From osmanjan.t at gmail.com Tue Aug 26 09:05:36 2014 From: osmanjan.t at gmail.com (Osman Tursun) Date: Tue, 26 Aug 2014 17:05:36 +0300 Subject: installation help Message-ID: Dear sir, firstly thank you for offering such a great resources. Everything is going fine , except some error. I hope you can help me, thank you. make install make -C src install make[1]: Entering directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src' make -w -C lib objs make[2]: Entering directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/lib' make[2]: Nothing to be done for `objs'. make[2]: Leaving directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/lib' make -w -C utils objs make[2]: Entering directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils' make -w -C ncmpigen make[3]: Entering directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils/ncmpigen' /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib -I./../../lib -I. -DHAVE_CONFIG_H main.c /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib -I./../../lib -I. -DHAVE_CONFIG_H load.c /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib -I./../../lib -I. -DHAVE_CONFIG_H escapes.c /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib -I./../../lib -I. -DHAVE_CONFIG_H getfill.c /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib -I./../../lib -I. -DHAVE_CONFIG_H init.c /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib -I./../../lib -I. -DHAVE_CONFIG_H genlib.c /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib -I./../../lib -I. -DHAVE_CONFIG_H ncmpigentab.c /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -g -O2 -o ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o -L../../lib -lpnetcdf ../../lib/libpnetcdf.a(subfile.o): In function `ncmpii_subfile_getput_vars': /home1/e1893122/workspace/parallel-netcdf-1.5.0/src/lib/subfile.c:762: undefined reference to `MPI_Type_get_extent' collect2: ld returned 1 exit status make[3]: *** [ncmpigen] Error 1 make[3]: Leaving directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils/ncmpigen' make[2]: *** [ncmpigen] Error 2 make[2]: Leaving directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils' make[1]: *** [utils] Error 2 make[1]: Leaving directory `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src' make: *** [install-src] Error 2 -- Best wishes Osman Tursun -------------- next part -------------- An HTML attachment was scrubbed... URL: From osmanjan.t at gmail.com Tue Aug 26 09:19:45 2014 From: osmanjan.t at gmail.com (Osman Tursun) Date: Tue, 26 Aug 2014 17:19:45 +0300 Subject: installation help In-Reply-To: References: Message-ID: if you need the detailed output result.. you can see the attachment.. On Tue, Aug 26, 2014 at 5:05 PM, Osman Tursun wrote: > Dear sir, firstly thank you for offering such a great resources. > Everything is going fine , except some error. I hope you can help me, thank > you. > > > > make install > make -C src install > make[1]: Entering directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src' > make -w -C lib objs > make[2]: Entering directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/lib' > make[2]: Nothing to be done for `objs'. > make[2]: Leaving directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/lib' > make -w -C utils objs > make[2]: Entering directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils' > make -w -C ncmpigen > make[3]: Entering directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils/ncmpigen' > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib > -I./../../lib -I. -DHAVE_CONFIG_H main.c > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib > -I./../../lib -I. -DHAVE_CONFIG_H load.c > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib > -I./../../lib -I. -DHAVE_CONFIG_H escapes.c > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib > -I./../../lib -I. -DHAVE_CONFIG_H getfill.c > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib > -I./../../lib -I. -DHAVE_CONFIG_H init.c > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib > -I./../../lib -I. -DHAVE_CONFIG_H genlib.c > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -c -g -O2 -I. -I../../lib > -I./../../lib -I. -DHAVE_CONFIG_H ncmpigentab.c > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -g -O2 -o ncmpigen main.o load.o > escapes.o getfill.o init.o genlib.o ncmpigentab.o -L../../lib -lpnetcdf > ../../lib/libpnetcdf.a(subfile.o): In function > `ncmpii_subfile_getput_vars': > /home1/e1893122/workspace/parallel-netcdf-1.5.0/src/lib/subfile.c:762: > undefined reference to `MPI_Type_get_extent' > collect2: ld returned 1 exit status > make[3]: *** [ncmpigen] Error 1 > make[3]: Leaving directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils/ncmpigen' > make[2]: *** [ncmpigen] Error 2 > make[2]: Leaving directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils' > make[1]: *** [utils] Error 2 > make[1]: Leaving directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src' > make: *** [install-src] Error 2 > > > -- > Best wishes > Osman Tursun > -- Best wishes Osman Tursun -------------- next part -------------- An HTML attachment was scrubbed... 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Name: make_output Type: application/octet-stream Size: 5638 bytes Desc: not available URL: From robl at mcs.anl.gov Tue Aug 26 09:27:38 2014 From: robl at mcs.anl.gov (Rob Latham) Date: Tue, 26 Aug 2014 09:27:38 -0500 Subject: installation help In-Reply-To: References: Message-ID: <53FC995A.6070005@mcs.anl.gov> On 08/26/2014 09:05 AM, Osman Tursun wrote: > /usr/mpi/gcc/mvapich-1.1.0/bin/mpicc -g -O2 -o ncmpigen main.o load.o > escapes.o getfill.o init.o genlib.o ncmpigentab.o -L../../lib -lpnetcdf > ../../lib/libpnetcdf.a(subfile.o): In function `ncmpii_subfile_getput_vars': > /home1/e1893122/workspace/parallel-netcdf-1.5.0/src/lib/subfile.c:762: > undefined reference to `MPI_Type_get_extent' mvapich-1.1.0 is quite old: one cannot even download it from the OSU page any longer. pnetcdf tries to support MPI-1 implementations, and I guess we missed a spot, but you will be much better served by a newer MVAPICH. ==rob > collect2: ld returned 1 exit status > make[3]: *** [ncmpigen] Error 1 > make[3]: Leaving directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils/ncmpigen' > make[2]: *** [ncmpigen] Error 2 > make[2]: Leaving directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src/utils' > make[1]: *** [utils] Error 2 > make[1]: Leaving directory > `/home1/e1893122/workspace/parallel-netcdf-1.5.0/src' > make: *** [install-src] Error 2 > > > -- > Best wishes > Osman Tursun -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA