[Nek5000-users] maketools all fails at postnek on RHEL6.4
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Wed Dec 14 09:25:03 CST 2016
Good morning,
I just tested using the master version of the v16.0.0 release using both BIGMEM = “true” and BIGMEM = “false” on the ALCF systems. Output below (same for both):
[lfick at cetuslac1 tools]$ ./maketools all
----------------------
Make genmap...
----------------------
make[1]: Entering directory `/gpfs/mira-home/lfick/Nek5000/tools/genmap'
gfortran -fdefault-real-8 -o /home/lfick/bin/genmap genmap.o byte.o
make[1]: Leaving directory `/gpfs/mira-home/lfick/Nek5000/tools/genmap'
----------------------
Make n2to3...
----------------------
make[1]: Entering directory `/gpfs/mira-home/lfick/Nek5000/tools/n2to3'
gfortran -o /home/lfick/bin/n2to3 n2to3.o byte.o
make[1]: Leaving directory `/gpfs/mira-home/lfick/Nek5000/tools/n2to3'
----------------------
Make postnek...
----------------------
make[1]: Entering directory `/gpfs/mira-home/lfick/Nek5000/tools/postnek'
gfortran -c ../../nek/3rd_party/blas.f
gfortran: ../../nek/3rd_party/blas.f: No such file or directory
gfortran: no input files
make[1]: *** [blas.o] Error 1
make[1]: Leaving directory `/gpfs/mira-home/lfick/Nek5000/tools/postnek'
make: *** [all] Error 1
I’ve noticed this before, but when compiling specific tools (reatore2 in my case) it works fine.
Lambert Fick
Graduate Research Assistant | Department of Nuclear Engineering
Texas A&M University
+1 (979) 422-8317 | Lambert.Fick at tamu.edu <mailto:Lambert.Fick at tamu.edu>
> On Dec 14, 2016, at 11:10 AM, nek5000-users at lists.mcs.anl.gov wrote:
>
> Can you try again with release/v16.0.0 (https://github.com/Nek5000/Nek5000/archive/release/v16.0.0.zip)
>
> Cheers,
> Stefan
>
>
> -----Original message-----
>> From:nek5000-users at lists.mcs.anl.gov <nek5000-users at lists.mcs.anl.gov>
>> Sent: Wednesday 14th December 2016 18:06
>> To: nek5000-users at lists.mcs.anl.gov
>> Subject: Re: [Nek5000-users] maketools all fails at postnek on RHEL6.4
>>
>> Using the tarball at https://github.com/Nek5000/nek5000/archive/master.tar.gz to compile locally on my RHEL6.4 server. During maketools event, only the genmap and n2to3 tools are compiled and the make event fails out as shown below. Is
>> this attributed to BIGMEM=true in maketools, or something else? Can anyone help? Error and gcc/gfortran information below
>> Thanks
>> Richard P
>> [user at rhel64 tools]$ gedit maketools
>> [user at rhel64 tools]$ ./maketools all /nfs/home/user/Nek5000
>> ----------------------
>> Make genmap...
>> ----------------------
>> make[1]: Entering directory `/home/user/Nek5000-master/tools/genmap'
>> gfortran -mcmodel=medium -fdefault-real-8 -o /nfs/home/user/Nek5000/genmap genmap.o byte.o
>> make[1]: Leaving directory `/home/user/Nek5000-master/tools/genmap'
>> ----------------------
>> Make n2to3...
>> ----------------------
>> make[1]: Entering directory `/home/user/Nek5000-master/tools/n2to3'
>> gfortran -mcmodel=medium -o /nfs/home/user/Nek5000/n2to3 n2to3.o byte.o
>> make[1]: Leaving directory `/home/user/Nek5000-master/tools/n2to3'
>> ----------------------
>> Make postnek...
