[Nek5000-users] ERROR: e-solver does not exist

nek5000-users at lists.mcs.anl.gov nek5000-users at lists.mcs.anl.gov
Fri Jan 12 06:00:55 CST 2018


Your mesh seems to be messed up (see zmax below).

On 12 Jan 2018, at 00:14, "nek5000-users at lists.mcs.anl.gov <mailto:nek5000-users at lists.mcs.anl.gov> " <nek5000-users at lists.mcs.anl.gov <mailto:nek5000-users at lists.mcs.anl.gov> > wrote:

Im trying to make a turbulance flow 2d rectangular box and getting this 
error

/----------------------------------------------------------\\
|      _   __ ______ __ __  ______  ____   ____   ____     |
|     / | / // ____// //_/ / ____/ / __ \\/ __ \\/ __ \\   |
|    /  |/ // __/  / ,<   /___ \\ / / / // / / // / / /    |
|   / /|  // /___ / /| | ____/ / / /_/ // /_/ // /_/ /     |
|  /_/ |_//_____//_/ |_|/_____/  \\___/ \\___/ \\___/      |
|                                                          |
|----------------------------------------------------------|
|                                                          |
| NEK5000:  Open Source Spectral Element Solver            |
| COPYRIGHT (c) 2008-2017 UCHICAGO ARGONNE, LLC            |
| Version:  v17.0                                          |
| Web:      http://nek5000.mcs.anl.gov <http://nek5000.mcs.anl.gov>                      |
|                                                          |
\\----------------------------------------------------------/


  Number of processors:           8
  REAL    wdsize      :           8
  INTEGER wdsize      :           4
  Timer accuracy      : 4.83E-08

  Reading /home/Nek5000/run/git/NewBarc/NewBarc.rea
  Reading /home/Nek5000/run/git/NewBarc/NewBarc.re2
  mapping elements to processors
  Reading /home/Nek5000/run/git/NewBarc/NewBarc.ma2
            0          91          91         730         730  NELV
            1          91          91         730         730  NELV
            2          91          91         730         730  NELV
            3          92          92         730         730  NELV
            4          91          91         730         730  NELV
            5          91          91         730         730  NELV
            6          91          91         730         730  NELV
            7          92          92         730         730  NELV
  RANK     0 IEG     351     352     353     354     355 356     381     382
                     383     384     385     386     387 388     389     391
                     392     393     394     395     396 397     398     399
                     401     402     403     404     405 406     407     408
                     409     411     412     413     414 415     416     417
                     418     419     421     422     423 424     425     426
                     427     428     429     431     432 433     434     435
                     436     437     438     441     442 443     444     445
                     446     447     448     451     452 453     454     455
                     456     457     458     461     462 463     464     465
                     466     467     468     471     472 473     474     475
                     476     477     478

  element load imbalance:            1          91          92
  done :: mapping   0.13924E-02 sec


   preading mesh
   preading bc for ifld           1
  done :: read .re2 file   0.45E-02 sec

            0  objects found
  103   Parameters from file:
    1          1.000000         p01 DENSITY
    2         -40000.00         p02 VISCOS
   11         280000.000        p11 NSTEPS
   12        -.10000000E-04     p12 DT
   15          500.0000         p15 IOSTEP
   21         1.0000000E-05
   22         1.0000000E-08     p22 HELMHOLTZ
   24         1.0000000E-02     p24 TOLREL
   25         1.0000000E-02     p25 TOLABS
   26          2.000000         p26 COURANT/NTAU
   27          3.000000         p27 TORDER
   59         0.0000000E+00     p59 !=0 --> use std axhelm for all elem
   65         1.0000000E+00     p65 #iofile(eg,0 or 64); <0 --> sep. dirs
   66          6.000000         p66 write fmt:ONLY postx uses rea value
   67          6.000000         p67 read fmt: same modes as p66
   68         200000.00E+00     p68 iastep: freq for avg_all
   93          20.00000         p93 Numbr of prev pressure solns saved
   94          5.000000         p94 start projecting vel. after p94 step
   95          5.000000         p95 start projecting pr after p95 step
   99          4.000000         p99    dealiasing:if <0 disable
  101         2.0000000E+00     p101   No. of additional filter modes
  103         5.0000000E-01     p103   weight of stabilizing filter (.01)

