[Nek5000-users] Running MOAB example
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Thu Sep 12 13:43:25 CDT 2013
Hi All,
After fixing MOAB, I successully compiled MOAB example but when I tried
./nek pipe, it gave me this error
mv: cannot stat `pipe.log': No such file or directory
./nek5000: error while loading shared libraries: libhdf5.so.8: cannot open
shared object file: No such file or directory
real 0m0.001s
user 0m0.000s
sys 0m0.000s
can any one tell me what is the problem? FYI, I am using hdf5-1.8.11 with
zlib-1.2.5 and szip-2.1.
Thanks,
Ami
On Wed, Sep 11, 2013 at 1:30 PM, <nek5000-users at lists.mcs.anl.gov> wrote:
>
>
> On 09/11/2013 12:10 PM, Iulian Grindeanu wrote:
>
>>
>>
>> ------------------------------**------------------------------**
>> ------------------------------**------------------------------
>>
>>
>> Aha, good catch.
>>
>> Iulian, could you backport the imesh_freememory function? Thanks.
>>
>> Hello,
>> The Version 4.6 was released on February 11. The link to the tar ball is
>> in the web page.
>> http://trac.mcs.anl.gov/**projects/ITAPS/wiki/MOAB<http://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB>
>>
>> http://ftp.mcs.anl.gov/pub/**fathom/moab-4.6.0.tar.gz<http://ftp.mcs.anl.gov/pub/fathom/moab-4.6.0.tar.gz>
>> (so this is the official release 4.6)
>>
>> The current Version4.6 branch, in the git repository, already has the
>> free memory function backported.
>> That tarball is updated nightly, and you can get it from this link (on
>> the moab wiki page too)
>>
>> http://ftp.mcs.anl.gov/pub/**fathom/moab-4.6-nightly.tar.gz<http://ftp.mcs.anl.gov/pub/fathom/moab-4.6-nightly.tar.gz>
>>
>> Is this what they need?
>>
>>
> Ok, yes, that's what they need, thanks.
>
> - tim
>
>
> Thanks,
>> Iulian
>>
>> - tim
>>
>> On 09/11/2013 11:33 AM, Vijay S. Mahadevan wrote:
>> > The linker error is because of your version mismatch. You need to
>> > update your moab to the latest version. I see you are using v4.6
>> now.
>> > You should be able to use the dev version from
>> > https://bitbucket.org/**fathomteam/moab<https://bitbucket.org/fathomteam/moab>with git or download the newer
>> > patch from https://trac.mcs.anl.gov/**projects/ITAPS/wiki/MOAB<https://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB>
>> .
>> >
>> > Tim, can we create a new patched version of the release for
>> download.
>> > I spoke to Rajeev about this some time back but we need to decide
>> what
>> > fixes to backport.
>> >
>> > Vijay
>> >
>> > On Wed, Sep 11, 2013 at 11:20 AM, <nek5000-users at lists.mcs.anl.**
>> gov <nek5000-users at lists.mcs.anl.gov>> wrote:
>> >>
>> >> Yes , I am using gnu, and whwen I add USR_LFLAGS="-lmpi_cxx
>> -lstdc++,
>> >> I get this,
>> >> makenek - automatic build tool for Nek5000
>> >> generating makefile ...
