[Nek5000-users] Error when running the vortex problem

Tue Oct 11 14:58:29 CDT 2011

Can you post your r1854a.usr .
-Stefan

On 10/11/11, nek5000-users at lists.mcs.anl.gov
<nek5000-users at lists.mcs.anl.gov> wrote:
>
> Hi Dong,
>
> which fortran compiler are you using ? (also, which C compiler?)
>
> Paul
>
>
> On Tue, 11 Oct 2011, nek5000-users at lists.mcs.anl.gov wrote:
>
>>
>> PS --
>>
>> It should look like
>>
>>
>>
>> gs_setup: 0 unique labels shared
>> done :: setup h1 coarse grid   6.9365978240966797E-002 sec
>>
>> call usrdat3
>> done :: usrdat3
>>
>> set initial conditions
>> Checking restart options: r1492_n08.fld27 time=0.
>> Reading checkpoint data
>> byte swap: F   6.543210     -2.9312772E+35
>> Read mode:    4.000000000000000 neltr,nxr,nyr,nzr:      140   8   8   8
>>
>>  Restarting from file r1492_n08.fld27
>>  Columns for restart data U,V,W,P,T,S,N:    0   2   3   4   0   0   4
>> Reading           1
>>  Successfully read data from dump number  1.
>>
>>
>>
>>
>> On Tue, 11 Oct 2011, nek5000-users at lists.mcs.anl.gov wrote:
>>
>>> Hi, Paul.
>>> Thanks for the reply.
>>> Yeah. I was compiling the code in the examples/vortex directory. The
>>> difference is that it is the file "r1854a.usr" included, not "r1854.usr".
>>>
>>> But, even in the file "r1854a.usr", the "param(66)=4" is already well
>>> set.
>>> I am still trying to figure out why my run follows a different file
>>> format.
>>> Your further suggestion is very welcome.
>>>
>>> BTW, my platform is Linux/gnu.
>>>
>>> Thanks.
>>> -Dong
>>>
>>>
>>>
>>> -----Original Message-----
>>> From: nek5000-users-bounces at lists.mcs.anl.gov
>>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>>> nek5000-users at lists.mcs.anl.gov
>>> Sent: Tuesday, October 11, 2011 3:03 PM
>>> To: nek5000-users at lists.mcs.anl.gov
>>> Subject: Re: [Nek5000-users] Error when running the vortex problem
>>>
>>>
>>>
>>> Hi Dong,
>>>
>>> For some reason, your run is traversing the .f00000 file format
>>> branch, rather than the .fld input branch.
>>>
>>> This traversal is generally controlled by setting
>>> param(66)=4 (for .fld) in usrdat2 (or usrdat) in the .usr file.
>>>
>>> I'm wondering if you are compiling with r1854.usr provided in
>>> the examples/vortex directory?
>>>
>>> Paul
>>>
>>> On Tue, 11 Oct 2011, nek5000-users at lists.mcs.anl.gov wrote:
>>>
>>>>
>>>> Hi Dong,
>>>>
>>>> What kind of platform are you running on?
>>>>
>>>> Can you do an svn update in the example directory, just in case
>>>> the file was contaminated on transfer?
>>>>
>>>> Paul
>>>>
>>>> On Tue, 11 Oct 2011, nek5000-users at lists.mcs.anl.gov wrote:
>>>>
>>>>> Hi, Stefan.
>>>>> Sure. Attached is the log file.
>>>>>
>>>>> -Dong
>>>>>
>>>>> -----Original Message-----
>>>>> From: nek5000-users-bounces at lists.mcs.anl.gov
>>>>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>>>>> nek5000-users at lists.mcs.anl.gov
>>>>> Sent: Tuesday, October 11, 2011 2:15 PM
>>>>> To: nek5000-users at lists.mcs.anl.gov
>>>>> Subject: Re: [Nek5000-users] Error when running the vortex problem
>>>>>
>>>>> Please post a full log file. Note the file size is limited to 100KB.
>>>>> -Stefan
>>>>>
>>>>> On 10/11/11, S K <stgeke at googlemail.com> wrote:
>>>>>> Hi Dong,
>>>>>>
>>>>>> It works for me. Did you change anything?
>>>>>>
>>>>>> -Stefan
>>>>>>
>>>>>> On 10/11/11, nek5000-users at lists.mcs.anl.gov
>>>>>> <nek5000-users at lists.mcs.anl.gov> wrote:
>>>>>>> Hi,
>>>>>>> I was trying to run nek5000 with vortex, following the default user
