With intel 2015.1.133 and gcc 5.1.0 in the path, error on make check with cxx interface

Nick Papior Andersen nickpapior at gmail.com
Mon Jun 1 01:00:46 CDT 2015


I am trying to compile and make check with these compilers:
intel 2015.1.13
and
gcc 5.1.0 in the path.

Compiling goes fine and everything seems to link correctly.
However make check errors out in the CXX test.

First I get this error message:
./nctst        ./testfile.nc
terminate called after throwing an instance of 'std::logic_error'
  what():  basic_string::_M_construct null not valid
[n-62-12-2:09803] *** Process received signal ***
[n-62-12-2:09803] Signal: Aborted (6)
[n-62-12-2:09803] Signal code:  (-6)
[n-62-12-2:09803] [ 0] /lib64/libpthread.so.0(+0xf710)[0x2aae4ac54710]
[n-62-12-2:09803] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x2aae4ae94625]
[n-62-12-2:09803] [ 2] /lib64/libc.so.6(abort+0x175)[0x2aae4ae95e05]
[n-62-12-2:09803] [ 3]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x15d)[0x2aae4a7428cd]
[n-62-12-2:09803] [ 4]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(+0x8c936)[0x2aae4a740936]
[n-62-12-2:09803] [ 5]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(+0x8c981)[0x2aae4a740981]
[n-62-12-2:09803] [ 6]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(+0x8cb98)[0x2aae4a740b98]
[n-62-12-2:09803] [ 7]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZSt19__throw_logic_errorPKc+0x3f)[0x2aae4a767faf]
[n-62-12-2:09803] [ 8] ./nctst[0x461b42]
[n-62-12-2:09803] [ 9] ./nctst[0x4644b6]
[n-62-12-2:09803] [10] ./nctst[0x40c313]
[n-62-12-2:09803] [11] ./nctst[0x409f60]
[n-62-12-2:09803] [12]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2aae4ae80d5d]
[n-62-12-2:09803] [13] ./nctst[0x409cb9]
[n-62-12-2:09803] *** End of error message ***


Secondly I change in file src/libcxx/ncmpiType.cpp:
function inq_type has 'return NULL' which cannot be done using returns of
string (unless it is a pointer, which it isn't)
So I change it to an empty string:
'return ""'
(I am not sure when this is reached, but the error message changes as can
be seen below, hence my suspicion is at that code segment)

Now I recompile and get this alternate error message:
./nctst        ./testfile.nc
[n-62-12-2:23419] *** Process received signal ***
[n-62-12-2:23419] Signal: Segmentation fault (11)
[n-62-12-2:23419] Signal code: Address not mapped (1)
[n-62-12-2:23419] Failing at address: 0xffffffffffffffe8
[n-62-12-2:23419] [ 0] /lib64/libpthread.so.0(+0xf710)[0x2ab6b02fa710]
[n-62-12-2:23419] [ 1]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZNSo6sentryC2ERSo+0x19)[0x2ab6afe61e79]
[n-62-12-2:23419] [ 2]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZSt16__ostream_insertIcSt11char_traitsIcEERSt13basic_ostreamIT_T0_ES6_PKS3_l+0x29)[0x2ab6afe62589]
[n-62-12-2:23419] [ 3]
/zdata/groups/common/nicpa/2015-test/generic/gcc/5.1.0/lib64/libstdc++.so.6(_ZStlsISt11char_traitsIcEERSt13basic_ostreamIcT_ES5_PKc+0x27)[0x2ab6afe629e7]
[n-62-12-2:23419] [ 4] ./nctst[0x40d4a5]
[n-62-12-2:23419] [ 5] ./nctst[0x409f60]
[n-62-12-2:23419] [ 6]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2ab6b0526d5d]
[n-62-12-2:23419] [ 7] ./nctst[0x409cb9]
[n-62-12-2:23419] *** End of error message ***
make[2]: *** [testing] Segmentation fault

There seem to be something fishy with the cxx interface?
I am no expert in cxx... :( So had troubles debugging further...

-- 
Kind regards Nick
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