>> >> mpif77 -c -O2 -fdefault-real-8 -x f77-cpp-input -fcray-pointer
>> -DMOAB
>> >> -DPTRSIZE8 -DMPI -DLONGINT8 -DUNDERSCORE -DGLOBAL_LONG_LONG
>> >> -I/home/amirreza/nek5_svn/**amirreza_test/examples/moab
>> >> -I/home/amirreza/nek5_svn/**trunk/nek -I./
>> >> /home/amirreza/nek5_svn/**amirreza_test/examples/moab/**pipe.f
>> >> -I/home/amirreza/nek5_svn/**trunk/nek/3rd_party
>> >> -I/home/amirreza/Amirreza/**moab-4.6.0/gcc/include -o obj/pipe.o
>> >> mpif77 -o nek5000 obj/pipe.o obj/drive.o obj/drive1.o
>> obj/drive2.o
>> >> obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o
>> >> obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o
>> >> obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o
>> >> obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o
>> >> obj/turb.o obj/mvmesh.o obj/ic.o obj/ssolv.o obj/planx.o
>> obj/math.o
>> >> obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o
>> >> obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o
>> obj/hsmg.o
>> >> obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o
>> obj/navier6.o
>> >> obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o
>> obj/byte.o
>> >> obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/cvode_driver.o
>> >> obj/nek_comm.o obj/init_plugin.o obj/setprop.o obj/qthermal.o
>> >> obj/cvode_aux.o obj/makeq_aux.o obj/papi.o obj/ssygv.o obj/dsygv.o
>> >> obj/nek_in_situ.o obj/mxm_std.o obj/blas.o obj/moab.o
>> obj/imeshutil.o
>> >> obj/imeshcutil.o obj/comm_mpi.o obj/singlmesh.o obj/jl_gs.o
>> obj/jl_sort.o
>> >> obj/jl_sarray_transfer.o obj/jl_sarray_sort.o obj/jl_gs_local.o
>> >> obj/jl_crystal.o obj/jl_comm.o obj/jl_tensor.o obj/jl_fail.o
>> >> obj/jl_fcrystal.o obj/jl_findpts.o obj/jl_findpts_local.o
>> obj/jl_obbox.o
>> >> obj/jl_poly.o obj/jl_lob_bnd.o obj/jl_findpts_el_3.o
>> obj/jl_findpts_el_2.o
>> >> obj/jl_sparse_cholesky.o obj/jl_xxt.o obj/jl_fcrs.o
>> >> -L/home/amirreza/Amirreza/**netcdf-4.1.3/gcc/lib
>> >> -L/home/amirreza/Amirreza/**zlib-1.2.5/gcc/lib
>> >> -L/home/amirreza/Amirreza/**szip-2.1/gcc/lib
>> >> -L/home/amirreza/Amirreza/**hdf5-1.8.11/lib
>> >> -L/home/amirreza/Amirreza/**moab-4.6.0/gcc/lib
>> >> -L/home/amirreza/Amirreza/**moab-4.6.0/gcc/lib -liMesh -lMOAB
>> -lnetcdf -lhdf5
>> >> -lsz -lm -lmpi_cxx -lstdc++
>> >> obj/moab.o: In function `nekmoab_intbc_':
>> >> moab.f:(.text+0xe9d): undefined reference to `imesh_freememory_'
>> >> moab.f:(.text+0xece): undefined reference to `imesh_freememory_'
>> >> moab.f:(.text+0xee4): undefined reference to `imesh_freememory_'
>> >> moab.f:(.text+0xf05): undefined reference to `imesh_freememory_'
>> >> obj/moab.o: In function `nekmoab_bc_':
>> >> moab.f:(.text+0x1306): undefined reference to `imesh_freememory_'
>> >>
>> >> collect2: ld returned 1 exit status
>> >> make: *** [nek5000] Error 1
>> >>
>> >> Thanks,
>> >> Ami
>> >>
>> >>
>> >> On Wed, Sep 11, 2013 at 12:05 PM, <nek5000-users at lists.mcs.anl.**
>> gov <nek5000-users at lists.mcs.anl.gov>> wrote:
>> >>>
>> >>> It depends which compiler you're using. Are you using gnu?
>> >>>
>> >>> Please send complete compile output.
>> >>>
>> >>> - tim
>> >>>
>> >>>
>> >>> On 09/11/2013 10:11 AM, nek5000-users at lists.mcs.anl.**gov<nek5000-users at lists.mcs.anl.gov>wrote:
>> >>>>
>> >>>> Thanks for your answer, to make sure I have added libraries to
>> makenek
>> >>>> ''USR_LFLAGS="-lmpi_cxx -lstdc++" which I'm
>> >>>> getting same error,so you mean I need to add appropriate
>> fortran library
>> >>>> to USR_LFLAGS?
