[Nek5000-users] Running MOAB example
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Wed Sep 11 12:17:40 CDT 2013
> http://ftp.mcs.anl.gov/pub/fathom/moab-4.6-nightly.tar.gz
>
> Is this what they need?
Yes. But can you also replace the link to moab-4.6.0.tar.gz with the
nightly and rename with a patch number like: 4.6.1. That should give
better tractability for future version related queries.
Vijay
On Wed, Sep 11, 2013 at 12:10 PM, Iulian Grindeanu <iulian at mcs.anl.gov> wrote:
>
>
> ________________________________
>
> Aha, good catch.
>
> Iulian, could you backport the imesh_freememory function? Thanks.
>
> Hello,
> The Version 4.6 was released on February 11. The link to the tar ball is in
> the web page.
> http://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB
>
> http://ftp.mcs.anl.gov/pub/fathom/moab-4.6.0.tar.gz
> (so this is the official release 4.6)
>
> The current Version4.6 branch, in the git repository, already has the free
> memory function backported.
> That tarball is updated nightly, and you can get it from this link (on the
> moab wiki page too)
>
> http://ftp.mcs.anl.gov/pub/fathom/moab-4.6-nightly.tar.gz
>
> Is this what they need?
>
> Thanks,
> Iulian
>
>
>
> - tim
>
> On 09/11/2013 11:33 AM, Vijay S. Mahadevan wrote:
>> The linker error is because of your version mismatch. You need to
>> update your moab to the latest version. I see you are using v4.6 now.
>> You should be able to use the dev version from
>> https://bitbucket.org/fathomteam/moab with git or download the newer
>> patch from https://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB.
>>
>> Tim, can we create a new patched version of the release for download.
>> I spoke to Rajeev about this some time back but we need to decide what
>> fixes to backport.
>>
>> Vijay
>>
>> On Wed, Sep 11, 2013 at 11:20 AM, <nek5000-users at lists.mcs.anl.gov>
>> wrote:
>>>
>>> Yes , I am using gnu, and whwen I add USR_LFLAGS="-lmpi_cxx -lstdc++,
>>> I get this,
>>> makenek - automatic build tool for Nek5000
>>> generating makefile ...
>>> mpif77 -c -O2 -fdefault-real-8 -x f77-cpp-input -fcray-pointer -DMOAB
>>> -DPTRSIZE8 -DMPI -DLONGINT8 -DUNDERSCORE -DGLOBAL_LONG_LONG
>>> -I/home/amirreza/nek5_svn/amirreza_test/examples/moab
>>> -I/home/amirreza/nek5_svn/trunk/nek -I./
>>> /home/amirreza/nek5_svn/amirreza_test/examples/moab/pipe.f
>>> -I/home/amirreza/nek5_svn/trunk/nek/3rd_party
>>> -I/home/amirreza/Amirreza/moab-4.6.0/gcc/include -o obj/pipe.o
>>> mpif77 -o nek5000 obj/pipe.o obj/drive.o obj/drive1.o obj/drive2.o
>>> obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o
>>> obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o
>>> obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o
>>> obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o
>>> obj/turb.o obj/mvmesh.o obj/ic.o obj/ssolv.o obj/planx.o obj/math.o
>>> obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o
>>> obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o
>>> obj/hsmg.o
>>> obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o obj/navier6.o
>>> obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o
>>> obj/byte.o
>>> obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/cvode_driver.o
>>> obj/nek_comm.o obj/init_plugin.o obj/setprop.o obj/qthermal.o
>>> obj/cvode_aux.o obj/makeq_aux.o obj/papi.o obj/ssygv.o obj/dsygv.o
>>> obj/nek_in_situ.o obj/mxm_std.o obj/blas.o obj/moab.o obj/imeshutil.o
>>> obj/imeshcutil.o obj/comm_mpi.o obj/singlmesh.o obj/jl_gs.o obj/jl_sort.o
>>> obj/jl_sarray_transfer.o obj/jl_sarray_sort.o obj/jl_gs_local.o
>>> obj/jl_crystal.o obj/jl_comm.o obj/jl_tensor.o obj/jl_fail.o
>>> obj/jl_fcrystal.o obj/jl_findpts.o obj/jl_findpts_local.o obj/jl_obbox.o
>>> obj/jl_poly.o obj/jl_lob_bnd.o obj/jl_findpts_el_3.o
>>> obj/jl_findpts_el_2.o
>>> obj/jl_sparse_cholesky.o obj/jl_xxt.o obj/jl_fcrs.o
>>> -L/home/amirreza/Amirreza/netcdf-4.1.3/gcc/lib
>>> -L/home/amirreza/Amirreza/zlib-1.2.5/gcc/lib
>>> -L/home/amirreza/Amirreza/szip-2.1/gcc/lib
>>> -L/home/amirreza/Amirreza/hdf5-1.8.11/lib
>>> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib
>>> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib -liMesh -lMOAB -lnetcdf
>>> -lhdf5
>>> -lsz -lm -lmpi_cxx -lstdc++
>>> obj/moab.o: In function `nekmoab_intbc_':
>>> moab.f:(.text+0xe9d): undefined reference to `imesh_freememory_'
>>> moab.f:(.text+0xece): undefined reference to `imesh_freememory_'
>>> moab.f:(.text+0xee4): undefined reference to `imesh_freememory_'
>>> moab.f:(.text+0xf05): undefined reference to `imesh_freememory_'
>>> obj/moab.o: In function `nekmoab_bc_':
>>> moab.f:(.text+0x1306): undefined reference to `imesh_freememory_'
>>>
>>> collect2: ld returned 1 exit status
>>> make: *** [nek5000] Error 1
>>>
>>> Thanks,
>>> Ami
>>>
>>>
>>> On Wed, Sep 11, 2013 at 12:05 PM, <nek5000-users at lists.mcs.anl.gov>
>>> wrote:
>>>>
>>>> It depends which compiler you're using. Are you using gnu?
>>>>
>>>> Please send complete compile output.
>>>>
>>>> - tim
>>>>
>>>>
>>>> On 09/11/2013 10:11 AM, nek5000-users at lists.mcs.anl.gov wrote:
>>>>>
>>>>> Thanks for your answer, to make sure I have added libraries to makenek
>>>>> ''USR_LFLAGS="-lmpi_cxx -lstdc++" which I'm
>>>>> getting same error,so you mean I need to add appropriate fortran
>>>>> library
>>>>> to USR_LFLAGS?
>>>>>
>>>>> Thanks,
>>>>> Ami
>>>>>
>>>>>
>>>>> On Wed, Sep 11, 2013 at 10:47 AM, <nek5000-users at lists.mcs.anl.gov
>>>>> <mailto:nek5000-users at lists.mcs.anl.gov>> wrote:
>>>>>
>>>>> Hi Ami,
>>>>> That's the C++ runtime. You have two options:
>>>>> 1. Link with the C++ compiler; in this case, you'll have to
>>>>> explicitly add the fortran runtime libraries to the link
>>>>> statement, which is most easily done by adding it to USR_LFLAGS in
>>>>> makenek. Compiler documents often tell you which
>>>>> libraries implement the fortran runtime, usually in a section
>>>>> about
>>>>> inter-language linking.
>>>>>
>>>>> 2. Add the C++ std libs to USR_LFLAGS. The trunk/nek/makenek file
>>>>> has a few examples of this method for
>>>>> gnu/intel/pgi. Sometimes, like on BG/x, it can be difficult to
>>>>> figure out what all comprises the C++ runtime, which
>>>>> is why I list 1. above.
>>>>>
>>>>> - tim
>>>>>
>>>>>
>>>>> On 09/11/2013 09:31 AM, nek5000-users at lists.mcs.anl.__gov
>>>>> <mailto:nek5000-users at lists.mcs.anl.gov> wrote:
>>>>>
>>>>> Hello Neks,
>>>>>
>>>>> I am trying to run MOAB example with nek5000, but all the time
>>>>> which I am running, it gives me set of undefined
>>>>> reference error. I put an error with last part of my ./makenek
>>>>> pipe log below.
