<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Dear Paul, <br>
<br>
I use the ' nekbmpi ' scripts from the tools/script and nothing
else.<br>
<br>
I guess the some where the PATH variable to working directory is
getting changed. It's weird the same code works properly on my
ubuntu and not my Mac. <br>
<br>
Thank you,<br>
Kamal <br>
<br>
<br>
<div class="moz-cite-prefix">On 14/04/2014 15:49,
<a class="moz-txt-link-abbreviated" href="mailto:nek5000-users@lists.mcs.anl.gov">nek5000-users@lists.mcs.anl.gov</a> wrote:<br>
</div>
<blockquote
cite="mid:mailman.5486.1397483368.3880.nek5000-users@lists.mcs.anl.gov"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
<style type="text/css" id="owaParaStyle"></style>
<div style="direction: ltr;font-family: Tahoma;color:
#000000;font-size: 10pt;">
<div><br>
</div>
<div>Hi Kamal,</div>
<div><br>
</div>
If you use one of the nek scripts in tools/scripts (e.g., nek,
nekb, nekmpi, nekbmpi, etc.), the
<div>path issues should be resolved for you. That's the normal
approach. I believe some of this </div>
<div>is outlined in the "quick start" section of the manual.</div>
<div><br>
</div>
<div>Best, Paul</div>
<div><br>
</div>
<div>
<div style="font-family: Times New Roman; color: #000000;
font-size: 16px">
<hr tabindex="-1">
<div id="divRpF413831" style="direction: ltr;"><font
color="#000000" face="Tahoma" size="2"><b>From:</b>
<a class="moz-txt-link-abbreviated" href="mailto:nek5000-users-bounces@lists.mcs.anl.gov">nek5000-users-bounces@lists.mcs.anl.gov</a>
[<a class="moz-txt-link-abbreviated" href="mailto:nek5000-users-bounces@lists.mcs.anl.gov">nek5000-users-bounces@lists.mcs.anl.gov</a>] on behalf of
<a class="moz-txt-link-abbreviated" href="mailto:nek5000-users@lists.mcs.anl.gov">nek5000-users@lists.mcs.anl.gov</a>
[<a class="moz-txt-link-abbreviated" href="mailto:nek5000-users@lists.mcs.anl.gov">nek5000-users@lists.mcs.anl.gov</a>]<br>
<b>Sent:</b> Sunday, April 13, 2014 6:55 AM<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:nek5000-users@lists.mcs.anl.gov">nek5000-users@lists.mcs.anl.gov</a><br>
<b>Subject:</b> Re: [Nek5000-users] Restart option
failed<br>
</font><br>
</div>
<div>Hello Neks, <br>
<br>
I figured out where the error of restart fail comes from.
Its because the code is not looking in to the working
directory for the file.<br>
<br>
<br>
In " byte.c " file I made a small change to the byte_read
() function, instead of having the variable " name " I
changed it to the path of my restart file
<br>
----------------------------------------------------------------------------------------------------<br>
if (!fp)<br>
{<br>
if
(!(fp=fopen("/home/2014012/jpeixi01/neksamples/eddy/eddy_uv0.f00012","rb")))<br>
{<br>
printf("%s\n",name);<br>
printf("byte_read() :: fopen failure2!\n"); <br>
*ierr=1;<br>
return;<br>
}<br>
flag=READ;<br>
}<br>
-----------------------------------------------------------------------------------------------------<br>
<br>
this worked for me. <br>
<br>
Now I would like to know why is the code not looking into
the working directory, If so where do I change it to
overcome this problem so that I don't have to change the
path every single time.
<br>
<br>
<br>
Thanks a lot,<br>
BOW <br>
<br>
<br>
<br>
<div class="moz-cite-prefix">On 11/04/2014 17:43, <a
moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">
nek5000-users@lists.mcs.anl.gov</a> wrote:<br>
</div>
<blockquote type="cite">
<p dir="ltr">Hi,</p>
<p dir="ltr">Is your restart file a 0.f00000 format? <br>
If the param (67) is not set in the .usr file, the
default is set to 0 . f00000.
<br>
</p>
<p dir="ltr">Katie</p>
<p dir="ltr">Katie</p>
<div class="gmail_quote">On Apr 11, 2014 9:56 AM, <<a
moz-do-not-send="true"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">nek5000-users@lists.mcs.anl.gov</a>>
wrote:<br type="attribution">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex; border-left:1px #ccc solid; padding-left:1ex">
<div bgcolor="#FFFFFF">Hi Paul, <br>
<br>
I don't change parameters through the .usr file.
