Hi,<br><br>Sorry for this very late response, it completely got out of my mind. Here are the different outputs I get for these commands:<br><br><div style="margin-left:80px">jean-christophe@dyf-corto:~/Calculs/Cavite2D/BaseFlow$ ulimit -a<br>
core file size (blocks, -c) 0<br>data seg size (kbytes, -d) unlimited<br>scheduling priority (-e) 0<br>file size (blocks, -f) unlimited<br>pending signals (-i) 31533<br>
max locked memory (kbytes, -l) 64<br>max memory size (kbytes, -m) unlimited<br>open files (-n) 1024<br>pipe size (512 bytes, -p) 8<br>POSIX message queues (bytes, -q) 819200<br>
real-time priority (-r) 0<br>stack size (kbytes, -s) 8192<br>cpu time (seconds, -t) unlimited<br>max user processes (-u) 31533<br>virtual memory (kbytes, -v) unlimited<br>
file locks (-x) unlimited<br><br>jean-christophe@dyf-corto:~/Calculs/Cavite2D/BaseFlow$ size nek5000 <br> text data bss dec hex filename<br>2232834 3484 185835044 188071362 b35bdc2 nek5000<br>
<br>jean-christophe@dyf-corto:~/Calculs/Cavite2D/BaseFlow$ cat SIZE <br>C Dimension file to be included<br>C<br>C HCUBE array dimensions<br>C<br> parameter (ldim=2)<br> parameter (lx1=11,ly1=lx1,lz1=1,lelt=225,lelv=lelt)<br>
parameter (lxd=17,lyd=lxd,lzd=1)<br> parameter (lelx=20,lely=60,lelz=1)<br>c<br> parameter (lzl=3 + 2*(ldim-3))<br>c<br> parameter (lx2=lx1-2)<br> parameter (ly2=ly1-2)<br> parameter (lz2=1)<br>
parameter (lx3=lx2)<br> parameter (ly3=ly2)<br> parameter (lz3=lz2)<br>c<br>c parameter (lpelv=lelv,lpelt=lelt,lpert=3) ! perturbation<br>c parameter (lpx1=lx1,lpy1=ly1,lpz1=lz1) ! array sizes<br>
c parameter (lpx2=lx2,lpy2=ly2,lpz2=lz2)<br>c<br> parameter (lpelv=1,lpelt=1,lpert=1) ! perturbation<br> parameter (lpx1=1,lpy1=1,lpz1=1) ! array sizes<br> parameter (lpx2=1,lpy2=1,lpz2=1)<br>
c<br>c<br>c parameter (lbelv=lelv,lbelt=lelt) ! MHD<br>c parameter (lbx1=lx1,lby1=ly1,lbz1=lz1) ! array sizes<br>c parameter (lbx2=lx2,lby2=ly2,lbz2=lz2)<br>c<br> parameter (lbelv=1,lbelt=1) ! MHD<br>
parameter (lbx1=1,lby1=1,lbz1=1) ! array sizes<br> parameter (lbx2=1,lby2=1,lbz2=1)<br>c<br>C LX1M=LX1 when there are moving meshes; =1 otherwise<br> parameter (lx1m=lx1,ly1m=ly1,lz1m=lz1)<br> parameter (ldimt= 4) ! 3 passive scalars + T<br>
parameter (ldimt1=ldimt+1)<br> parameter (ldimt3=ldimt+3)<br> parameter (lp = 8)<br> parameter (lelg = 300)<br>c<br>c Note: In the new code, LELGEC should be about sqrt(LELG)<br>c<br> PARAMETER (LELGEC = 1)<br>
PARAMETER (LXYZ2 = 1)<br> PARAMETER (LXZ21 = 1)<br>c<br> PARAMETER (LMAXV=LX1*LY1*LZ1*LELV)<br> PARAMETER (LMAXT=LX1*LY1*LZ1*LELT)<br> PARAMETER (LMAXP=LX2*LY2*LZ2*LELV)<br> PARAMETER (LXZ=LX1*LZ1)<br>
PARAMETER (LORDER=3)<br> PARAMETER (MAXOBJ=4,MAXMBR=LELT*6,lhis=100)<br>C<br>C Common Block Dimensions<br>C<br> PARAMETER (LCTMP0 =2*LX1*LY1*LZ1*LELT)<br> PARAMETER (LCTMP1 =4*LX1*LY1*LZ1*LELT)<br>
C<br>C The parameter LVEC controls whether an additional 42 field arrays<br>C are required for Steady State Solutions. If you are not using<br>C Steady State, it is recommended that LVEC=1.<br>C<br> PARAMETER (LVEC=1)<br>
C<br>C Uzawa projection array dimensions<br>C<br> parameter (mxprev = 80)<br> parameter (lgmres = 40)<br>C<br>C Split projection array dimensions<br>C<br> parameter(lmvec = 1)<br> parameter(lsvec = 1)<br>
parameter(lstore=lmvec*lsvec)<br>c<br>c NONCONFORMING STUFF<br>c<br> parameter (maxmor = lelt)<br>C<br>C Array dimensions<br>C<br> COMMON/DIMN/NELV,NELT,NX1,NY1,NZ1,NX2,NY2,NZ2<br> $,NX3,NY3,NZ3,NDIM,NFIELD,NPERT,NID<br>
$,NXD,NYD,NZD<br><br>c automatically added by makenek<br> parameter(lxo = lx1) ! max output grid size (lxo>=lx1)<br><br>c automatically added by makenek<br> parameter(lpart = 1 ) ! max number of particles<br>
