procedure.</span><br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">I
even tried hacking the Makefile and libtool, to no effect.</span><br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Best
regards,</span><br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Max</span><br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">---</span><br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">On
Mon, Mar 11, 2024 at 03:12:27PM +0000, Wei-Keng Liao wrote:</span><br style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<blockquote type="cite" style="caret-color: rgb(0, 0, 0); font-family: Monaco; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
Hi, Max<br>
<br>
Could you give the release candidate 1.13.0.rc1 a try?<br>
The configure utility files have been updated since 1.12.3,<br>
which may fix the problem.<br>
<br>
<a href="https://urldefense.com/v3/__https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/raw/master/Release/pnetcdf-1.13.0.rc1.tar.gz__;!!Dq0X2DkFhyF93HkjWTBQKhk!QaDTsobUHYLC8K-towJw_kn5rctCrB6wv3OdDy6h4_9yKnUNepXT1b2RCV-EcqmdpdkcMAcwrT2IN4hDGUZIk9s$">https://urldefense.com/v3/__https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/raw/master/Release/pnetcdf-1.13.0.rc1.tar.gz__;!!Dq0X2DkFhyF93HkjWTBQKhk!QaDTsobUHYLC8K-towJw_kn5rctCrB6wv3OdDy6h4_9yKnUNepXT1b2RCV-EcqmdpdkcMAcwrT2IN4hDGUZIk9s$</a><span class="Apple-converted-space"> </span><br>
<br>
Wei-keng<br>
<br>
On Mar 11, 2024, at 6:36 AM, Max R. Dechantsreiter <max@performancejones.com> wrote:<br>
<br>
Hello Wei-Keng,<br>
<br>
Building PnetCDF 1.12.3 with AOCC compilers, I found that<br>
libamdlm is linked after libm ('-lm -lamdlibm') instead of<br>
before as it should be; so far I have not found any way to<br>
change this. If I set LIBS='-lamdlibm' and configure, both<br>
FCLIBS and FLIBS in the resulting Makefile are assigned<br>
<br>
-L/home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/bin/../lib -L/lib -L/usr/lib -L/home/maxd/AOCC/opt/amd/aocl/4.2.0/aocc/lib
-L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib32 -L. -lamdlibm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lflangmain -lflang -lflangrti -lpgmath -lquadmath -lompstub -lm -lrt -lpthread<br>
<br>
which is promising. However, in the link it's wrong:<br>
<br>
libtool: link: /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/bin/mpif90 -I../../src/binding/f90 -ffree-form -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -march=broadwell -mtune=broadwell -O3 -freciprocal-math -fPIC -o flash_benchmark_io get_mfluid_property.o
flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -L../../src/libs /home/maxd/AOCC/Build/pnetcdf-1.12.3/src/libs/.libs/libpnetcdf.a -L/home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_usempif08.so
/home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_usempi_ignore_tkr.so /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi_mpifh.so -L/home/maxd/AOCC/opt/amd/aocc/4.2.0/lib /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libmpi.so
/home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libopen-pal.so -lpthread -lrt /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib/libpmix.so -lutil -ldl -levent_core -levent_pthreads /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib/libhwloc.so
-lm -lamdlibm -pthread -rpath /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/openmpi-5.0.2_aocc-4.2.0/lib -rpath /home/maxd/AOCC/opt/amd/ompi/hwloc-2.10.0_aocc-4.2.0/lib<br>
<br>
Any suggestion for how to remedy this?<br>
<br>
Best regards,<br>
<br>
Max<br>
---<br>
Max R. Dechantsreiter<br>
President<br>
Performance Jones L.L.C.<br>
max@performancejones.com<br>
Skype: PerformanceJones (UTC+01:00)<br>
+1 414 446-3100 (telephone/voicemail)<br>
https://urldefense.com/v3/__http://www.linkedin.com/in/benchmarking__;!!Dq0X2DkFhyF93HkjWTBQKhk!XoFfRmNF4v6X3b67Y51DU9xey_PcSw1VYyTqFCWAsLtD1l0FSMXpDqzdhbHEA9T8wvV7jXjXnH3AaDZYp90LdZg$<br>
<br>
</blockquote>
<span id="cid:E74719CA-0F0D-46F2-9962-2C335EB9101F"><build_pnetcdf.txt></span></div>
</blockquote>
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