>>>>> What is wrong with my work?
>>>>>
>>>>> IODebugTrack.cpp:(.text+0xb74)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> IODebugTrack.cpp:(.text+0xb7f)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(unsigned long)'
>>>>> IODebugTrack.cpp:(.text+0xb8c)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> IODebugTrack.cpp:(.text+0xb97)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(unsigned long)'
>>>>> IODebugTrack.cpp:(.text+0xbd3)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> IODebugTrack.cpp:(.text+0xbde)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(unsigned long)'
>>>>> IODebugTrack.cpp:(.text+0xbeb)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> IODebugTrack.cpp:(.text+0xbf6)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(unsigned long)'
>>>>> IODebugTrack.cpp:(.text+0xc03)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> IODebugTrack.cpp:(.text+0xc0e)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(unsigned long)'
>>>>> IODebugTrack.cpp:(.text+0xc1b)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> IODebugTrack.cpp:(.text+0xc26)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(unsigned long)'
>>>>> IODebugTrack.cpp:(.text+0xc33)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> IODebugTrack.cpp:(.text+0xc38)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>>
>>>>> std::endl<char, std::char_traits<char>
>>>>> >(std::basic_ostream<char,
>>>>> std::char_traits<char> >&)'
>>>>> IODebugTrack.cpp:(.text+0xc40)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(std::basic___ostream<char,
>>>>> std::char_traits<char>
>>>>>> & (*)(std::basic_ostream<char,
>>>>> std::char_traits<char> >&))'
>>>>> IODebugTrack.cpp:(.text+0xc50)__: undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::flush()'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>>>>> function
>>>>> `moab::IODebugTrack::all___reduce()':
>>>>> IODebugTrack.cpp:(.text+0xd08)__: undefined reference to
>>>>> `MPI_Comm_size'
>>>>> IODebugTrack.cpp:(.text+0xdfe)__: undefined reference to
>>>>> `MPI_Gather'
>>>>> IODebugTrack.cpp:(.text+__0x1080): undefined reference to
>>>>> `MPI_Gatherv'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>>>>> function
>>>>> `__static_initialization_and___destruction_0(int, int)':
>>>>> IODebugTrack.cpp:(.text+__0x1221): undefined reference to
>>>>> `std::ios_base::Init::Init()'
>>>>> IODebugTrack.cpp:(.text+__0x1226): undefined reference to
>>>>> `std::ios_base::Init::~Init()'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>>>>> function
>>>>> `std::list<moab::IODebugTrack:__:DRange,
>>>>> std::allocator<moab::__IODebugTrack::DRange>
>>>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
>>>>> moab::IODebugTrack::DRange const&)':
>>>>>
>>>>>
>>>>> IODebugTrack.cpp:(.text.___ZNSt4listIN4moab12IODebugTrack__6DRangeESaIS2_EE9_M___insertESt14_List_iteratorIS2___ERKS2_[std::list<moab::__IODebugTrack::DRange,
>>>>> std::allocator<moab::__IODebugTrack::DRange>
>>>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
>>>>>
>>>>> moab::IODebugTrack::DRange const&)]+0x3a): undefined reference
>>>>> to
>>>>>
>>>>>
>>>>> `std::__detail::_List_node___base::_M_hook(std::__detail::___List_node_base*)'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>>>>> function
>>>>>
>>>>>
>>>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
>>>>>
>>>>> >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
>>>>> unsigned long)':
>>>>>
>>>>>
>>>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE10deallocateEPS5_m[__gnu___cxx::new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
>>>>>
>>>>> >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
>>>>> unsigned long)]+0x1c): undefined reference to
>>>>> `operator
>>>>> delete(void*)'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>>>>> function
>>>>>
>>>>>
>>>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__allocate(unsigned
>>>>> long, void const*)':
>>>>>
>>>>>
>>>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
