makenek - automatic build tool for Nek5000 generating makefile ... build 3rd-party software ... icc -I./src -DMPI -DUSEMPIIO -DUNDERSCORE -DUSE_USR_EXIT -DPREFIX=gslib_ -DFPREFIX=fgslib_ -DGLOBAL_LONG_LONG -c src/gs.c -o src/gs.o icc -I./src -DMPI -DUSEMPIIO -DUNDERSCORE -DUSE_USR_EXIT -DPREFIX=gslib_ -DFPREFIX=fgslib_ -DGLOBAL_LONG_LONG -c src/sarray_transfer.c -o src/sarray_transfer.o icc -I./src -DMPI -DUSEMPIIO -DUNDERSCORE -DUSE_USR_EXIT -DPREFIX=gslib_ -DFPREFIX=fgslib_ -DGLOBAL_LONG_LONG -c src/fail.c -o src/fail.o icc -I./src -DMPI -DUSEMPIIO -DUNDERSCORE -DUSE_USR_EXIT -DPREFIX=gslib_ -DFPREFIX=fgslib_ -DGLOBAL_LONG_LONG -c src/crystal.c -o src/crystal.o src/comm.h(65): catastrophic error: cannot open source file "mpi.h" #include ^ compilation aborted for src/crystal.c (code 4) src/comm.h(65): catastrophic error: cannot open source file "mpi.h" #include ^ make: *** [src/crystal.o] Error 4 make: *** Waiting for unfinished jobs.... compilation aborted for src/sarray_transfer.c (code 4) make: *** [src/sarray_transfer.o] Error 4 src/comm.h(65): catastrophic error: cannot open source file "mpi.h" #include ^ compilation aborted for src/fail.c (code 4) make: *** [src/fail.o] Error 4 src/comm.h(65): catastrophic error: cannot open source file "mpi.h" #include ^ compilation aborted for src/gs.c (code 4) make: *** [src/gs.o] Error 4 mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/drive.f -o obj/drive.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/drive1.f -o obj/drive1.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/drive2.f -o obj/drive2.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/plan5.f -o obj/plan5.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/plan4.f -o obj/plan4.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/bdry.f -o obj/bdry.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/coef.f -o obj/coef.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/conduct.f -o obj/conduct.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/connect1.f -o obj/connect1.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/connect2.f -o obj/connect2.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/dssum.f -o obj/dssum.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/edgec.f -o obj/edgec.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/eigsolv.f -o obj/eigsolv.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/gauss.f -o obj/gauss.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/genxyz.f -o obj/genxyz.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier1.f -o obj/navier1.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/makeq.f -o obj/makeq.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier0.f -o obj/navier0.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier2.f -o obj/navier2.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier3.f -o obj/navier3.o ../../../Nek5000/core/navier1.f(3253): warning #6371: A jump into a block from outside the block may have occurred. [101] if (.not. ifdeal(ifield)) goto 101 -------------------------------------^ mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier4.f -o obj/navier4.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/prepost.f -o obj/prepost.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/speclib.f -o obj/speclib.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/map2.f -o obj/map2.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/mvmesh.f -o obj/mvmesh.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/ic.f -o obj/ic.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/gfldr.f -o obj/gfldr.o ../../../Nek5000/core/gfldr.f(149): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. if(nio.eq.0) write(6,'(A,1(1g8.2),A)') -----------------------------------^ mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/ssolv.f -o obj/ssolv.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/planx.f -o obj/planx.o mpif77 -c -O3 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/math.f -o obj/math.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/mxm_wrapper.f -o obj/mxm_wrapper.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/hmholtz.f -o obj/hmholtz.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/gfdm_par.f -o obj/gfdm_par.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/gfdm_op.f -o obj/gfdm_op.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/gfdm_solve.f -o obj/gfdm_solve.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/subs1.f -o obj/subs1.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/subs2.f -o obj/subs2.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/genbox.f -o obj/genbox.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/gmres.f -o obj/gmres.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/hsmg.f -o obj/hsmg.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/convect.f -o obj/convect.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/induct.f -o obj/induct.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/perturb.f -o obj/perturb.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier5.f -o obj/navier5.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier6.f -o obj/navier6.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier7.f -o obj/navier7.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/navier8.f -o obj/navier8.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/fast3d.f -o obj/fast3d.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/fasts.f -o obj/fasts.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/calcz.f -o obj/calcz.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/byte.c -o obj/byte.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/chelpers.c -o obj/chelpers.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/byte_mpi.f -o obj/byte_mpi.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/postpro.f -o obj/postpro.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/intp_usr.f -o obj/intp_usr.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/cvode_driver.f -o obj/cvode_driver.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/nek_comm.c -o obj/nek_comm.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/vprops.f -o obj/vprops.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/makeq_aux.f -o obj/makeq_aux.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/papi.f -o obj/papi.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/3rd_party/nek_in_situ.f -o obj/nek_in_situ.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/reader_rea.f -o obj/reader_rea.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/reader_par.f -o obj/reader_par.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/reader_re2.f -o obj/reader_re2.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/3rd_party/finiparser.c -o obj/finiparser.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/3rd_party/iniparser.c -o obj/iniparser.o ../../../Nek5000/core/reader_re2.f(61): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. if(nio.eq.0) write(6,'(A,1(1g8.2),A,/)') -----------------------------------^ mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/3rd_party/dictionary.c -o obj/dictionary.o ifort -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/hpf.f -o obj/hpf.o mpif77 -c -O3 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/mxm_std.f -o obj/mxm_std.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/comm_mpi.f -o obj/comm_mpi.o mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ ../../../Nek5000/core/singlmesh.f -o obj/singlmesh.o ../../../Nek5000/core/comm_mpi.f(89): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. WRITE(6,'(A,1pE8.2)') ' Timer accuracy : ',edif ------------------------^ mpif77 -c -O0 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/3rd_party/blas.f -o obj/blas.o mpif77 -c -O0 -DMPI -DUNDERSCORE -DTIMER ../../../Nek5000/core/3rd_party/dsygv.f -o obj/dsygv.o `g30box.usr' -> `g30box.f' mpif77 -c -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ /home/msaikat6/Nek5000/examples/g30test/g30box.f -o obj/g30box.o mpif77 -O2 -r8 -fpconstant -fpp -DMPI -DUNDERSCORE -DTIMER -I/home/msaikat6/Nek5000/examples/g30test -I../../../Nek5000/core -I./ -o nek5000 obj/g30box.o obj/drive.o obj/drive1.o obj/drive2.o obj/plan5.o obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o obj/mvmesh.o obj/ic.o obj/gfldr.o obj/ssolv.o obj/planx.o obj/math.o obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o obj/hsmg.o obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o obj/navier6.o obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o obj/byte.o obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/intp_usr.o obj/cvode_driver.o obj/nek_comm.o obj/vprops.o obj/makeq_aux.o obj/papi.o obj/nek_in_situ.o obj/reader_rea.o obj/reader_par.o obj/reader_re2.o obj/finiparser.o obj/iniparser.o obj/dictionary.o obj/hpf.o obj/mxm_std.o obj/comm_mpi.o obj/singlmesh.o obj/blas.o obj/dsygv.o -L../../../Nek5000/3rd_party/gslib/lib -lgs ld: cannot find -lgs make: *** [nek5000] Error 1