[Nek5000-users] prex segmentation fault

nek5000-users at lists.mcs.anl.gov nek5000-users at lists.mcs.anl.gov
Sat May 15 10:45:53 CDT 2010


Hello all,

I am running into a segmentation fault when using "prex" on my 32 bit
laptop.  This occurs when using both the gfortran and ifort compilers.
More info below, the first is from the Intel compiler, the second from
gfortran.

[root at frank temp4]# uname -a
Linux frank 2.6.23.12-52.fc7 #1 SMP Tue Dec 18 21:18:02 EST 2007 i686
i686 i386 GNU/Linux

[root at frank tools]# gdb prex
GNU gdb Red Hat Linux (6.6-16.fc7rh)
Copyright (C) 2006 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License, and you
are
welcome to change it and/or distribute copies of it under certain
conditions.
Type "show copying" to see the conditions.
There is absolutely no warranty for GDB.  Type "show warranty" for
details.
This GDB was configured as "i386-redhat-linux-gnu"...
(no debugging symbols found)
Using host libthread_db library "/lib/libthread_db.so.1".
(gdb) run
Starting program: /usr/local/programs/nek5000/nek5/trunk/tools/bin/prex 
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
-Adobe-Helvetica-Medium-R-Normal--12-120-75-75-P-67-ISO8859-1

Program received signal SIGSEGV, Segmentation fault.
0x0092c68a in memmove () from /lib/libc.so.6




[root at frank tools]# gdb prex
GNU gdb Red Hat Linux (6.6-16.fc7rh)
Copyright (C) 2006 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License, and you
are
welcome to change it and/or distribute copies of it under certain
conditions.
Type "show copying" to see the conditions.
There is absolutely no warranty for GDB.  Type "show warranty" for
details.
This GDB was configured as "i386-redhat-linux-gnu"...
(no debugging symbols found)
Using host libthread_db library "/lib/libthread_db.so.1".
(gdb) run
Starting program: /usr/local/programs/nek5000/nek5/trunk/tools/bin/prex 
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
-Adobe-Helvetica-Medium-R-Normal--12-120-75-75-P-67-ISO8859-1

Program received signal SIGSEGV, Segmentation fault.
0x0092c68a in memmove () from /lib/libc.so.6
(gdb) where
#0  0x0092c68a in memmove () from /lib/libc.so.6
#1  0x0017994c in _gfortran_copy_string ()
from /usr/lib/libgfortran.so.1
#2  0x0809ddca in data_ ()
#3  0x080494d2 in fprep_ ()
#4  0x080ea1a9 in mainc_ ()
#5  0x080a662b in MAIN__ ()
#6  0x080ea1d7 in main ()
(gdb) 

-- 
Frank Herbert Muldoon, Ph.D. Mechanical Engineering
Technische Universität Wien (Technical University of Vienna)
Inst. f. Strömungsmechanik und Wärmeübertragung (Institute of Fluid
Mechanics and Heat Transfer)
Resselgasse 3
1040 Wien
Tel: +4315880132232
Fax: +4315880132299 
Cell:+436765203470
fmuldoo (skype)
http://tetra.fluid.tuwien.ac.at/fmuldoo/public_html/webpage/frank-muldoon.html




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