<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;">
<div>
<div><br>
</div>
<div>Hi Jim:</div>
<div><br>
</div>
<div>In my case, README.SGI gave me the clue about setting the “LIBS” variable on the command line when running configure:</div>
<div><br>
</div>
<div>
<div> ./configure --prefix=$PREFIX \</div>
<div> --disable-cxx MPICC="$MPICC" MPIF77="$MPIF77" \</div>
<div> MPIF90="$MPIF90" CC="$CC" F77="$F77" F90="$F90" \</div>
<div> FC="$FC" TEST_SEQRUN="$TEST_SEQRUN" \</div>
<div> TEST_MPIRUN="$TEST_MPIRUN" \</div>
<div> --enable-large-file-test \</div>
<div> LIBS="-lmpi” </div>
</div>
<div><br>
</div>
<div>It’s not clear to me why that is necessary (I have MPICC, MPIF77, and MPIF90 set to the SGI MPT wrappers), but it is necessary in my case.</div>
<div><br>
</div>
<div>-Eric</div>
<div><br>
</div>
<div>
<div>Eric M. Kemp (SSAI)
<div>NASA/GSFC </div>
<div>Mail Code: 606 </div>
<div>Greenbelt, MD 20771 </div>
<div>301.286.9768 </div>
<div><a href="eric.kemp@nasa.gov">eric.kemp@nasa.gov</a></div>
<div><a href="eric.kemp@ssaihq.com">eric.kemp@ssaihq.com</a><br>
</div>
</div>
<div style="font-size: 16px; font-family: Arial, sans-serif; "><font face="Courier,Courier New"><span style="font-size:11pt"><br>
</span></font></div>
</div>
</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div style="font-family:Lucida Grande; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt">
<span style="font-weight:bold">From: </span><<a href="mailto:parallel-netcdf-bounces@lists.mcs.anl.gov">parallel-netcdf-bounces@lists.mcs.anl.gov</a>> on behalf of Jim Edwards <<a href="mailto:jedwards@ucar.edu">jedwards@ucar.edu</a>><br>
<span style="font-weight:bold">Date: </span>Wednesday, September 21, 2016 at 4:28 PM<br>
<span style="font-weight:bold">To: </span>Wei-keng Liao <<a href="mailto:wkliao@eecs.northwestern.edu">wkliao@eecs.northwestern.edu</a>><br>
<span style="font-weight:bold">Cc: </span>"<a href="mailto:parallel-netcdf@mcs.anl.gov">parallel-netcdf@mcs.anl.gov</a>" <<a href="mailto:parallel-netcdf@mcs.anl.gov">parallel-netcdf@mcs.anl.gov</a>><br>
<span style="font-weight:bold">Subject: </span>Re: pnetcdf-1.7.0 and MPT<br>
</div>
<div><br>
</div>
<div>
<div>
<div dir="ltr">
<div class="gmail_default" style="font-family:comic sans ms,sans-serif;color:#38761d">
There wasn't anything useful in the README.SGI as far as I could tell. I am exploring getting an update to MPT/2.15 which may solve the problem.</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Sep 21, 2016 at 11:53 AM, Jim Edwards <span dir="ltr">
<<a href="mailto:jedwards@ucar.edu" target="_blank">jedwards@ucar.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div class="gmail_default" style="font-family:comic sans ms,sans-serif;color:#38761d">
Thanks - I'll give that a try and let you know.</div>
</div>
<div class="HOEnZb">
<div class="h5">
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Sep 21, 2016 at 11:50 AM, Wei-keng Liao <span dir="ltr">
<<a href="mailto:wkliao@eecs.northwestern.edu" target="_blank">wkliao@eecs.northwestern.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi, Jim, Michael<br>
<br>
Eric Kemp @ NASA/GSFC also encountered a similar error message.<br>
<a href="http://lists.mcs.anl.gov/pipermail/parallel-netcdf/2016-June/001854.html" rel="noreferrer" target="_blank">http://lists.mcs.anl.gov/piper<wbr>mail/parallel-netcdf/2016-<wbr>June/001854.html</a><br>
<br>
It seems like he was able to solve the problem by trying the build recipe<br>
in README.SGI. Let me know whether this works for you.<br>
<span><font color="#888888"><br>
Wei-keng<br>
</font></span>
<div>
<div><br>
On Sep 21, 2016, at 12:36 PM, Michael Raymond wrote:<br>
<br>
> Are you passing a count of 0? That’s probably what MPT is getting caught on. I can have a fix for you to try in a few minutes if so.<br>
><br>
> Michael A. Raymond<br>
> SGI MPT Team Leader<br>
> <a href="tel:1%20%28651%29%20683-7523" value="+16516837523" target="_blank">1 (651) 683-7523</a><br>
><br>
><br>
><br>
>> On Sep 21, 2016, at 12:26, Jim Edwards <<a href="mailto:jedwards@ucar.edu" target="_blank">jedwards@ucar.edu</a>> wrote:<br>
>><br>
>> Trying to use parallel netcdf on an SGI system with mpi/2.14 I am getting the following error:<br>
>><br>
>> MPT ERROR: rank:10, function:MPI_TYPE_CREATE_HVECT<wbr>OR, Invalid argument<br>
>><br>
>> with a traceback:<br>
>><br>
>> MPT: #7 0x00002aaaaf46dd2a in PMPI_Type_create_hindexed (count=<optimized out>,<br>
>><br>
>> MPT: blocklens=0x0, indices=0xbf71470, oldtype=27, newtype=0x7fffffff5588)<br>
>><br>
>> MPT: at type_create_hindexed.c:23<br>
>><br>
>> MPT: #8 0x0000000000cc01ac in fillerup_aggregate (ncp=0x4ff9,<br>
>><br>
>> MPT: old_ncp=0x7fffffff4990) at fill.c:727<br>
>><br>
>> MPT: #9 0x0000000000cb5141 in ncmpii_NC_enddef (ncp=0x4ff9,<br>
>><br>
>> MPT: h_align=140737488308624, h_minfree=0, v_align=-1, v_minfree=20438,<br>
>><br>
>> MPT: r_align=0) at nc.c:1187<br>
>><br>
>> MPT: #10 0x0000000000cb42fb in ncmpii_enddef (ncp=0x4ff9) at nc.c:1318<br>
>><br>
>><br>
>> MPT: #11 0x0000000000ca8d7f in ncmpi_enddef (ncid=20473) at mpinetcdf.c:806<br>
>><br>
>><br>
>><br>
>> Have you seen this before or have an idea of a fix?<br>
>><br>
>><br>
>><br>
>> Thanks,<br>
>><br>
>><br>
>><br>
>><br>
>> --<br>
>> Jim Edwards<br>
>><br>
>> CESM Software Engineer<br>
>> National Center for Atmospheric Research<br>
>> Boulder, CO<br>
><br>
<br>
</div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div data-smartmail="gmail_signature">
<div dir="ltr">
<div>
<div>
<div>Jim Edwards<br>
<br>
</div>
<font size="1">CESM Software Engineer<br>
</font></div>
<font size="1">National Center for Atmospheric Research<br>
</font></div>
<font size="1">Boulder, CO</font> <br>
</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div class="gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">
<div>
<div>
<div>Jim Edwards<br>
<br>
</div>
<font size="1">CESM Software Engineer<br>
</font></div>
<font size="1">National Center for Atmospheric Research<br>
</font></div>
<font size="1">Boulder, CO</font> <br>
</div>
</div>
</div>
</div>
</div>
</span>
</body>
</html>