[Nek5000-users] nek5000 compilation

[stefanke]

Sorry my mistake.

try again wit:h

#include <stdio.h>
#include <stdlib.h>
#include "jl/fname.h"

#define print_stack FORTRAN_NAME(print_stack, PRINT_STACK)

#if defined __GLIBC__

#include <execinfo.h>
/* Obtain a backtrace and print it to stdout. */
void print_stack(void)
{
  void *bt[50];
  int i;
  int bt_size = backtrace(bt, 50);
  char **symbols = backtrace_symbols(bt, bt_size);

  printf ("backtrace(): obtained %d stack frames.\n", bt_size);
  for (i=0; i<bt_size; i++) printf("%s\n", symbols[i]);
  free (symbols);
}
#else
void print_stack(){};
#endif


Stefan

On Nov 26, 2009, at 6:01 PM, Tamay Ozgokmen wrote:

> It seems to get stuck again (compiler.out attached)
> 
> I replaced nek5_svn/trunk/nek/chelpers.c by what you sent,
> did make clean and ./makenek userfile....
> 
> <compiler.out>
> 
> 
> On Nov 26, 2009, at 11:47 AM, stefanke wrote:
> 
>> Ok it's indeed a non-glibc platform.
>> 
>> Please replace your chelpers.c (source file in the trunk) by
>> 
>> #include <execinfo.h>
>> #include <stdio.h>
>> #include <stdlib.h>
>> #include "jl/fname.h"
>> 
>> #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK)
>> 
>> /* Obtain a backtrace and print it to stdout. */
>> void print_stack(void)
>> {
>> #if defined __GLIBC__
>> void *bt[50];
>> int i;
>> int bt_size = backtrace(bt, 50);
>> char **symbols = backtrace_symbols(bt, bt_size);
>> 
>> printf ("backtrace(): obtained %d stack frames.\n", bt_size);
>> for (i=0; i<bt_size; i++) printf("%s\n", symbols[i]);
>> free (symbols);
>> #endif
>> }
>> 
>> 
>> and try again.
>> 
>> #Stefan
>> 
>> 
>> On Nov 26, 2009, at 5:43 PM, Tamay Ozgokmen wrote:
>> 
>>> 
>>> It is Apple Mac OS X 10.3.9
>>> 
>>> (sysx is based on a bunch of Macs.. strange but it works OK...)
>>> 
>>> On Nov 26, 2009, at 11:40 AM, stefanke wrote:
>>> 
>>>> What's your OS (operating system)?
>>>> 
>>>> 
>>>> On Nov 26, 2009, at 5:25 PM, Tamay Ozgokmen wrote:
>>>> 
>>>>> 
>>>>> Hi Stefan,
>>>>> 
>>>>> I am unable to answer this question since I know nothing about C or glibc :)
>>>>> I also tried with mpicc (instead of mpixlc) with similar results.
>>>>> It supposed to be a system based on Power G4 (similar to IBM P4 and P5) chips with
>>>>> IBM compilers, I am not sure what exactly is installed. The website is (if any use):
>>>>> 
>>>>> http://www.arc.vt.edu/arc/SystemX/
>>>>> 
>>>>> I have been running various versions of nek5000 on this for several years.
>>>>> A makefile that I use to compile an older version of nek500 is attached,
>>>>> if it can provide any clues on how to fix this...
>>>>> 
>>>>> Thanks,
>>>>> Tamay
>>>>> 
>>>>> 
>>>>> <makefile.sysx>
>>>>> 
>>>>> 
>>>>> On Nov 26, 2009, at 11:16 AM, stefanke wrote:
>>>>> 
>>>>>> "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file <execinfo.h> not found.
>>>>>> 
>>>>>> It seems like your running on a non-glibc platform. Right?
>>>>>> 
>>>>>> #Stefan
>>>>>> 
>>>>>> On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote:
>>>>>> 
>>>>>>> 
>>>>>>> Hi,
>>>>>>> 
>>>>>>> I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through
>>>>>>> (compiler.out attached); any suggestions?
>>>>>>> 
>>>>>>> Thanks!
>>>>>>> Tamay
>>>>>>> 
>>>>>>> 
>>>>>>> **********************************************************************************************************
>>>>>>> 
>>>>>>> #!/bin/bash
>>>>>>> #
>>>>>>> # nek5000 build script
>>>>>>> # (c) 2008,2009 UCHICAGO ARGONNE, LLC
>>>>>>> #
>>>>>>> 
>>>>>>> # source path
>>>>>>> SOURCE_ROOT="$HOME/nek5_svn/trunk/nek"
>>>>>>> 
>>>>>>> # plug-in list
>>>>>>> PLUGIN_LIST=""
>>>>>>> 
>>>>>>> # pre-processor symbol list
>>>>>>> PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM
>>>>>>> 
>>>>>>> # Fortran compiler
>>>>>>> F77="mpif77"
>>>>>>> 
>>>>>>> # C compiler
>>>>>>> CC="mpixlc"
>>>>>>> 
>>>>>>> ******************************************************************************************************************
>>>>>>> <compiler.out>
>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>> _______________________________________________
>>>>>>> Nek5000-users mailing list
>>>>>>> Nek5000-users at lists.mcs.anl.gov
>>>>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>>>>> 
>>>>> 
>>>>> *******************************************************************************
>>>>> 
>>>>> Tamay Ozgokmen
>>>>> Associate Professor
>>>>> Division of Meteorology and Physical Oceanography
>>>>> Rosenstiel School of Marine and Atmospheric Science
>>>>> 4600 Rickenbacker Causeway
>>>>> Miami, FL 33149-1098, USA
>>>>> Phone :  305 421 4053
>>>>> Fax      :  305 421 4696
>>>>> Email  :  tozgokmen at rsmas.miami.edu
>>>>> Web : http://www.rsmas.miami.edu/personal/tamay
>>>>> 
>>>> 
>>> 
>>> *******************************************************************************
>>> 
>>> Tamay Ozgokmen
>>> Associate Professor
>>> Division of Meteorology and Physical Oceanography
>>> Rosenstiel School of Marine and Atmospheric Science
>>> 4600 Rickenbacker Causeway
>>> Miami, FL 33149-1098, USA
>>> Phone :  305 421 4053
>>> Fax      :  305 421 4696
>>> Email  :  tozgokmen at rsmas.miami.edu
>>> Web : http://www.rsmas.miami.edu/personal/tamay
>>> 
>> 
> 
> *******************************************************************************
> 
> Tamay Ozgokmen
> Associate Professor
> Division of Meteorology and Physical Oceanography
> Rosenstiel School of Marine and Atmospheric Science
> 4600 Rickenbacker Causeway
> Miami, FL 33149-1098, USA
> Phone :  305 421 4053
> Fax      :  305 421 4696
> Email  :  tozgokmen at rsmas.miami.edu
> Web : http://www.rsmas.miami.edu/personal/tamay
>