  done :: read .rea file   0.85864E-02 sec

  nelgt/nelgv/lelt:         730         730          92
  lx1  /lx2  /lx3 :           6           6           6
  setup mesh topology
    Right-handed check complete for     730 elements. OK.
    setvert2d:   6        6880       18560        6880        6880
  call usrsetvert
  done :: usrsetvert

gs_setup: 507 unique labels shared
    pairwise times (avg, min, max): 4.50263e-06 4.3549e-06 4.572e-06
    crystal router                : 7.19253e-06 7.1082e-06 7.2708e-06
    all reduce                    : 9.94137e-05 9.93523e-05 9.9448e-05
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 22683 22012 23620
    buffer bytes (avg, min, max): 2084 1648 2720
    setupds time 1.0156E-02 seconds   0  6        6880         730
            4  max multiplicity
  done :: setup mesh topology

  call usrdat
  done :: usrdat

  generate geometry data
  NOTE: All elements deformed , param(59) ^=0
  done :: generate geometry data

  call usrdat2
  done :: usrdat2

  regenerate geometry data           1
  NOTE: All elements deformed , param(59) ^=0
  done :: regenerate geometry data           1

  verify mesh topology
   -2.3561944901923448        3.9269908169872418       Xrange
   -1.0000000000000000        1.0000000000000000       Yrange
    9.9000000000000010E+021  -9.9000000000000010E+021  Zrange
  done :: verify mesh topology

  IFTRAN   = T
  IFFLOW   = T
  IFHEAT   = F
  IFSPLIT  = T
  IFLOMACH = F
  IFUSERVP = F
  IFUSERMV = F
  IFPERT   = F
  IFADJ    = F
  IFSTRS   = F
  IFCHAR   = T
  IFCYCLIC = F
  IFAXIS   = F
  IFMVBD   = F
  IFMELT   = F
  IFNEKNEK = F
  IFSYNC   = F

  IFVCOR   = F
  IFINTQ   = F
  IFGEOM   = F
  IFSURT   = F
  IFWCNO   = F

  IFTMSH for field           1    =  F
  IFADVC for field           1    =  T
  IFNONL for field           1    =  F

  Dealiasing enabled, lxd=           9

  Estimated eigenvalues
  EIGAA =    1.3587005501361697
  EIGGA =    1269143.4772368053
  EIGAE =   0.25000000000000000
  EIGAS =    2.2999917087593809E-002
  EIGGE =    1269143.4772368053
  EIGGS =    2.0000000000000000

  verify mesh topology
   -2.3561944901923448        3.9269908169872418       Xrange
   -1.0000000000000000        1.0000000000000000       Yrange
    9.9000000000000010E+021  -9.9000000000000010E+021  Zrange
  done :: verify mesh topology

   E-solver strategy:  0 itr
  mg_nx:           1           3           5
  mg_ny:           1           3           5
  mg_nz:           0           0           0
  call usrsetvert
  done :: usrsetvert

gs_setup: 103 unique labels shared
    pairwise times (avg, min, max): 2.35579e-06 2.2701e-06 2.4383e-06
    crystal router                : 4.06828e-06 3.9056e-06 4.3852e-06
    all reduce                    : 4.63608e-06 4.5825e-06 4.698e-06
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 4695 4540 4900
    buffer bytes (avg, min, max): 468 368 608
    setupds time 9.6015E-04 seconds   1  2         792         730
    setvert2d:   4        3836        6756        3836        3836
  call usrsetvert
  done :: usrsetvert