>>>>>
>>>>> long, void const*)]+0x2c): undefined reference to
>>>>> `std::__throw_bad_alloc()'
>>>>>
>>>>>
>>>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
>>>>>
>>>>> long, void const*)]+0x45): undefined reference to `operator
>>>>> new(unsigned long)'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>>>>> function
>>>>>
>>>>>
>>>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
>>>>> unsigned
>>>>> long)':
>>>>>
>>>>>
>>>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE10deallocateEPS3_m[____gnu_cxx::new_allocator<moab::__IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
>>>>>
>>>>> unsigned long)]+0x1c): undefined reference to `operator
>>>>> delete(void*)'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>>>>> function
>>>>>
>>>>>
>>>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
>>>>>> ::allocate(unsigned long, void const*)':
>>>>>
>>>>>
>>>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
>>>>>
>>>>> >::allocate(unsigned long, void const*)]+0x2c): undefined
>>>>> reference to `std::__throw_bad_alloc()'
>>>>>
>>>>>
>>>>> IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
>>>>>
>>>>> >::allocate(unsigned long, void const*)]+0x46): undefined
>>>>> reference to `operator new(unsigned long)'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):(.eh_frame+__0x24b):
>>>>> undefined reference to
>>>>> `__gxx_personality_v0'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
>>>>> function
>>>>> `moab::operator<<(std::basic___ostream<char,
>>>>> std::char_traits<char> >&, moab::OrientedBox const&)':
>>>>>
>>>>> OrientedBox.cpp:(.text+0x97): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>> std::operator<<
>>>>> <std::char_traits<char> >(std::basic_ostream<char,
>>>>> std::char_traits<char> >&, char const*)'
>>>>> OrientedBox.cpp:(.text+0xaf): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>> std::operator<<
>>>>> <std::char_traits<char> >(std::basic_ostream<char,
>>>>> std::char_traits<char> >&, char const*)'
>>>>> OrientedBox.cpp:(.text+0xbc): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(double)'
>>>>> OrientedBox.cpp:(.text+0xc9): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>> std::operator<<
>>>>> <std::char_traits<char> >(std::basic_ostream<char,
>>>>> std::char_traits<char> >&, char const*)'
>>>>> OrientedBox.cpp:(.text+0xe1): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>> std::operator<<
>>>>> <std::char_traits<char> >(std::basic_ostream<char,
>>>>> std::char_traits<char> >&, char const*)'
>>>>> OrientedBox.cpp:(.text+0xee): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(double)'
>>>>> OrientedBox.cpp:(.text+0xfb): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>> std::operator<<
>>>>> <std::char_traits<char> >(std::basic_ostream<char,
>>>>> std::char_traits<char> >&, char const*)'
>>>>> OrientedBox.cpp:(.text+0x113): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char> >&
>>>>> std::operator<< <std::char_traits<char>
>>>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>>>>> OrientedBox.cpp:(.text+0x120): undefined reference to
>>>>> `std::basic_ostream<char, std::char_traits<char>
>>>>> >::operator<<(double)'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
>>>>> function
>>>>> `__static_initialization_and___destruction_0(int, int)':
>>>>> OrientedBox.cpp:(.text+0x3aaf)__: undefined reference to
>>>>> `std::ios_base::Init::Init()'
>>>>> OrientedBox.cpp:(.text+0x3ab4)__: undefined reference to
>>>>> `std::ios_base::Init::~Init()'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
>>>>> function `moab::ErrorCode
>>>>> moab::EigenDecomp<moab::__Matrix3,
>>>>> moab::CartVect>(moab::Matrix3
>>>>> const&, double*, moab::CartVect*)':
>>>>>
>>>>>
>>>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>>>>> moab::EigenDecomp<moab::__Matrix3,
>>>>> moab::CartVect>(moab::Matrix3
>>>>> const&, double*, moab::CartVect*)]+0xb7f):
>>>>>
>>>>> undefined
>>>>> reference to `std::cerr'
>>>>>
>>>>>
