[Nek5000-users] n2to3 mesh size error

nek5000-users at lists.mcs.anl.gov nek5000-users at lists.mcs.anl.gov
Tue Nov 14 07:13:21 CST 2017


What is the number of elements in your mesh?
On Nov 13, 2017, at 11:40 PM, nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov> wrote:


Gmsh to .rea using CPraveen's python mesh converter.

On Mon, Nov 13, 2017, 10:52 PM <nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov>> wrote:
Looks like the boundary conditions in your .rea file are somehow messed up. How do you generate you .rea?

-----Original message-----
> From:nek5000-users at lists.mcs.anl.gov<mailto:From%3Anek5000-users at lists.mcs.anl.gov> <nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov>>
> Sent: Tuesday 14th November 2017 4:47
> To: nek5000-users at lists.mcs.anl.gov<mailto:nek5000-users at lists.mcs.anl.gov>
> Subject: [Nek5000-users] n2to3 mesh size error
>
> Hi all,
>
> I keep running into an error whenever I want to use n2to3 to extrude my mesh from 2 dimensions to 3. My workflow is as follows:
>
> gmsh .geo file -> gmsh .msh file -> .rea file -> n2to3 > .rea (3D) file.
>
> Now if the original 2D .rea file obtained from gmsh contains less than 1000 elements, n2to3 fails with the error
>
> At line 651 of file n2to3.f (unit = 10, file = msh_test.rea)
> Fortran runtime error: Bad value during integer read
>
> However, should this not be the case (mesh size > 1000) its all smooth sailing. The trouble is with a mesh of that size my processor and memory requirements quickly blow up.
>
> Incidentally, genmap fails under almost exactly the same conditions.
>
> Is there a lower limit to mesh size issue for nek5000 that Im missing here?
>
> Sincerely,
> --
> Amitvikram Dutta
> Graduate Research Assistant
> Fluid Mechanics Research Lab
> University of Waterloo
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--

Amitvikram Dutta

Graduate Research Assistant

Fluid Mechanics Research Lab

University of Waterloo

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