Thanks. I will be eagerly waiting for this.<div><br></div><div>praveen<br><br><div class="gmail_quote">On Thu, Nov 29, 2012 at 4:15 AM, <span dir="ltr"><<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Oh, right, ok. I'd forgotten that those parts of NekCEM and Nek5000 are different.<br>
<br>
- tim<br>
<br>
On 11/28/2012 01:35 PM, Misun Min wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
Hi Tim<br>
<br>
MOAB supporting 2D quad meshes have been tested for NekCEM/LBM<br>
codes but not tested with nek5000. I'll check with Aleks to make<br>
sure the updated moab routines not to conflict with nek5000 and<br>
commit soon.<br>
<br>
Thanks<br>
Misun<div><div class="h5"><br>
<br>
----- Original Message -----<br>
From: "Tim Tautges" <<a href="mailto:tautges@mcs.anl.gov" target="_blank">tautges@mcs.anl.gov</a>><br>
To: <a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.<u></u>gov</a>, "Misun Min" <<a href="mailto:mmin@mcs.anl.gov" target="_blank">mmin@mcs.anl.gov</a>><br>
Sent: Wednesday, November 28, 2012 1:23:02 PM<br>
Subject: Re: [Nek5000-users] Setting up a case from scratch<br>
<br>
Misun and one of her students had that working recently, but I'm not sure if all her updates have been committed to the<br>
code. Misun?<br>
<br>
- tim<br>
<br>
On 11/28/2012 11:28 AM, <a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.<u></u>gov</a> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
It looks like Nek does not get the mesh from MOAB...<br>
<br>
Also I doubt the currecnt version of Nek/MOAB supports 2D Quad meshes -- only 3D hexes, right, Tim?<br>
<br>
Thanks.<br>
Aleks<br>
<br>
<br>
----- Original Message -----<br>
From: <a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.<u></u>gov</a><br>
To: <a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.<u></u>gov</a><br>
Sent: Wed, 28 Nov 2012 11:23:04 -0600 (CST)<br>
Subject: Re: [Nek5000-users] Setting up a case from scratch<br>
<br>
Thanks. I am making little progress. Now I can compile. When running on h5m<br>
mesh I get<br>
<br>
read .rea file<br>
ABORT: nelv is invalid in nekmoab_proc_map<br>
nelv, lelv = 0 1850<br>
<br>
But mbsize shows<br>
<br>
$ mbsize karman.h5m<br>
File karman.h5m:<br>
type count total minimum average rms maximum<br>
std.dev.<br>
------- ----- ------- ----------- ----------- ----------- -----------<br>
-----------<br>
Edge 212 5.5 0.0063678 0.026102 0.029283 0.048844<br>
0.013273<br>
Quad 1832 0.89 3.8386e-05 0.0004881 0.00054375 0.0011788<br>
0.00023963<br>
1D Side 7328 1.8e+02 0.0037915 0.024086 0.027266 0.048844<br>
0.012777<br>
Vertex 7540<br>
<br>
praveen<br>
<br>
On Wed, Nov 28, 2012 at 10:27 PM, <<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.<u></u>gov</a>> wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Praven,<br>
<br>
use examples/moab/SIZE<br>
<br>
Thanks.<br>
Aleks<br>
<br>
<br>
<br>
On Wed, 28 Nov 2012, nek5000-users@lists.mcs.anl.**<u></u>gov<<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.<u></u>anl.gov</a>>wrote:<br>
<br>
The gmsh file does have all vertices for the higher order elements.<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
I am now trying to compile with moab. I am doing everything in serial for<br>
now. I compiled moab succesfully and can convert from gmsh to h5m.<br>
