<div dir="ltr">Hi Paul,<div><br></div><div>It is looks like that the n2to3 not generate the 3D mesh with periodic boundary conditions correctly by rotating. First I tried to generate a 3D mesh, then after applied genmap it appears the similar error. </div><div><br></div><div>Following the discussions some years ago, it seems I need to update the genmap.f, Have you update the new version, or Would you like to post the genmap.f again?</div><div>thanks!</div><div><br></div><div>Wei</div><div><br></div><div><p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">n2to3 </p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0);min-height:22px"><br></p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> This is the code that establishes proper</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> element connectivities, as of Oct., 2006.</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0);min-height:22px"><br></p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> Input old (source) file name:</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">box</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> Input new (output) file name:</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">boxss</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> For ASCII output only: 0; For .rea/.re2: 1</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">0</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> input number of levels: (1, 2, 3,...; < 0 for circular sweep.):</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">-20</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> input z min:</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">0</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> input z max:</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">90</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> input gain (0=custom,1=uniform,other=geometric spacing):</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">1</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> This is for CEM: yes or no:</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">no</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> Enter Z(5) FLUID boundary condition (P,v,O,ect):</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">P</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> this is FLUID cbz: P P <--- </p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> F F 0 1 ifheat,ifmhd</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0);min-height:22px"><br></p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 360 elements written to boxss.rea</p></div><div><br></div><div><br></div><div><p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">genmap </p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">Input (.rea) file name:</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">boxss</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">Input mesh tolerance (default 0.2):</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">NOTE: smaller is better, but generous is more forgiving for bad meshes.</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">0.1</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> reading .rea file data ...</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> start locglob_lexico: 8 360 2880 0.10000000000000001 </p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 1 1 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 2 59 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 3 84 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 1 588 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 2 588 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 3 588 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 1 588 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 2 588 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> locglob: 3 588 2880</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> done locglob_lexico: 588 588 2880 8</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> start periodic vtx: 360 588</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 1 4 4 Matrix: x0 </p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 1 x0 1.2084E-06 1.2084E-06 1.6729E-06 1.6729E-06</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 2 x0 -1.2362E-03 -1.2362E-03 1.2363E-03 1.2363E-03</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 3 x0 -0.0000E+00 -0.0000E+00 -0.0000E+00 -0.0000E+00</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 4 x0 -2.6465E-03 2.6465E-03 2.6465E-03 -2.6465E-03</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 343 4 4 Matrix: x1 </p></div><div><p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)">1 x1 1.2084E-06 1.6729E-06 1.6729E-06 1.2084E-06</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 2 x1 5.4038E-11 -5.4038E-11 -5.4038E-11 5.4038E-11</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 3 x1 1.2362E-03 -1.2363E-03 -1.2363E-03 1.2362E-03</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 4 x1 -2.6465E-03 -2.6465E-03 2.6465E-03 2.6465E-03</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 1 4 4 Matrix: z0 </p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 1 z0 1.2084E-06 1.2084E-06 1.6729E-06 1.6729E-06</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 2 z0 1.4000E-02 1.4000E-02 1.6473E-02 1.6473E-02</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 3 z0 -0.0000E+00 -0.0000E+00 -0.0000E+00 -0.0000E+00</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 4 z0 -1.1000E-01 -1.0471E-01 -1.0471E-01 -1.1000E-01</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 343 4 4 Matrix: z1 </p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 1 z1 1.2084E-06 1.6729E-06 1.6729E-06 1.2084E-06</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 2 z1 -6.1196E-10 -7.2004E-10 -7.2004E-10 -6.1196E-10</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 3 z1 -1.4000E-02 -1.6473E-02 -1.6473E-02 -1.4000E-02</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 4 z1 -1.1000E-01 -1.1000E-01 -1.0471E-01 -1.0471E-01</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 1 5 3 1.00000000E-03 1.10000000E-01 abort: FACE MATCH FAIL</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 343 6 5 1.10000000E-04 3.49664311E-03 abort: FACE MATCH FAIL</p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0);min-height:22px"><br></p>
<p style="margin:0px;font-size:20px;line-height:normal;font-family:'Andale Mono';color:rgb(41,249,20);background-color:rgb(0,0,0)"> 0 quit</p></div><div><br></div><div><br></div><div><br></div><div>====================================================<br><div class="gmail_extra"><div class="gmail_signature"><div dir="ltr"><div><pre style="white-space:pre-wrap;color:rgb(0,0,0)">Hi,
Yes, got it now. I don't know why it wasn't working either. I use the same thing to compress files, either way it's good now. Thanks Paul.
- Michael
----- Original Message -----
From: <a href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users">nek5000-users at lists.mcs.anl.gov</a>
To: <a href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users">nek5000-users at lists.mcs.anl.gov</a>
Sent: Tuesday, June 22, 2010 10:40:57 AM GMT -06:00 Guadalajara / Mexico City / Monterrey
Subject: Re: [Nek5000-users] Periodic BC & Genmap issue
Hi Michael,
not sure why gunzip didn't work - it worked here... but I've
put the unzipped version in:
<a href="http://www.mcs.anl.gov/~fischer/genmap.f">www.mcs.anl.gov/~fischer/genmap.f</a>
Let me know if that works for you.
Cheers,
Paul
</pre></div><div><br></div></div></div>
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