>> ----------------------
>> make[1]: Entering directory `/home/user/Nek5000-master/tools/postnek'
>> gfortran -mcmodel=medium -c postnek.f
>> postnek.f:1977.19:
>> ifbswap = if_byte_swap_test(test)
>> 1
>> Warning: Extension: Conversion from INTEGER(4) to LOGICAL(4) at (1)
>> gfortran -mcmodel=medium -c postnek2.f
>> gfortran -mcmodel=medium -c postnek3.f
>> postnek3.f:1552.20:
>> COMMON /CTMP4/ wk(LXYZ,3,3)
>> 1
>> Warning: Named COMMON block 'ctmp4' at (1) shall be of the same size
>> gfortran -mcmodel=medium -c postnek5.f
>> postnek5.f:711.21:
>> COMMON /ccdiag/ iee,iii
>> 1
>> Warning: Named COMMON block 'ccdiag' at (1) shall be of the same size
>> gfortran -mcmodel=medium -c postnek6.f
>> gfortran -mcmodel=medium -c tsort.f
>> gfortran -mcmodel=medium -c postnek8.f
>> devices.inc:22.19:
>> Included at basics.inc:168:
>> Included at postnek8.f:96:
>> COMMON/SCALE/XFAC ,YFAC ,XZERO ,YZERO
>> 1
>> Warning: Named COMMON block 'scale' at (1) shall be of the same size
>> gfortran -mcmodel=medium -c postnek9.f
>> gfortran -mcmodel=medium -c plot.f
>> gfortran -mcmodel=medium -c getfld.f
>> gfortran -mcmodel=medium -c legend.f
>> gfortran -mcmodel=medium -c userf.f
>> userf.f:1282.21:
>> common /rlobjs/ x_l_objs(mopts),y_l_objs(mopts),z_l_objs(mopts)
>> 1
>> Warning: Named COMMON block 'rlobjs' at (1) shall be of the same size
>> userf.f:1816.21:
>> common /rlobjs/ avg(6,0:mopts-1,3)
>> 1
>> Warning: Named COMMON block 'rlobjs' at (1) shall be of the same size
>> userf.f:5261.20:
>> common /ctmp1/ uavg(nxm*nelm),vavg(nxm*nelm),wavg(nxm*nelm)
>> 1
>> Warning: Named COMMON block 'ctmp1' at (1) shall be of the same size
>> gfortran -mcmodel=medium -c trap.f
>> gfortran -mcmodel=medium -c animate.f
>> gfortran -mcmodel=medium -c genxyz.f
>> gfortran -mcmodel=medium -c screen.f
>> gfortran -mcmodel=medium -c g3d.f
>> gfortran -mcmodel=medium -c subs.f
>> gfortran -mcmodel=medium -c xinterface.f
>> gfortran -mcmodel=medium -c locglob.f
>> gfortran -mcmodel=medium -c postnek5a.f
>> gfortran -mcmodel=medium -c ../../nek/3rd_party/blas.f
>> gfortran: ../../nek/3rd_party/blas.f: No such file or directory
>> gfortran: no input files
>> make[1]: *** [blas.o] Error 1
>> make[1]: Leaving directory `/home/user/Nek5000-master/tools/postnek'
>> make: *** [all] Error 1
>> ###########gcc and gfortran details for server##########
>> [user at rhel64 tools]$ rpm -qa | grep gcc
>> gcc-4.4.7-3.el6.x86_64
>> compat-gcc-34-3.4.6-19.el6.x86_64
>> gcc-gfortran-4.4.7-3.el6.x86_64
>> libgcc-4.4.7-3.el6.i686
>> gcc-c-4.4.7-3.el6.x86_64
>> libgcc-4.4.7-3.el6.x86_64
>> [user at rhel64 tools]$ rpm -qa | grep gfortran
>> gcc-gfortran-4.4.7-3.el6.x86_64
>> libgfortran-4.4.7-3.el6.x86_64
>> compat-libgfortran-41-4.1.2-39.el6.x86_64
>> Richard B Powell
>> Technical Architect II
>> Operations/Server Engineering
>> AREVA, Inc.
>> 3315 Old Forest Road OF-60
>> Lynchburg, VA 24501
>> Phone: 1 434-832-3894
>> Fax: 1 434-382-3894
>> _______________________________________________
>> Nek5000-users mailing list
>> Nek5000-users at lists.mcs.anl.gov
>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
> _______________________________________________
> Nek5000-users mailing list
> Nek5000-users at lists.mcs.anl.gov
> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/nek5000-users/attachments/20161214/d55c1a91/attachment-0001.html>
More information about the Nek5000-users
mailing list