This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by parallel-netcdf configure 1.6.1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure CC=mpiicc CXX=mpiicpc FC=mpiifort --prefix=/export/home/dkumar/RLIB CPPFLAGS=-I/export/home/dkumar/RLIB/include LDFLAGS=-L/export/home/dkumar/RLIB/lib ## --------- ## ## Platform. ## ## --------- ## hostname = weather.jnu.ac.in uname -m = x86_64 uname -r = 2.6.32-279.14.1.el6.x86_64 uname -s = Linux uname -v = #1 SMP Tue Nov 6 23:43:09 UTC 2012 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /export/home/dkumar/RLIB/bin PATH: /opt/intel/impi/4.1.0.024/intel64/bin PATH: /opt/intel/impi/4.1.0.024/intel64/bin PATH: /opt/intel/impi/4.1.0.024/intel64/bin PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64 PATH: /opt/intel/impi/4.1.0.024/intel64/bin PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/impi/4.1.0.024/intel64/bin PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/mpirt/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64 PATH: /opt/intel/composer_xe_2013.1.117/bin/intel64_mic PATH: /opt/intel/composer_xe_2013.1.117/debugger/gui/intel64 PATH: /opt/openmpi/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /opt/bio/ncbi/bin PATH: /opt/bio/mpiblast/bin PATH: /opt/bio/EMBOSS/bin PATH: /opt/bio/clustalw/bin PATH: /opt/bio/tcoffee/bin PATH: /opt/bio/hmmer/bin PATH: /opt/bio/phylip/exe PATH: /opt/bio/mrbayes PATH: /opt/bio/fasta PATH: /opt/bio/glimmer/bin PATH: /opt/bio/glimmer/scripts PATH: /opt/bio/gromacs/bin PATH: /opt/bio/gmap/bin PATH: /opt/bio/tigr/bin PATH: /opt/bio/autodocksuite/bin PATH: /opt/bio/wgs/bin PATH: /opt/eclipse PATH: /opt/ganglia/bin PATH: /opt/ganglia/sbin PATH: /usr/java/latest/bin PATH: /opt/maven/bin PATH: /opt/pdsh/bin PATH: /opt/rocks/bin PATH: /opt/rocks/sbin PATH: /opt/condor/bin PATH: /opt/condor/sbin PATH: /opt/gridengine/bin/linux-x64 PATH: /opt/apps/hdf5-1.8.5/bin PATH: /opt/apps/netcdf-4.1.2/bin PATH: /opt/apps/NETCDF/intel-netcdf/bin PATH: /opt/apps/JASPER/intel-jasper/bin PATH: /opt/apps/LIBPNG/intel-libpng/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /opt/apps/hdf5-1.8.5/bin PATH: /opt/apps/netcdf-4.1.2/bin PATH: /opt/apps/NETCDF/intel-netcdf/bin PATH: /opt/apps/JASPER/intel-jasper/bin PATH: /opt/apps/LIBPNG/intel-libpng/bin PATH: /home/dkumar/bin/ PATH: /export/home/dkumar/RLIB/bin/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:3283: checking for mpicc configure:3301: found /opt/intel/impi/4.1.0.024/intel64/bin/mpicc configure:3313: result: /opt/intel/impi/4.1.0.024/intel64/bin/mpicc configure:3386: checking for gcc configure:3413: result: /opt/intel/impi/4.1.0.024/intel64/bin/mpicc configure:3642: checking for C compiler version configure:3651: /opt/intel/impi/4.1.0.024/intel64/bin/mpicc --version >&5 gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3662: $? = 0 configure:3651: /opt/intel/impi/4.1.0.024/intel64/bin/mpicc -v >&5 mpigcc for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2012, Intel Corporation. All rights reserved. Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC) configure:3662: $? = 0 configure:3651: /opt/intel/impi/4.1.0.024/intel64/bin/mpicc -V >&5 gcc: '-V' must come at the start of the command line configure:3662: $? = 1 configure:3651: /opt/intel/impi/4.1.0.024/intel64/bin/mpicc -qversion >&5 gcc: unrecognized option '-qversion' /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' collect2: ld returned 1 exit status configure:3662: $? = 1 configure:3682: checking whether the C compiler works configure:3704: /opt/intel/impi/4.1.0.024/intel64/bin/mpicc -O3 -xHost -axSSE4.2 -fPIC -I/export/home/dkumar/RLIB/include -L/export/home/dkumar/RLIB/lib conftest.c >&5 gcc: language Host not recognized gcc: language Host not recognized conftest.c: file not recognized: File format not recognized collect2: ld returned 1 exit status configure:3708: $? = 1 configure:3746: result: no configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "parallel-netcdf" | #define PACKAGE_TARNAME "parallel-netcdf" | #define PACKAGE_VERSION "1.6.1" | #define PACKAGE_STRING "parallel-netcdf 1.6.1" | #define PACKAGE_BUGREPORT "parallel-netcdf@mcs.anl.gov" | #define PACKAGE_URL "" | #define PNETCDF_VERSION_MAJOR 1 | #define PNETCDF_VERSION_MINOR 6 | #define PNETCDF_VERSION_SUB 1 | #define PNETCDF_VERSION_PRE | #define PNETCDF_VERSION "1.6.1" | #define PNETCDF_RELEASE_DATE "01 Jun 2015" | #define CONFIGURE_ARGS_CLEAN "CC=mpiicc CXX=mpiicpc FC=mpiifort --prefix=/export/home/dkumar/RLIB CPPFLAGS=-I/export/home/dkumar/RLIB/include LDFLAGS=-L/export/home/dkumar/RLIB/lib" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:3751: error: in `/home/dkumar/RLIB/parallel-netcdf-1.6.1': configure:3753: error: C compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## configure:3753: WARNING: cache variable ac_cv_env_FCFLAGS_value contains a newline ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpiicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-O3 -xHost -axSSE4.2 -fPIC' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=-I/export/home/dkumar/RLIB/include ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-O3 -xHost -axSSE4.2 -fPIC' ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpiicpc ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set=set ac_cv_env_FC_set=set ac_cv_env_FC_value=mpiifort ac_cv_env_FFLAGS_set=set ac_cv_env_FFLAGS_value='-O3 -xHost -axSSE4.2 -fPIC' ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=-L/export/home/dkumar/RLIB/lib ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPICC_set= ac_cv_env_MPICC_value= ac_cv_env_MPICXX_set= ac_cv_env_MPICXX_value= ac_cv_env_MPIF77_set= ac_cv_env_MPIF77_value= ac_cv_env_MPIF90_set= ac_cv_env_MPIF90_value= ac_cv_env_RM_set= ac_cv_env_RM_value= ac_cv_env_TEST_MPIRUN_set= ac_cv_env_TEST_MPIRUN_value= ac_cv_env_TEST_OUTDIR_set= ac_cv_env_TEST_OUTDIR_value= ac_cv_env_TEST_SEQRUN_set= ac_cv_env_TEST_SEQRUN_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_path_MPICC=/opt/intel/impi/4.1.0.024/intel64/bin/mpicc ac_cv_prog_ac_ct_CC=/opt/intel/impi/4.1.0.024/intel64/bin/mpicc ## ----------------- ## ## Output variables. ## ## ----------------- ## ' AR='' ARFLAGS='' AWK='' BUILDDIR='' CC='/opt/intel/impi/4.1.0.024/intel64/bin/mpicc' CC_MAKEDEPEND='' CFLAGS='-O3 -xHost -axSSE4.2 -fPIC' CONFIGURE_ARGS_CLEAN='CC=mpiicc CXX=mpiicpc FC=mpiifort --prefix=/export/home/dkumar/RLIB CPPFLAGS=-I/export/home/dkumar/RLIB/include LDFLAGS=-L/export/home/dkumar/RLIB/lib' CPP='' CPPFLAGS='-I/export/home/dkumar/RLIB/include' CXX='mpiicpc' CXXCPPFLAGS='' CXXFLAGS='-O3 -xHost -axSSE4.2 -fPIC' DEFS='' DVIPDF='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EXEEXT='' F77='' F90FLAGS='' F90LDFLAGS='' F90LIBS='' FC='mpiifort' FCFLAGS='-O3 -xHost -axSSE4.2 -fPIC FCFLAGS_F90='' FCFLAGS_F='' FCFLAGS_f90='' FCFLAGS_f='' FCLIBS='' FC_DEFINE='' FC_MODEXT='' FC_MODINC='' FC_MODOUT='' FFIXEDFORMFLAG='' FFLAGS='-O3 -xHost -axSSE4.2 -fPIC' FFREEFORMFLAG='' FLDFLAGS='' FLIBS='' FPP='' FPPFLAGS='' GREP='' INOUT='' INSTALL_DATA='' INSTALL_PROGRAM='' INSTALL_SCRIPT='' LATEX='' LCOV_LIB='' LDFLAGS='-L/export/home/dkumar/RLIB/lib' LIBOBJS='' LIBS='' LN_S='' LTLIBOBJS='' M4='' M4FLAGS='' MAKEWHATIS_CMD='' MPICC='/opt/intel/impi/4.1.0.024/intel64/bin/mpicc' MPICXX='' MPIF77='' MPIF90='' NM='' NMFLAGS='' OBJEXT='' PACKAGE_BUGREPORT='parallel-netcdf@mcs.anl.gov' PACKAGE_NAME='parallel-netcdf' PACKAGE_STRING='parallel-netcdf 1.6.1' PACKAGE_TARNAME='parallel-netcdf' PACKAGE_URL='' PACKAGE_VERSION='1.6.1' PATH_SEPARATOR=':' PNETCDF_INC='' PNETCDF_LIB='' PNETCDF_RELEASE_DATE2='2015-06-01' PNETCDF_RELEASE_DATE='01 Jun 2015' PNETCDF_VERSION='1.6.1' PNETCDF_VERSION_MAJOR='1' PNETCDF_VERSION_MINOR='6' PNETCDF_VERSION_PRE='' PNETCDF_VERSION_SUB='1' RANLIB='' RM='rm' SET_MAKE='' SHELL='/bin/sh' SIZEOF_MPI_OFFSET='' TEST_MPIRUN='' TEST_OUTDIR='' TEST_SEQRUN='' UPPER_CASE_MOD='' WHATIS='' ac_ct_CC='/opt/intel/impi/4.1.0.024/intel64/bin/mpicc' ac_ct_CXX='' ac_ct_F77='' ac_ct_FC='' ac_empty='' bindir='${exec_prefix}/bin' build='' build_alias='' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_subfiling='' exec_prefix='NONE' has_fortran='' has_latex='' has_mpicxx='' have_yacc_lex='' host='' host_alias='' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' is_bigendian='' large_file_test='' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/export/home/dkumar/RLIB' prog='' program_transform_name='s,x,x,' psdir='${docdir}' rm_cmd='' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "parallel-netcdf" #define PACKAGE_TARNAME "parallel-netcdf" #define PACKAGE_VERSION "1.6.1" #define PACKAGE_STRING "parallel-netcdf 1.6.1" #define PACKAGE_BUGREPORT "parallel-netcdf@mcs.anl.gov" #define PACKAGE_URL "" #define PNETCDF_VERSION_MAJOR 1 #define PNETCDF_VERSION_MINOR 6 #define PNETCDF_VERSION_SUB 1 #define PNETCDF_VERSION_PRE #define PNETCDF_VERSION "1.6.1" #define PNETCDF_RELEASE_DATE "01 Jun 2015" #define CONFIGURE_ARGS_CLEAN "CC=mpiicc CXX=mpiicpc FC=mpiifort --prefix=/export/home/dkumar/RLIB CPPFLAGS=-I/export/home/dkumar/RLIB/include LDFLAGS=-L/export/home/dkumar/RLIB/lib" configure: exit 77