>> >>>>
>> >>>> Thanks,
>> >>>> Ami
>> >>>>
>> >>>>
>> >>>> On Wed, Sep 11, 2013 at 10:47 AM, <nek5000-users at lists.mcs.anl.
>> **gov <nek5000-users at lists.mcs.anl.gov>
>> >>>> <mailto:nek5000-users at lists.**mcs.anl.gov<nek5000-users at lists.mcs.anl.gov>>>
>> wrote:
>> >>>>
>> >>>> Hi Ami,
>> >>>> That's the C++ runtime. You have two options:
>> >>>> 1. Link with the C++ compiler; in this case, you'll have to
>> >>>> explicitly add the fortran runtime libraries to the link
>> >>>> statement, which is most easily done by adding it to
>> USR_LFLAGS in
>> >>>> makenek. Compiler documents often tell you which
>> >>>> libraries implement the fortran runtime, usually in a
>> section about
>> >>>> inter-language linking.
>> >>>>
>> >>>> 2. Add the C++ std libs to USR_LFLAGS. The
>> trunk/nek/makenek file
>> >>>> has a few examples of this method for
>> >>>> gnu/intel/pgi. Sometimes, like on BG/x, it can be
>> difficult to
>> >>>> figure out what all comprises the C++ runtime, which
>> >>>> is why I list 1. above.
>> >>>>
>> >>>> - tim
>> >>>>
>> >>>>
>> >>>> On 09/11/2013 09:31 AM, nek5000-users at lists.mcs.anl.__**
>> gov
>> >>>> <mailto:nek5000-users at lists.**mcs.anl.gov<nek5000-users at lists.mcs.anl.gov>>
>> wrote:
>> >>>>
>> >>>> Hello Neks,
>> >>>>
>> >>>> I am trying to run MOAB example with nek5000, but all
>> the time
>> >>>> which I am running, it gives me set of undefined
>> >>>> reference error. I put an error with last part of my
>> ./makenek
>> >>>> pipe log below.
>> >>>> What is wrong with my work?
>> >>>>
>> >>>> IODebugTrack.cpp:(.text+0xb74)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> IODebugTrack.cpp:(.text+0xb7f)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(unsigned long)'
>> >>>> IODebugTrack.cpp:(.text+0xb8c)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> IODebugTrack.cpp:(.text+0xb97)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(unsigned long)'
>> >>>> IODebugTrack.cpp:(.text+0xbd3)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> IODebugTrack.cpp:(.text+0xbde)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(unsigned long)'
>> >>>> IODebugTrack.cpp:(.text+0xbeb)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> IODebugTrack.cpp:(.text+0xbf6)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(unsigned long)'
>> >>>> IODebugTrack.cpp:(.text+0xc03)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> IODebugTrack.cpp:(.text+0xc0e)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(unsigned long)'
>> >>>> IODebugTrack.cpp:(.text+0xc1b)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> IODebugTrack.cpp:(.text+0xc26)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(unsigned long)'
>> >>>> IODebugTrack.cpp:(.text+0xc33)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> IODebugTrack.cpp:(.text+0xc38)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>>
>> >>>> std::endl<char, std::char_traits<char>
>> >(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&)'
>> >>>> IODebugTrack.cpp:(.text+0xc40)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(std::basic___**ostream<char,
>> std::char_traits<char>
>> >>>>> & (*)(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&))'
>> >>>> IODebugTrack.cpp:(.text+0xc50)**__: undefined
>> reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::flush()'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**IODebugTrack.o):