<br>c automatically added by makenek<br> integer ax1,ay1,az1,ax2,ay2,az2<br> parameter (ax1=lx1,ay1=ly1,az1=lz1,ax2=lx2,ay2=ly2,az2=lz2) ! running averages<br><br>c automatically added by makenek<br> parameter (lxs=1,lys=lxs,lzs=(lxs-1)*(ldim-2)+1) !New Pressure Preconditioner<br>
<br>c automatically added by makenek<br> parameter (lfdm=0) ! == 1 for fast diagonalization method<br></div><br>Concerning
Nek, yes I do get an output on the screen when lauching the
calculation. Attached is the logfile for one example (2D cavity, only
with 100 elements though but the problem is the same as I increase the
number of elements).<br>
<br>Cheers,<br><br><div class="gmail_quote">On 18 October 2011 18:03, Jean-Christophe Loiseau <span dir="ltr"><<a href="mailto:loiseau.jc@gmail.com">loiseau.jc@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Hi,<br><br>Sorry for this very late response, it completely got out of my mind. Here are the different outputs I get for these commands:<br><br><div style="margin-left:80px">jean-christophe@dyf-corto:~/Calculs/Cavite2D/BaseFlow$ ulimit -a<br>
core file size (blocks, -c) 0<br>data seg size (kbytes, -d) unlimited<br>scheduling priority (-e) 0<br>file size (blocks, -f) unlimited<br>pending signals (-i) 31533<br>
max locked memory (kbytes, -l) 64<br>max memory size (kbytes, -m) unlimited<br>open files (-n) 1024<br>pipe size (512 bytes, -p) 8<br>POSIX message queues (bytes, -q) 819200<br>
real-time priority (-r) 0<br>stack size (kbytes, -s) 8192<br>cpu time (seconds, -t) unlimited<br>max user processes (-u) 31533<br>virtual memory (kbytes, -v) unlimited<br>
file locks (-x) unlimited<br><br>jean-christophe@dyf-corto:~/Calculs/Cavite2D/BaseFlow$ size nek5000 <br> text data bss dec hex filename<br>2232834 3484 185835044 188071362 b35bdc2 nek5000<br>
<br>jean-christophe@dyf-corto:~/Calculs/Cavite2D/BaseFlow$ cat SIZE <br>C Dimension file to be included<br>C<br>C HCUBE array dimensions<br>C<br> parameter (ldim=2)<br> parameter (lx1=11,ly1=lx1,lz1=1,lelt=225,lelv=lelt)<br>
parameter (lxd=17,lyd=lxd,lzd=1)<br> parameter (lelx=20,lely=60,lelz=1)<br>c<br> parameter (lzl=3 + 2*(ldim-3))<br>c<br> parameter (lx2=lx1-2)<br> parameter (ly2=ly1-2)<br> parameter (lz2=1)<br>
parameter (lx3=lx2)<br> parameter (ly3=ly2)<br> parameter (lz3=lz2)<br>c<br>c parameter (lpelv=lelv,lpelt=lelt,lpert=3) ! perturbation<br>c parameter (lpx1=lx1,lpy1=ly1,lpz1=lz1) ! array sizes<br>
c parameter (lpx2=lx2,lpy2=ly2,lpz2=lz2)<br>c<br> parameter (lpelv=1,lpelt=1,lpert=1) ! perturbation<br> parameter (lpx1=1,lpy1=1,lpz1=1) ! array sizes<br> parameter (lpx2=1,lpy2=1,lpz2=1)<br>
c<br>c<br>c parameter (lbelv=lelv,lbelt=lelt) ! MHD<br>c parameter (lbx1=lx1,lby1=ly1,lbz1=lz1) ! array sizes<br>c parameter (lbx2=lx2,lby2=ly2,lbz2=lz2)<br>c<br> parameter (lbelv=1,lbelt=1) ! MHD<br>
parameter (lbx1=1,lby1=1,lbz1=1) ! array sizes<br> parameter (lbx2=1,lby2=1,lbz2=1)<br>c<br>C LX1M=LX1 when there are moving meshes; =1 otherwise<br> parameter (lx1m=lx1,ly1m=ly1,lz1m=lz1)<br> parameter (ldimt= 4) ! 3 passive scalars + T<br>
parameter (ldimt1=ldimt+1)<br> parameter (ldimt3=ldimt+3)<br> parameter (lp = 8)<br> parameter (lelg = 300)<br>c<br>c Note: In the new code, LELGEC should be about sqrt(LELG)<br>c<br> PARAMETER (LELGEC = 1)<br>
PARAMETER (LXYZ2 = 1)<br> PARAMETER (LXZ21 = 1)<br>c<br> PARAMETER (LMAXV=LX1*LY1*LZ1*LELV)<br> PARAMETER (LMAXT=LX1*LY1*LZ1*LELT)<br> PARAMETER (LMAXP=LX2*LY2*LZ2*LELV)<br> PARAMETER (LXZ=LX1*LZ1)<br>
PARAMETER (LORDER=3)<br> PARAMETER (MAXOBJ=4,MAXMBR=LELT*6,lhis=100)<br>C<br>C Common Block Dimensions<br>C<br> PARAMETER (LCTMP0 =2*LX1*LY1*LZ1*LELT)<br> PARAMETER (LCTMP1 =4*LX1*LY1*LZ1*LELT)<br>
