<div dir="ltr">Hi Ron,<div><br></div><div>Yes, that helped! I had a closer look and noted errors in the compilation and it was related to the MPI compilers.</div><div><br></div><div>Once I specified the right compilers, I am able to run the examples. Thanks for resolving this.</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Aug 2, 2016 at 3:01 PM, <span dir="ltr"><<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Are there any errors prior to the message "Successfully compiled Nek5000"? Equivalently, are there any errors in compiler.out?<div><br></div><div>Best,</div><div>Ron</div><div><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Aug 2, 2016 at 1:58 PM, <span dir="ltr"><<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hello,<div><br><div>Thank you for the reply. I had tried specifying the VERBOSE_TESTS as mentioned earlier but I don't see any new command line output.</div></div><div><br></div><div>I am able to see that the VERBOSE_TESTS setting is picked up, i.e.</div><div><br></div><div><div><font face="monospace, monospace">Getting setup options...</font></div><div><font face="monospace, monospace"> Using F77="gfortran"</font></div><div><font face="monospace, monospace"> Using CC="gcc"</font></div><div><font face="monospace, monospace"> Using IFMPI="false"</font></div><div><font face="monospace, monospace" color="#0000ff"> Using VERBOSE_TESTS="true"</font></div><div><font face="monospace, monospace"> Using SOURCE_ROOT at ~/github/Nek5000</font></div><div><font face="monospace, monospace"> Using EXAMPLES_ROOT at ~/github/NekExamples</font></div><div><font face="monospace, monospace"> Using TOOLS_ROOT at ~/github/Nek5000/tools</font></div><div><font face="monospace, monospace"> Using TOOLS_BIN at ~/github/Nek5000/bin</font></div></div><div><br></div><div>But I still get the same error message and output as before, i.e. that the .sch file is not found and so the running process just stops. Any thoughts?</div><div><br></div><div><br></div><div><br></div></div><div class="gmail_extra"><div><div><br><div class="gmail_quote">On Tue, Aug 2, 2016 at 11:59 AM, <span dir="ltr"><<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Good morning!<div><br></div><div><span><blockquote style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex" class="gmail_quote">1) It looks like some Nek5000 files keep getting rebuilt each time I execute the above command, even if they have been built before.</blockquote><div><br></div></span><div>Yes, this is intentional. NekTests.py is used primarily for software testing. We want to ensure the tests are reproducible, so Nek5000 is built from scratch every single time. </div><div><br></div><div>Regarding (2), could you set VERBOSE_TESTS="true" in your environment and let us know what errors you see?</div><div><br></div><div>Sorry that VERBOSE_TESTS is currently undocumented; I will document it in the README as soon as possible.</div><div><br></div><div>Best wishes,</div><div>Ron Rahaman</div></div><div><div data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div><span style="font-size:12.8000001907349px"><br></span></div><div><span style="font-size:12.8000001907349px">Argonne National Laboratory, Math and Computer Science Division</span><br></div><div>University of Chicago, Department of Computer Science</div></div></div></div></div></div></div></div></div>
<div class="gmail_extra"><br><div class="gmail_quote"><div><div>On Tue, Aug 2, 2016 at 10:06 AM, <span dir="ltr"><<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div><div dir="ltr">Hello,<div><br></div><div>I am trying to run a standalone Nek5000 Example. I have Nek5000 installed and I am following the Examples instructions from <a href="https://github.com/Nek5000/NekExamples" target="_blank">https://github.com/Nek5000/NekExamples</a></div><div><br></div><div>When I try to run any particular example, using:</div><div><br></div><div><font face="monospace, monospace">python -m 'unittest' NekTests.ConjHt</font></div><div><br></div><div>I face two issues:</div><div><br></div><div>1) It looks like some Nek5000 files keep getting rebuilt each time I execute the above command, even if they have been built before.</div><div><br></div><div>2) I always get an error:</div><div><br></div><div><div><font face="monospace, monospace">Successfully compiled nek5000!</font></div><div><font face="monospace, monospace">Running nek5000...</font></div><div><font face="monospace, monospace"> Using command "~/github/NekExamples/conj_ht/nek5000"</font></div><div><font face="monospace, monospace"> Using working directory "~/github/NekExamples/conj_ht"</font></div><div><font face="monospace, monospace"> Using .rea file "conj_ht"</font></div><div><font face="monospace, monospace"> Could not remove ~/github/NekExamples/conj_ht/conj_ht.sch: [Errno 2] No such file or directory: '~/github/NekExamples/conj_ht/conj_ht.sch'</font></div><div><font face="monospace, monospace">Could not successfully run nek5000! Caught error: [Errno 2] No such file or directory</font></div><div><br></div><div>I tried looking through the Makefiles and the Python script but cannot see where the sch file is specified. Also, I tried creating a dummy sch file so that the build can find and remove it, but that didn't work either.</div><div><br></div><div>Please advise on how I can resolve the errors.</div><div><br></div><div><div><br></div>Thanks,<br><div><div dir="ltr">K.N.Ramachandran<br><div>Ph: <a href="tel:814-441-4279" value="+18144414279" target="_blank">814-441-4279</a></div></div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr">K.N.Ramachandran<br><div>Ph: 814-441-4279</div></div></div>
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