>>>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>>>>> moab::EigenDecomp<moab::__Matrix3,
>>>>> moab::CartVect>(moab::Matrix3
>>>>> const&, double*, moab::CartVect*)]+0xb84):
>>>>>
>>>>> undefined
>>>>> reference to `std::basic_ostream<char, std::char_traits<char>
>>>>> >&
>>>>> std::operator<< <std::char_traits<char>
>>>>> >(std::basic_ostream<char, std::char_traits<char> >&, char
>>>>> const*)'
>>>>>
>>>>>
>>>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>>>>> moab::EigenDecomp<moab::__Matrix3,
>>>>> moab::CartVect>(moab::Matrix3
>>>>> const&, double*, moab::CartVect*)]+0xb89):
>>>>>
>>>>> undefined
>>>>> reference to `std::basic_ostream<char, std::char_traits<char>
>>>>> >&
>>>>> std::endl<char, std::char_traits<char>
>>>>> >(std::basic_ostream<char, std::char_traits<char> >&)'
>>>>>
>>>>>
>>>>> OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>>>>> moab::EigenDecomp<moab::__Matrix3,
>>>>> moab::CartVect>(moab::Matrix3
>>>>> const&, double*, moab::CartVect*)]+0xb91):
>>>>> undefined
>>>>> reference to `std::basic_ostream<char, std::char_traits<char>
>>>>>> ::operator<<(std::basic___ostream<char,
>>>>>
>>>>> std::char_traits<char> >& (*)(std::basic_ostream<char,
>>>>> std::char_traits<char> >&))'
>>>>>
>>>>>
>>>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o):(.eh_frame+__0x22f):
>>>>> undefined reference to
>>>>>
>>>>> `__gxx_personality_v0'
>>>>> collect2: ld returned 1 exit status
>>>>> make: *** [nek5000] Error 1
>>>>>
>>>>> Thanks,
>>>>> Ami
>>>>>
>>>>>
>>>>> _________________________________________________
>>>>> Nek5000-users mailing list
>>>>> Nek5000-users at lists.mcs.anl.__gov
>>>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
>>>>> https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
>>>>> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>>>>>
>>>>>
>>>>> --
>>>>>
>>>>> ==============================__==============================__====
>>>>>
>>>>> "You will keep in perfect peace him whose mind is
>>>>> steadfast, because he trusts in you." Isaiah 26:3
>>>>>
>>>>> Tim Tautges Argonne National Laboratory
>>>>> (tautges at mcs.anl.gov <mailto:tautges at mcs.anl.gov>)
>>>>> (telecommuting from UW-Madison)
>>>>> phone (gvoice): (608) 354-1459 <tel:%28608%29%20354-1459>
>>>>> 1500
>>>>> Engineering Dr.
>>>>> fax: (608) 263-4499 <tel:%28608%29%20263-4499>
>>>>> Madison, WI 53706
>>>>>
>>>>> _________________________________________________
>>>>> Nek5000-users mailing list
>>>>> Nek5000-users at lists.mcs.anl.__gov
>>>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
>>>>> https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
>>>>> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Nek5000-users mailing list
>>>>> Nek5000-users at lists.mcs.anl.gov
>>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>>>>
>>>>
>>>> --
>>>> ================================================================
>>>> "You will keep in perfect peace him whose mind is
>>>> steadfast, because he trusts in you." Isaiah 26:3
>>>>
>>>> Tim Tautges Argonne National Laboratory
>>>> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
>>>> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
>>>> fax: (608) 263-4499 Madison, WI 53706
>>>>
>>>> _______________________________________________
>>>> Nek5000-users mailing list
>>>> Nek5000-users at lists.mcs.anl.gov
>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>>
>>>
>>>
>>> _______________________________________________
>>> Nek5000-users mailing list
>>> Nek5000-users at lists.mcs.anl.gov
>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>>
>>
>
> --
> ================================================================
> "You will keep in perfect peace him whose mind is
> steadfast, because he trusts in you." Isaiah 26:3
>
> Tim Tautges Argonne National Laboratory
> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
> phone (gvoice): (608) 354-1459 1500 Engineering Dr.
> fax: (608) 263-4499 Madison, WI 53706
>
>
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