<br>
Thank you <br>
<br>
Kamal<br>
<br>
<div>On 11/04/2014 16:52, <a
moz-do-not-send="true"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">
nek5000-users@lists.mcs.anl.gov</a> wrote:<br>
</div>
<blockquote type="cite">
<div style="direction:ltr; font-size:10pt;
font-family:Tahoma"><br>
Hi Kamal,<br>
<br>
Make certain tey aren't reset in your .usr
file.<br>
<br>
Best, Paul<br>
<br>
<div style="font-size:16px; font-family:Times
New Roman">
<hr>
<div style="direction:ltr"><font
color="#000000" face="Tahoma"><b>From:</b>
<a moz-do-not-send="true"
href="mailto:nek5000-users-bounces@lists.mcs.anl.gov"
target="_blank">
nek5000-users-bounces@lists.mcs.anl.gov</a> [<a moz-do-not-send="true"
href="mailto:nek5000-users-bounces@lists.mcs.anl.gov"
target="_blank">nek5000-users-bounces@lists.mcs.anl.gov</a>]
on behalf of
<a moz-do-not-send="true"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">nek5000-users@lists.mcs.anl.gov</a>
[<a moz-do-not-send="true"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">nek5000-users@lists.mcs.anl.gov</a>]<br>
<b>Sent:</b> Thursday, April 10, 2014
9:09 AM<br>
<b>To:</b> <a moz-do-not-send="true"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">nek5000-users@lists.mcs.anl.gov</a><br>
<b>Subject:</b> Re: [Nek5000-users]
Restart option failed<br>
</font><br>
</div>
<div><br>
Hi JC, <br>
<br>
Thanks for the reply<br>
<br>
The parameters are positive <br>
0.00000 p064 =1 --> perturbation
restart<br>
1.00000 p065 #iofiles (eg, 0 or
64); <0 --> sep. dirs<br>
6.00000 p066 output : <0=ascii,
else binary<br>
6.00000 p067 restart: <0=ascii,
else binary<br>
<br>
Regards,<br>
Kamal <br>
<br>
<br>
<div>On 11/04/2014 14:18, <a
moz-do-not-send="true"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">
nek5000-users@lists.mcs.anl.gov</a>
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div>Hi Kamal,<br>
<br>
Check out the parameters 64 or 65 in
your .rea file. It is very likely
that it is set to -4 instead of a
positive number.<br>
<br>
</div>
Cheers,<br>
JC<br>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">2014-04-10
14:13 GMT+02:00 <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:nek5000-users@lists.mcs.anl.gov"
target="_blank">nek5000-users@lists.mcs.anl.gov</a>></span>:<br>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;
border-left:1px #ccc solid;
padding-left:1ex">
Hello Neks,<br>
<br>
I tried to restart my simulation
from a previous output *.f file
but it failed<br>
<br>
I set the restart option in *.rea
to 1 and added the file name.<br>
<br>
Could some please tell me what
might be the possible cause for
this ?<br>
<br>
***********************************************************************<br>
nekuic (1) for ifld 1<br>
Reading checkpoint data<br>
0 0 OPEN:
extens0.f00250<br>
extens0.f00250<br>
byte_read() :: fopen failure2!<br>
ERROR: Error reading restart
header in mfi_prepare ierr= 1<br>
<br>
call exitt: dying ...<br>
<br>
************************************************************************<br>
<br>
Thanks in advance.<br>
<br>
Kamal<br>
<br>
_______________________________________________<br>
Nek5000-users mailing list<br>
<a moz-do-not-send="true"
href="mailto:Nek5000-users@lists.mcs.anl.gov"
target="_blank">Nek5000-users@lists.mcs.anl.gov</a><br>
<a moz-do-not-send="true"
href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users"
target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users</a><br>
</blockquote>
</div>
<br>
<br clear="all">
<br>
-- <br>
<div dir="ltr">Jean-Christophe Loiseau<br>
<a moz-do-not-send="true"
href="https://sites.google.com/site/loiseaujc/"
target="_blank">Homepage</a><br>
</div>
</div>
<br>
<fieldset target="_blank"></fieldset>
<br>
<pre>_______________________________________________
Nek5000-users mailing list
<a moz-do-not-send="true" href="mailto:Nek5000-users@lists.mcs.anl.gov" target="_blank">Nek5000-users@lists.mcs.anl.gov</a>
<a moz-do-not-send="true" href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users" target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users</a>
</pre>
</blockquote>
<br>
</div>
</div>
</div>
<br>
<fieldset target="_blank"></fieldset>
<br>
<pre>_______________________________________________
Nek5000-users mailing list
<a moz-do-not-send="true" href="mailto:Nek5000-users@lists.mcs.anl.gov" target="_blank">Nek5000-users@lists.mcs.anl.gov</a>
<a moz-do-not-send="true" href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users" target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users</a>
</pre>
</blockquote>
<br>
</div>
<br>
_______________________________________________<br>
Nek5000-users mailing list<br>
<a moz-do-not-send="true"
href="mailto:Nek5000-users@lists.mcs.anl.gov"
target="_blank">Nek5000-users@lists.mcs.anl.gov</a><br>
<a moz-do-not-send="true"
href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users"
target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users</a><br>
<br>
</blockquote>
</div>
<br>
<fieldset class="mimeAttachmentHeader" target="_blank"></fieldset>
<br>
<pre>_______________________________________________
Nek5000-users mailing list
<a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:Nek5000-users@lists.mcs.anl.gov" target="_blank">Nek5000-users@lists.mcs.anl.gov</a>
<a moz-do-not-send="true" class="moz-txt-link-freetext" href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users" target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users</a>
</pre>
</blockquote>
<br>
</div>
</div>
</div>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
Nek5000-users mailing list
<a class="moz-txt-link-abbreviated" href="mailto:Nek5000-users@lists.mcs.anl.gov">Nek5000-users@lists.mcs.anl.gov</a>
<a class="moz-txt-link-freetext" href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users">https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users</a>
</pre>
</blockquote>
<br>
</body>
</html>