>>>>>>> setting.
>>>>>>> There is no problem for building, however when I start to run the
>>>>>>> application, there is an error "NONSTD HDR, parse_hdr, abort". The
>>>>>>> following
>>>>>>> is the related error report.
>>>>>>>
>>>>>>> Reading checkpoint data
>>>>>>>        0       0 OPEN: r1492_n08.fld27
>>>>>>> byte swap: T   0.000000       0.000000
>>>>>>> 140   8   8   8 5.0101000E+0250101 U P                             4
>>>>>>> NELT,NX,N
>>>>>>> ÃºaÃ@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@
>>>>>>>
>>>>>>>                           NONSTD HDR, parse_hdr, abort.
>>>>>>>
>>>>>>> I briefly read the code. It looks like the code is reading the
>>>>>>> checkpoint
>>>>>>> file "r1492_n08.fld27" and there is something wrong with the file
>>>>>>> header.
>>>>>>> The file header does not follow the standard format and the code
>>>>>>> cannot
>>>>>>> understand the file.
>>>>>>>
>>>>>>> How can I solve this problem?
>>>>>>>
>>>>>>> Thank you.
>>>>>>>
>>>>>>> -Dong
>>>>>>>
>>>>>>
>>>>> _______________________________________________
>>>>> Nek5000-users mailing list
>>>>> Nek5000-users at lists.mcs.anl.gov
>>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>>>
>>>
>>>
>>> On Tue, 11 Oct 2011, nek5000-users at lists.mcs.anl.gov wrote:
>>>
>>>> Hi, Stefan.
>>>> Sure. Attached is the log file.
>>>>
>>>> -Dong
>>>>
>>>> -----Original Message-----
>>>> From: nek5000-users-bounces at lists.mcs.anl.gov
>>>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>>>> nek5000-users at lists.mcs.anl.gov
>>>> Sent: Tuesday, October 11, 2011 2:15 PM
>>>> To: nek5000-users at lists.mcs.anl.gov
>>>> Subject: Re: [Nek5000-users] Error when running the vortex problem
>>>>
>>>> Please post a full log file. Note the file size is limited to 100KB.
>>>> -Stefan
>>>>
>>>> On 10/11/11, S K <stgeke at googlemail.com> wrote:
>>>>> Hi Dong,
>>>>>
>>>>> It works for me. Did you change anything?
>>>>>
>>>>> -Stefan
>>>>>
>>>>> On 10/11/11, nek5000-users at lists.mcs.anl.gov
>>>>> <nek5000-users at lists.mcs.anl.gov> wrote:
>>>>>> Hi,
>>>>>> I was trying to run nek5000 with vortex, following the default user
>>>>>> setting.
>>>>>> There is no problem for building, however when I start to run the
>>>>>> application, there is an error "NONSTD HDR, parse_hdr, abort". The
>>>>>> following
>>>>>> is the related error report.
>>>>>>
>>>>>> Reading checkpoint data
>>>>>>        0       0 OPEN: r1492_n08.fld27
>>>>>> byte swap: T   0.000000       0.000000
>>>>>> 140   8   8   8 5.0101000E+0250101 U P                             4
>>>>>> NELT,NX,N
>>>>>> ÃºaÃ@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@@^@^@^@^@^@^@^@^@^@^@^@^@^@^@^@
>>>>>>
>>>>>>                           NONSTD HDR, parse_hdr, abort.
>>>>>>
>>>>>> I briefly read the code. It looks like the code is reading the
>>>>>> checkpoint
>>>>>> file "r1492_n08.fld27" and there is something wrong with the file
>>>>>> header.
>>>>>> The file header does not follow the standard format and the code
>>>>>> cannot
>>>>>> understand the file.
>>>>>>
>>>>>> How can I solve this problem?
>>>>>>
>>>>>> Thank you.
>>>>>>
>>>>>> -Dong
>>>>>>
>>>>>
>>>> _______________________________________________
>>>> Nek5000-users mailing list
>>>> Nek5000-users at lists.mcs.anl.gov
>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>>>
>>> _______________________________________________
>>> Nek5000-users mailing list
>>> Nek5000-users at lists.mcs.anl.gov
>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>