>> In
>> >>>> function
>> >>>> `moab::IODebugTrack::all___**reduce()':
>> >>>> IODebugTrack.cpp:(.text+0xd08)**__: undefined
>> reference to
>> >>>> `MPI_Comm_size'
>> >>>> IODebugTrack.cpp:(.text+0xdfe)**__: undefined
>> reference to
>> >>>> `MPI_Gather'
>> >>>> IODebugTrack.cpp:(.text+__**0x1080): undefined
>> reference to
>> >>>> `MPI_Gatherv'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**IODebugTrack.o):
>> In
>> >>>> function
>> >>>> `__static_initialization_and__**_destruction_0(int,
>> int)':
>> >>>> IODebugTrack.cpp:(.text+__**0x1221): undefined
>> reference to
>> >>>> `std::ios_base::Init::Init()'
>> >>>> IODebugTrack.cpp:(.text+__**0x1226): undefined
>> reference to
>> >>>> `std::ios_base::Init::~Init()'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**IODebugTrack.o):
>> In
>> >>>> function
>> >>>> `std::list<moab::IODebugTrack:**__:DRange,
>> >>>> std::allocator<moab::__**IODebugTrack::DRange>
>> >>>>> ::_M_insert(std::_List___**iterator<moab::IODebugTrack::_**
>> _DRange>,
>> >>>> moab::IODebugTrack::DRange const&)':
>> >>>>
>> >>>>
>> IODebugTrack.cpp:(.text.___**ZNSt4listIN4moab12IODebugTrack**
>> __6DRangeESaIS2_EE9_M___**insertESt14_List_iteratorIS2__**
>> _ERKS2_[std::list<moab::__**IODebugTrack::DRange,
>> >>>> std::allocator<moab::__**IODebugTrack::DRange>
>> >>>>> ::_M_insert(std::_List___**iterator<moab::IODebugTrack::_**
>> _DRange>,
>> >>>>
>> >>>> moab::IODebugTrack::DRange const&)]+0x3a): undefined
>> reference to
>> >>>>
>> >>>> `std::__detail::_List_node___**base::_M_hook(std::__detail::_**
>> __List_node_base*)'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**IODebugTrack.o):
>> In
>> >>>> function
>> >>>>
>> >>>> `__gnu_cxx::new_allocator<std:**__:_List_node<moab::__**
>> IODebugTrack::DRange>
>> >>>> >::deallocate(std::_List_node<**
>> __moab::IODebugTrack::DRange>***,
>> >>>> unsigned long)':
>> >>>>
>> >>>>
>> IODebugTrack.cpp:(.text._ZN9__**__gnu_cxx13new_allocatorISt10_**
>> __List___**nodeIN4moab12IODebugTrack6DRan**__geEEE10deallocateEPS5_m[__**
>> gnu___cxx::new_allocator<std::**_List___node<moab::**
>> IODebugTrack::__DRange>
>> >>>> >::deallocate(std::_List_node<**
>> __moab::IODebugTrack::DRange>***,
>> >>>> unsigned long)]+0x1c): undefined reference to
>> >>>> `operator
>> >>>> delete(void*)'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**IODebugTrack.o):
>> In
>> >>>> function
>> >>>>
>> >>>> `__gnu_cxx::new_allocator<__**moab::IODebugTrack::DRange>::_**
>> _allocate(unsigned
>> >>>> long, void const*)':
>> >>>>
>> >>>>
>> IODebugTrack.cpp:(.text._ZN9__**__gnu_cxx13new___**
>> allocatorIN4moab12IODebugTrack**__6DRangeEE8allocateEmPKv[__**
>> gnu___cxx::new_allocator<moab:**:__IODebugTrack::DRange>::__**
>> allocate(unsigned
>> >>>>
>> >>>> long, void const*)]+0x2c): undefined reference to
>> >>>> `std::__throw_bad_alloc()'
>> >>>>
>> >>>>
>> IODebugTrack.cpp:(.text._ZN9__**__gnu_cxx13new___**
>> allocatorIN4moab12IODebugTrack**__6DRangeEE8allocateEmPKv[__**
>> gnu___cxx::new_allocator<moab:**:__IODebugTrack::DRange>::__**
>> allocate(unsigned
>> >>>>
>> >>>> long, void const*)]+0x45): undefined reference to
>> `operator
>> >>>> new(unsigned long)'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**IODebugTrack.o):
>> In
>> >>>> function
>> >>>>
>> >>>> `__gnu_cxx::new_allocator<__**moab::IODebugTrack::DRange>::_**
>> _deallocate(moab::**IODebugTrack:__:DRange*,
>> >>>> unsigned