gs_setup: 305 unique labels shared
    pairwise times (avg, min, max): 2.88736e-06 2.7693e-06 2.9417e-06
    crystal router                : 5.67697e-06 5.5738e-06 5.7281e-06
    all reduce                    : 1.5845e-05 7.419e-06 2.43007e-05
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 13689 13276 14260
    buffer bytes (avg, min, max): 1276 1008 1664
    setupds time 2.7936E-03 seconds   2  4        3836         730
    setvert2d:   4        3836        6756        3836        3836
  call usrsetvert
  done :: usrsetvert

gs_setup: 305 unique labels shared
    pairwise times (avg, min, max): 2.74806e-06 2.6386e-06 2.849e-06
    crystal router                : 5.45844e-06 5.3276e-06 5.5491e-06
    all reduce                    : 7.42733e-06 7.3395e-06 7.5135e-06
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 13689 13276 14260
    buffer bytes (avg, min, max): 1276 1008 1664
    setupds time 1.7463E-03 seconds   3  4        3836         730
    setvert2d:   6        6880       18560        6880        6880
  call usrsetvert
  done :: usrsetvert

gs_setup: 507 unique labels shared
    pairwise times (avg, min, max): 2.98656e-06 2.8975e-06 3.0673e-06
    crystal router                : 1.37999e-05 1.36954e-05 1.38856e-05
    all reduce                    : 1.64007e-05 1.62838e-05 1.65981e-05
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 22683 22012 23620
    buffer bytes (avg, min, max): 2084 1648 2720
    setupds time 2.4769E-03 seconds   4  6        6880         730
  regenerate geometry data           1
  NOTE: All elements deformed , param(59) ^=0
  done :: regenerate geometry data           1

  h1_mg_nx:           1           3           5
  h1_mg_ny:           1           3           5
  h1_mg_nz:           0           0           0
  call usrsetvert
  done :: usrsetvert

gs_setup: 103 unique labels shared
    pairwise times (avg, min, max): 2.37065e-06 2.3153e-06 2.4607e-06
    crystal router                : 3.88401e-06 3.7749e-06 3.9709e-06
    all reduce                    : 4.90976e-06 4.8233e-06 5.0116e-06
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 4695 4540 4900
    buffer bytes (avg, min, max): 468 368 608
    setupds time 9.4292E-04 seconds   5  2         792         730
    setvert2d:   4        3836        6756        3836        3836
  call usrsetvert
  done :: usrsetvert

gs_setup: 305 unique labels shared
    pairwise times (avg, min, max): 2.91439e-06 2.7588e-06 3.0219e-06
    crystal router                : 5.61719e-06 5.5624e-06 5.6535e-06
    all reduce                    : 7.48192e-06 7.4368e-06 7.5201e-06
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 13689 13276 14260
    buffer bytes (avg, min, max): 1276 1008 1664
    setupds time 2.3787E-03 seconds   6  4        3836         730
    setvert2d:   4        3836        6756        3836        3836
  call usrsetvert
  done :: usrsetvert

gs_setup: 305 unique labels shared
    pairwise times (avg, min, max): 2.94944e-06 2.7296e-06 3.1507e-06
    crystal router                : 5.54658e-06 5.4843e-06 5.5919e-06
    all reduce                    : 7.52008e-06 7.3959e-06 7.6057e-06
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 13689 13276 14260
    buffer bytes (avg, min, max): 1276 1008 1664
    setupds time 1.8404E-03 seconds   7  4        3836         730
    setvert2d:   6        6880       18560        6880        6880
  call usrsetvert
  done :: usrsetvert

gs_setup: 507 unique labels shared
    pairwise times (avg, min, max): 3.04339e-06 2.9536e-06 3.1081e-06
    crystal router                : 7.14937e-06 7.0897e-06 7.1979e-06
    all reduce                    : 1.48502e-05 1.47878e-05 1.49567e-05
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 22683 22012 23620
    buffer bytes (avg, min, max): 2084 1648 2720
    setupds time 2.3173E-03 seconds   8  6        6880         730
    setvert2d:   6        6880       18560        6880        6880
  call usrsetvert
  done :: usrsetvert