C<br>C The parameter LVEC controls whether an additional 42 field arrays<br>C are required for Steady State Solutions. If you are not using<br>C Steady State, it is recommended that LVEC=1.<br>C<br> PARAMETER (LVEC=1)<br>
C<br>C Uzawa projection array dimensions<br>C<br> parameter (mxprev = 80)<br> parameter (lgmres = 40)<br>C<br>C Split projection array dimensions<br>C<br> parameter(lmvec = 1)<br> parameter(lsvec = 1)<br>
parameter(lstore=lmvec*lsvec)<br>c<br>c NONCONFORMING STUFF<br>c<br> parameter (maxmor = lelt)<br>C<br>C Array dimensions<br>C<br> COMMON/DIMN/NELV,NELT,NX1,NY1,NZ1,NX2,NY2,NZ2<br> $,NX3,NY3,NZ3,NDIM,NFIELD,NPERT,NID<br>
$,NXD,NYD,NZD<br><br>c automatically added by makenek<br> parameter(lxo = lx1) ! max output grid size (lxo>=lx1)<br><br>c automatically added by makenek<br> parameter(lpart = 1 ) ! max number of particles<br>
<br>c automatically added by makenek<br> integer ax1,ay1,az1,ax2,ay2,az2<br> parameter (ax1=lx1,ay1=ly1,az1=lz1,ax2=lx2,ay2=ly2,az2=lz2) ! running averages<br><br>c automatically added by makenek<br> parameter (lxs=1,lys=lxs,lzs=(lxs-1)*(ldim-2)+1) !New Pressure Preconditioner<br>
<br>c automatically added by makenek<br> parameter (lfdm=0) ! == 1 for fast diagonalization method<br></div><br>Concerning Nek, yes I do get an output on the screen when lauching the calculation. Attached is the logfile for one example (2D cavity, only with 100 elements though but the problem is the same as I increase the number of elements).<br>
<br>Cheers,<div><div></div><div class="h5"><br><br><div class="gmail_quote">On 27 September 2011 17:40, <span dir="ltr"><<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi,<br>
<br>
Do you get any output printed to the screen when you launch Nek?<br>
Please provide the output of the following command:<br>
ulimit -a (in case you are using bash)<br>
size nek5000<br>
cat SIZE<br>
<br>
Can you post the command you are using to launch Nek in parallel?<br>
<br>
Cheers,<br>
Stefan<br>
<br>
<br>
<br>
On 9/27/11, <a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a><br>
<div><div></div><div><<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>> wrote:<br>
> Hi Neks,<br>
><br>
> I do get the same error when I try to run nek on my laptop. Did you find any<br>
> way to solve the problem John?<br>
><br>
> Regards,<br>
><br>
> On 11 May 2011 21:25, <<a href="mailto:nek5000-users@lists.mcs.anl.gov" target="_blank">nek5000-users@lists.mcs.anl.gov</a>> wrote:<br>
><br>
>> Hi,<br>
>><br>
>> I have lp=512 in SIZE, and I did compile with IFMPI=true. I recompiled<br>
>> yesterday because I thought this may be the case, but I was still getting<br>
>> the same error. When I first start a simulation and run top, it shows<br>
>> four<br>
>> processors running nek5000, but this changes to one processor after a few<br>
>> seconds.<br>
>><br>
>> Thanks,<br>
>><br>
>> John<br>
>><br>
>> _______________________________________________<br>
>> Nek5000-users mailing list<br>
>> <a href="mailto:Nek5000-users@lists.mcs.anl.gov" target="_blank">Nek5000-users@lists.mcs.anl.gov</a><br>
>> <a href="https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users" target="_blank">https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users</a><br>
>><br>
>><br>
><br>
><br>
> --<br>
> Jean-Christophe<br>
><br>
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</div></div></blockquote></div><br><br clear="all"><br></div></div><font color="#888888">-- <br>Jean-Christophe<br>
</font></blockquote></div><br><br clear="all"><br>-- <br>Jean-Christophe<br>