>> >>>> long)':
>> >>>>
>> >>>>
>> IODebugTrack.cpp:(.text._ZN9__**__gnu_cxx13new___**
>> allocatorIN4moab12IODebugTrack**__6DRangeEE10deallocateEPS3_m[**
>> ____gnu_cxx::new_allocator<**moab::__IODebugTrack::DRange>:**
>> :__deallocate(moab::**IODebugTrack:__:DRange*,
>> >>>>
>> >>>> unsigned long)]+0x1c): undefined reference to `operator
>> >>>> delete(void*)'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**IODebugTrack.o):
>> In
>> >>>> function
>> >>>>
>> >>>> `__gnu_cxx::new_allocator<std:**__:_List_node<moab::__**
>> IODebugTrack::DRange>
>> >>>>> ::allocate(unsigned long, void const*)':
>> >>>>
>> >>>>
>> IODebugTrack.cpp:(.text._ZN9__**__gnu_cxx13new_allocatorISt10_**
>> __List___**nodeIN4moab12IODebugTrack6DRan**__geEEE8allocateEmPKv[__gnu_**
>> cxx:__:new_allocator<std::_**List___node<moab::**IODebugTrack::__DRange>
>> >>>>
>> >>>> >::allocate(unsigned long, void const*)]+0x2c):
>> undefined
>> >>>> reference to `std::__throw_bad_alloc()'
>> >>>>
>> >>>>
>> IODebugTrack.cpp:(.text._ZN9__**__gnu_cxx13new_allocatorISt10_**
>> __List___**nodeIN4moab12IODebugTrack6DRan**__geEEE8allocateEmPKv[__gnu_**
>> cxx:__:new_allocator<std::_**List___node<moab::**IODebugTrack::__DRange>
>> >>>>
>> >>>> >::allocate(unsigned long, void const*)]+0x46):
>> undefined
>> >>>> reference to `operator new(unsigned long)'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**
>> IODebugTrack.o):(.eh_frame+__**0x24b):
>> >>>> undefined reference to
>> >>>> `__gxx_personality_v0'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**OrientedBox.o):
>> In
>> >>>> function
>> >>>> `moab::operator<<(std::basic__**_ostream<char,
>> >>>> std::char_traits<char> >&, moab::OrientedBox const&)':
>> >>>>
>> >>>> OrientedBox.cpp:(.text+0x97): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>> std::operator<<
>> >>>> <std::char_traits<char> >(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&, char const*)'
>> >>>> OrientedBox.cpp:(.text+0xaf): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>> std::operator<<
>> >>>> <std::char_traits<char> >(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&, char const*)'
>> >>>> OrientedBox.cpp:(.text+0xbc): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(double)'
>> >>>> OrientedBox.cpp:(.text+0xc9): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>> std::operator<<
>> >>>> <std::char_traits<char> >(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&, char const*)'
>> >>>> OrientedBox.cpp:(.text+0xe1): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>> std::operator<<
>> >>>> <std::char_traits<char> >(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&, char const*)'
>> >>>> OrientedBox.cpp:(.text+0xee): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(double)'
>> >>>> OrientedBox.cpp:(.text+0xfb): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>> std::operator<<
>> >>>> <std::char_traits<char> >(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&, char const*)'
>> >>>> OrientedBox.cpp:(.text+0x113): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char> >&
>> >>>> std::operator<< <std::char_traits<char>
>> >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char
>> const*)'
>> >>>> OrientedBox.cpp:(.text+0x120): undefined reference to
>> >>>> `std::basic_ostream<char, std::char_traits<char>
>> >>>> >::operator<<(double)'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**OrientedBox.o):