<br>
But when compiling nek with moab I get this type of errors. This is the<br>
first one.<br>
<br>
gcc -c -O2 -DMOAB -DPTRSIZE8 -DLONGINT8 -DUNDERSCORE -DGLOBAL_LONG_LONG<br>
/Users/praveen/Applications/**<u></u>nek5_svn/trunk/nek/3rd_party/*<u></u>*imeshcutil.c<br>
-o<br>
obj/imeshcutil.o<br>
SIZE:5.21:<br>
Included at<br>
/Users/praveen/Applications/**<u></u>nek5_svn/trunk/nek/3rd_party/*<u></u>*MOABCORE:17:<br>
Included at<br>
/Users/praveen/Applications/**<u></u>nek5_svn/trunk/nek/3rd_party/*<u></u>*NEKMOAB:51:<br>
Included at<br>
/Users/praveen/Applications/**<u></u>nek5_svn/trunk/nek/3rd_party/*<u></u>*moab.f:79:<br>
<br>
parameter (ldim=2)<br>
1<br>
Error: Symbol 'ldim' at (1) has no IMPLICIT type<br>
<br>
My makenek looks like this<br>
<br>
# Fortran compiler<br>
F77="gfortran"<br>
<br>
# C compiler<br>
CC="gcc"<br>
<br>
# pre-processor symbol list<br>
# (set PPLIST=? to get a list of available symbols)<br>
PPLIST="MOAB"<br>
<br>
# plug-in list<br>
PLUGIN_LIST=""<br>
<br>
<br>
# OPTIONAL SETTINGS<br>
# -----------------<br>
<br>
# enable MPI (default true)<br>
IFMPI="false"<br>
<br>
# auxilliary files to compile<br>
# NOTE: source files have to located in the same directory as makenek<br>
# a makefile_usr.inc has to be provided containing the build rules<br>
#USR="foo.o"<br>
<br>
# linking flags<br>
#USR_LFLAGS="-L/usr/lib -lfoo"<br>
<br>
<br>
# generic compiler flags<br>
#G="-g"<br>
<br>
# optimization flags<br>
#OPT_FLAGS_STD=""<br>
#OPT_FLAGS_MAG=""<br>
<br>
# enable AMG coarse grid solver (default XXT)<br>
#IFAMG="true"<br>
#IFAMG_DUMP="true"<br>
<br>
# CVODE path<br>
#CVODE_DIR=$HOME/cvode/lib<br>
<br>
# MOAB/iMESH path<br>
MOAB_DIR="/opt/moab"<br>
<br>
# For linking to MOAB, the following might be needed:<br>
# NOTE: compiler specific, use the appropriate one depending on your<br>
compiler<br>
# GNU:<br>
USR_LFLAGS="-lmpi_cxx -lstdc++"<br>
# Intel:<br>
# USR_LFLAGS="-cxxlib"<br>
# PGI:<br>
# USR_LFLAGS="-pgcpplibs"<br>
# USR_LFLAGS=" -lmpi_cxx -lstdc++"<br>
<br>
What am I doing wrong ?<br>
<br>
Thanks<br>
praveen<br>
<br>
On Wed, Nov 28, 2012 at 8:46 PM, <nek5000-users@lists.mcs.anl.*<u></u>*gov<<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.<u></u>anl.gov</a>>><br>
wrote:<br>
<br>
Try running 'mbsize' on the gmsh file, and check the number of vertices<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
to<br>
make sure it's getting all of them. Or, run mbsize -ll, piping the<br>
output<br>
to a file, and check one of the hexes to make sure it's 27-noded. If<br>
that's the case, we're all set (modulo how to handle the BC's).<br>
<br>
- tim<br>
<br>
<br>
</blockquote>
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</div></div></blockquote><div class="HOEnZb"><div class="h5">
<br>
-- <br>
==============================<u></u>==============================<u></u>====<br>
"You will keep in perfect peace him whose mind is<br>
steadfast, because he trusts in you." Isaiah 26:3<br>
<br>
Tim Tautges Argonne National Laboratory<br>
(<a href="mailto:tautges@mcs.anl.gov" target="_blank">tautges@mcs.anl.gov</a>) (telecommuting from UW-Madison)<br>
phone (gvoice): (608) 354-1459 1500 Engineering Dr.<br>
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