Building errors relating to undefined reference of 'nfmpi_*'

[Wei-keng Liao]

Try

./configure --prefix=/home/wangbin/tools/netcdf/pnetcdf/1.3.1 \
	--with-mpi=/apps/intel/impi/4.0.2.003/intel64/ \
	MPIF77=/apps/intel/impi/4.0.2.003/intel64/bin/mpiifort \ 
	MPIF90=/apps/intel/impi/4.0.2.003/intel64/bin/mpiifort \
        FC=ifort F90=ifort


Wei-keng

On May 30, 2013, at 9:29 PM, Li Dong wrote:

> Dear Wei-keng,
> 
> It's great! Where can I find the solution?
> 
> Li
> 
> -----------------------------------------
> Dr. Li Dong (董理)
> LASG, Institute of Atmospheric Physics
> Chinese Academy of Sciences
> P.O. Box 9804
> Beijing 100029, China
> Phone: 8610-8299 5143
> 
> 在 2013-5-31，上午10:25，Wei-keng Liao <wkliao at ece.northwestern.edu> 写道：
> 
>> Hi, Li,
>> 
>> Rob has pointed out the problem and suggested you a solution.
>> Please give it a try and let us know if that works.
>> 
>> Wei-keng
>> 
>> On May 30, 2013, at 8:08 PM, Li Dong wrote:
>> 
>>> Dear Wei-keng,
>>> 
>>> Thank you for helping! Here is the output in the attachment.
>>> 
>>> Li
>>> 
>>> <make.output>
>>> 
>>> -----------------------------------------
>>> Dr. Li Dong (董理)
>>> LASG, Institute of Atmospheric Physics
>>> Chinese Academy of Sciences
>>> P.O. Box 9804
>>> Beijing 100029, China
>>> Phone: 8610-8299 5143
>>> 
>>> 在 2013-5-30，下午10:43，Wei-keng Liao <wkliao at ece.northwestern.edu> 写道：
>>> 
>>>> Hi, Li
>>>> 
>>>> It looks like the fortran part of PnetCDF failed to build.
>>>> Could you send us the standard output from the screen when you run "make" command?
>>>> You can do the following command and send us the file "make.output".
>>>> 
>>>> make -s clean; make >& make.output
>>>> 
>>>> 
>>>> Wei-keng
>>>> 
>>>> On May 30, 2013, at 2:48 AM, Li Dong wrote:
>>>> 
>>>>> Dear PnetCDF supporters,
>>>>> 
>>>>> When I build parallel-netcdf on our server, I invoked 'make tests' after 'make' and encountered the following errors:
>>>>> 
>>>>> /apps/intel/impi/4.0.2.003/intel64/bin/mpiifort -o bigrecords bigrecords.o -L../../src/lib  -lpnetcdf
>>>>> bigrecords.o: In function `MAIN__':
>>>>> bigrecords.F:(.text+0xb0): undefined reference to `nfmpi_create_'
>>>>> bigrecords.F:(.text+0xe6): undefined reference to `nfmpi_def_dim_'
>>>>> bigrecords.F:(.text+0x12b): undefined reference to `nfmpi_def_dim_'
>>>>> bigrecords.F:(.text+0x170): undefined reference to `nfmpi_def_dim_'
>>>>> bigrecords.F:(.text+0x1c2): undefined reference to `nfmpi_def_var_'
>>>>> bigrecords.F:(.text+0x214): undefined reference to `nfmpi_def_var_'
>>>>> bigrecords.F:(.text+0x282): undefined reference to `nfmpi_def_var_'
>>>>> bigrecords.F:(.text+0x2d3): undefined reference to `nfmpi_put_att_text_'
>>>>> bigrecords.F:(.text+0x324): undefined reference to `nfmpi_put_att_text_'
>>>>> bigrecords.F:(.text+0x375): undefined reference to `nfmpi_put_att_text_'
>>>>> bigrecords.F:(.text+0x3c6): undefined reference to `nfmpi_put_att_text_'
>>>>> bigrecords.F:(.text+0x417): undefined reference to `nfmpi_put_att_text_'
>>>>> bigrecords.o:bigrecords.F:(.text+0x468): more undefined references to `nfmpi_put_att_text_' follow
>>>>> bigrecords.o: In function `MAIN__':
>>>>> bigrecords.F:(.text+0x486): undefined reference to `nfmpi_enddef_'
>>>>> bigrecords.F:(.text+0x4d2): undefined reference to `nfmpi_put_vara_real_all_'
>>>>> bigrecords.F:(.text+0x557): undefined reference to `nfmpi_put_vara_double_all_'
>>>>> bigrecords.F:(.text+0x57e): undefined reference to `nfmpi_close_'
>>>>> bigrecords.F:(.text+0x5c2): undefined reference to `nfmpi_open_'
>>>>> bigrecords.F:(.text+0x5f2): undefined reference to `nfmpi_inq_varid_'
>>>>> bigrecords.F:(.text+0x63e): undefined reference to `nfmpi_get_vara_double_all_'
>>>>> bigrecords.F:(.text+0x65c): undefined reference to `nfmpi_close_'
>>>>> bigrecords.o: In function `writerecs_':
>>>>> bigrecords.F:(.text+0x1165): undefined reference to `nfmpi_put_vara_double_all_'
>>>>> ../../src/lib/libpnetcdf.a(strerrorf.o): In function `nfmpi_strerror_':
>>>>> strerrorf.f:(.text+0x15): undefined reference to `nfmpi_xstrerror_'
>>>>> make[2]: *** [bigrecords] Error 1
>>>>> 
>>>>> The config.log file is in the attach and the results of 'uname -a' are:
>>>>> 
>>>>> Linux ln1 2.6.18-194.17.1.0.1.el5_lustre.1.8.5 #1 SMP Wed Aug 3 18:09:09 CST 2011 x86_64 x86_64 x86_64 GNU/Linux
>>>>> 
>>>>> How to solve this problem? Thanks in advance!
>>>>> 
>>>>> Best regards,
>>>>> 
>>>>> Li
>>>>> 
>>>>> <config.log>
>>>>> 
>>>>> -----------------------------------------
>>>>> Dr. Li Dong (董理)
>>>>> LASG, Institute of Atmospheric Physics
>>>>> Chinese Academy of Sciences
>>>>> P.O. Box 9804
>>>>> Beijing 100029, China
>>>>> Phone: 8610-8299 5143
>>>>> 
>>>> 
>>> 
>> 
>