>> In
>> >>>> function
>> >>>> `__static_initialization_and__**_destruction_0(int,
>> int)':
>> >>>> OrientedBox.cpp:(.text+0x3aaf)**__: undefined
>> reference to
>> >>>> `std::ios_base::Init::Init()'
>> >>>> OrientedBox.cpp:(.text+0x3ab4)**__: undefined
>> reference to
>> >>>> `std::ios_base::Init::~Init()'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**OrientedBox.o):
>> In
>> >>>> function `moab::ErrorCode
>> >>>> moab::EigenDecomp<moab::__**Matrix3,
>> moab::CartVect>(moab::Matrix3
>> >>>> const&, double*, moab::CartVect*)':
>> >>>>
>> >>>>
>> OrientedBox.cpp:(.text.___**ZN4moab11EigenDecompINS___**
>> 7Matrix3ENS_8CartVectEEENS___**9ErrorCodeERKT_PdPT0_[moab::__**ErrorCode
>> >>>> moab::EigenDecomp<moab::__**Matrix3,
>> moab::CartVect>(moab::Matrix3
>> >>>> const&, double*, moab::CartVect*)]+0xb7f):
>> >>>>
>> >>>> undefined
>> >>>> reference to `std::cerr'
>> >>>>
>> >>>>
>> OrientedBox.cpp:(.text.___**ZN4moab11EigenDecompINS___**
>> 7Matrix3ENS_8CartVectEEENS___**9ErrorCodeERKT_PdPT0_[moab::__**ErrorCode
>> >>>> moab::EigenDecomp<moab::__**Matrix3,
>> moab::CartVect>(moab::Matrix3
>> >>>> const&, double*, moab::CartVect*)]+0xb84):
>> >>>>
>> >>>> undefined
>> >>>> reference to `std::basic_ostream<char,
>> std::char_traits<char> >&
>> >>>> std::operator<< <std::char_traits<char>
>> >>>> >(std::basic_ostream<char, std::char_traits<char>
>> >&, char
>> >>>> const*)'
>> >>>>
>> >>>>
>> OrientedBox.cpp:(.text.___**ZN4moab11EigenDecompINS___**
>> 7Matrix3ENS_8CartVectEEENS___**9ErrorCodeERKT_PdPT0_[moab::__**ErrorCode
>> >>>> moab::EigenDecomp<moab::__**Matrix3,
>> moab::CartVect>(moab::Matrix3
>> >>>> const&, double*, moab::CartVect*)]+0xb89):
>> >>>>
>> >>>> undefined
>> >>>> reference to `std::basic_ostream<char,
>> std::char_traits<char> >&
>> >>>> std::endl<char, std::char_traits<char>
>> >>>> >(std::basic_ostream<char, std::char_traits<char>
>> >&)'
>> >>>>
>> >>>>
>> OrientedBox.cpp:(.text.___**ZN4moab11EigenDecompINS___**
>> 7Matrix3ENS_8CartVectEEENS___**9ErrorCodeERKT_PdPT0_[moab::__**ErrorCode
>> >>>> moab::EigenDecomp<moab::__**Matrix3,
>> moab::CartVect>(moab::Matrix3
>> >>>> const&, double*, moab::CartVect*)]+0xb91):
>> >>>> undefined
>> >>>> reference to `std::basic_ostream<char,
>> std::char_traits<char>
>> >>>>> ::operator<<(std::basic___**ostream<char,
>> >>>>
>> >>>> std::char_traits<char> >& (*)(std::basic_ostream<char,
>> >>>> std::char_traits<char> >&))'
>> >>>>
>> >>>> /home/amirreza/Amirreza/moab-_**_4.6.0/gcc/lib/libMOAB.a(__**
>> OrientedBox.o):(.eh_frame+__**0x22f):
>> >>>> undefined reference to
>> >>>>
>> >>>> `__gxx_personality_v0'
>> >>>> collect2: ld returned 1 exit status
>> >>>> make: *** [nek5000] Error 1
>> >>>>
>> >>>> Thanks,
>> >>>> Ami
>> >>>>
>> >>>>
>> >>>> ______________________________**___________________
>> >>>> Nek5000-users mailing list
>> >>>> Nek5000-users at lists.mcs.anl.__**gov
>> >>>> <mailto:Nek5000-users at lists.**mcs.anl.gov<Nek5000-users at lists.mcs.anl.gov>
>> >
>> >>>> https://lists.mcs.anl.gov/__**
>> mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users>
>> >>>> <https://lists.mcs.anl.gov/**
>> mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>> **>
>> >>>>
>> >>>>
>> >>>> --
>> >>>> ==============================**
>> __============================**==__====
>> >>>>
>> >>>> "You will keep in perfect peace him whose mind is
>> >>>> steadfast, because he trusts in you."