gs_setup: 507 unique labels shared
    pairwise times (avg, min, max): 2.87688e-06 2.7267e-06 2.9336e-06
    crystal router                : 7.30052e-06 7.2595e-06 7.3437e-06
    all reduce                    : 1.4766e-05 1.46617e-05 1.48032e-05
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 22683 22012 23620
    buffer bytes (avg, min, max): 2084 1648 2720
    setupds time 2.2158E-03 seconds   9  6        6880         730
    setvert2d:   8        9924       36204        9924        9924
  call usrsetvert
  done :: usrsetvert

gs_setup: 709 unique labels shared
    pairwise times (avg, min, max): 3.12636e-06 2.9746e-06 3.2381e-06
    crystal router                : 8.53711e-06 8.4963e-06 8.5871e-06
    all reduce                    : 1.69634e-05 1.68605e-05 1.70839e-05
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 31677 30748 32980
    buffer bytes (avg, min, max): 2892 2288 3776
    setupds time 3.4194E-03 seconds  10  8        9924         730
  setup h1 coarse grid, nx_crs=           2
  call usrsetvert
  done :: usrsetvert

gs_setup: 103 unique labels shared
    pairwise times (avg, min, max): 2.45545e-06 2.3334e-06 2.5351e-06
    crystal router                : 3.81156e-06 3.7179e-06 3.8942e-06
    all reduce                    : 4.5149e-06 4.4852e-06 4.5619e-06
    used all_to_all method: pairwise
    handle bytes (avg, min, max): 4695 4540 4900
    buffer bytes (avg, min, max): 468 368 608
  done :: setup h1 coarse grid    3.5807990061584860E-003  sec

  call usrdat3
  done :: usrdat3

  set initial conditions
  nekuic (1) for ifld            1
  call nekuic for vel
  xyz min    -2.3562      -1.0000      0.99000E+22
  uvwpt min  0.99000E+22  0.99000E+22  0.99000E+22   0.0000 0.0000
  PS min      0.0000      0.99000E+22
  xyz max     3.9270       1.0000     -0.99000E+22
  uvwpt max -0.99000E+22 -0.99000E+22 -0.99000E+22   0.0000 0.0000
  PS max      0.0000     -0.99000E+22
  done :: set initial conditions

  call userchk
    0.0000E+00          NaN          NaN monitor
  Start collecting statistics ...
  done :: userchk

gridpoints unique/tot:         18560        26280
   dofs:                18394                26280

  Initialization successfully completed   0.76199E-01 sec

Starting time loop ...

      DT/DTCFL/DTFS/DTINIT   0.100E-04   0.494-323  -0.558-261 0.100E-04
Step      1, time= 1.00000E-05, DT=  1.000E-05
              Solving for fluid
           1  Helmh3 fluid unconverged!    201 NaN          NaN   1.0000E-08
  ERROR: E-solver does not exist           0
  Stop in ESOLVER
  ERROR: E-solver does not exist           0
  Stop in ESOLVER
  ERROR: E-solver does not exist           0
  Stop in ESOLVER
  ERROR: E-solver does not exist           0
  Stop in ESOLVER
  ERROR: E-solver does not exist           0
  Stop in ESOLVER
  ERROR: E-solver does not exist           0
  Stop in ESOLVER
  ERROR: E-solver does not exist           0
  Stop in ESOLVER
  ERROR: E-solver does not exist           0
  Stop in ESOLVER

an error occured: dying ...


total elapsed time             :   1.44827E-01 sec
total solver time w/o IO       :   0.00000E+00 sec
time/timestep                  :   0.00000E+00 sec
avg throughput per timestep    :   0.00000E+00 gridpts/CPUs
total max memory usage         :   1.89690E-01 GB

-------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, 
thus causing
the job to be terminated. The first process to do so was:

   Process name: [[25844,1],0]
   Exit code:    1
--------------------------------------------------------------------------

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