>> Isaiah 26:3
>> >>>>
>> >>>> Tim Tautges Argonne National
>> Laboratory
>> >>>> (tautges at mcs.anl.gov <mailto:tautges at mcs.anl.gov
>> >)
>> >>>> (telecommuting from UW-Madison)
>> >>>> phone (gvoice): (608) 354-1459<tel:%28608%29%20354-1459> 1500
>> >>>> Engineering Dr.
>> >>>> fax: (608) 263-4499<tel:%28608%29%20263-4499>
>> >>>> Madison, WI 53706
>> >>>>
>> >>>> ______________________________**___________________
>> >>>> Nek5000-users mailing list
>> >>>> Nek5000-users at lists.mcs.anl.__**gov
>> >>>> <mailto:Nek5000-users at lists.**mcs.anl.gov<Nek5000-users at lists.mcs.anl.gov>
>> >
>> >>>> https://lists.mcs.anl.gov/__**
>> mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users>
>> >>>> <https://lists.mcs.anl.gov/**mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>> **>
>> >>>>
>> >>>>
>> >>>>
>> >>>>
>> >>>>
>> >>>> ______________________________**_________________
>> >>>> Nek5000-users mailing list
>> >>>> Nek5000-users at lists.mcs.anl.**gov<Nek5000-users at lists.mcs.anl.gov>
>> >>>> https://lists.mcs.anl.gov/**mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>> >>>>
>> >>>
>> >>> --
>> >>> ==============================**==============================**
>> ====
>> >>> "You will keep in perfect peace him whose mind is
>> >>> steadfast, because he trusts in you." Isaiah
>> 26:3
>> >>>
>> >>> Tim Tautges Argonne National Laboratory
>> >>> (tautges at mcs.anl.gov) (telecommuting from
>> UW-Madison)
>> >>> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
>> >>> fax: (608) 263-4499 Madison, WI 53706
>> >>>
>> >>> ______________________________**_________________
>> >>> Nek5000-users mailing list
>> >>> Nek5000-users at lists.mcs.anl.**gov<Nek5000-users at lists.mcs.anl.gov>
>> >>> https://lists.mcs.anl.gov/**mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>> >>
>> >>
>> >>
>> >> ______________________________**_________________
>> >> Nek5000-users mailing list
>> >> Nek5000-users at lists.mcs.anl.**gov<Nek5000-users at lists.mcs.anl.gov>
>> >> https://lists.mcs.anl.gov/**mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>> >>
>> >
>>
>> --
>> ==============================**==============================**====
>> "You will keep in perfect peace him whose mind is
>> steadfast, because he trusts in you." Isaiah 26:3
>>
>> Tim Tautges Argonne National Laboratory
>> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
>> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
>> fax: (608) 263-4499 Madison, WI 53706
>>
>>
>>
> --
> ==============================**==============================**====
> "You will keep in perfect peace him whose mind is
> steadfast, because he trusts in you." Isaiah 26:3
>
> Tim Tautges Argonne National Laboratory
> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
> fax: (608) 263-4499 Madison, WI 53706
>
> ______________________________**_________________
> Nek5000-users mailing list
> Nek5000-users at lists.mcs.anl.**gov <Nek5000-users at lists.mcs.anl.gov>
> https://lists.mcs.anl.gov/**mailman/listinfo/nek5000-users<https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>
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