Configuring MPICH2 version 1.2.1 with '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' Running on system: CYGWIN_NT-6.1 user-PC 1.7.16(0.262/5/3) 2012-07-20 22:55 i686 Cygwin Executing mpich2prereq in /usr/local/bin/mpich2-1.2.1/src/mpid/ch3 with Executing mpich2prereq in /usr/local/bin/mpich2-1.2.1/src/mpid/ch3/channels/nemesis sourcing /usr/local/bin/mpich2-1.2.1/src/pm/mpd/mpich2prereq sourcing /usr/local/bin/mpich2-1.2.1/src/pm/hydra/mpich2prereq sourcing /usr/local/bin/mpich2-1.2.1/src/pm/gforker/mpich2prereq sourcing /usr/local/bin/mpich2-1.2.1/src/pm/mpd/setup_pm checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking how to run the C preprocessor... cpp-4 checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak does not work outside of a file no checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute ((weak_import)) allowed... yes checking for g77... g77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from g77... -v checking for Fortran 77 libraries of g77... -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lfrtbegin -lg2c -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 checking whether g77 accepts the FLIBS found by autoconf... yes checking whether C can link with -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lfrtbegin -lg2c -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32... yes checking for linker for Fortran main programs... Use Fortran to link programs checking whether Fortran 77 and C objects are compatible... yes checking for Fortran 77 name mangling... lower doubleunderscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking whether Fortran init will work with C... yes checking for f90... no checking for xlf90... no checking for pgf90... no checking for ifort... no checking for epcf90... no checking for f95... no checking for fort... no checking for xlf95... no checking for lf95... no checking for pathf95... no checking for pathf90... no checking for g95... no checking for gfortran... gfortran checking that f works as the extension for Fortran 90 program... yes checking whether we are using the GNU Fortran 90 compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran ) works... yes checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no checking whether Fortran 90 works with Fortran 77... cat: conftest.f90: No such file or directory Output from the link step is /cygdrive/c/Users/user/AppData/Local/Temp/ccHBBYpt.o:conftest1.f90:(.text+0x14): undefined reference to `_t1_2_' collect2: ld returned 1 exit status no configure: WARNING: The test program that was used and the output may be found in config.log configure: WARNING: The selected Fortran 90 compiler gfortran does not work with the selected Fortran 77 compiler g77. Use the environment variables F90 and F77 respectively to select compatible Fortran compilers. The check here tests to see if a main program compiled with the Fortran 90 compiler can link with a subroutine compiled with the Fortran 77 compiler. checking whether Fortran accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking for which Fortran libraries are needed to link C with Fortran... none checking whether Fortran compiler processes .F files with C preprocessor... yes checking for c++... g++-4 checking whether we are using the GNU C++ compiler... yes checking whether g++-4 accepts -g... yes checking whether the C++ compiler g++-4 can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 5 checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... killall checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking whether install breaks libraries... no checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no checking for bash... /usr/bin/bash checking whether /usr/bin/bash supports arrays... yes checking for doctext... false checking for location of doctext style files... unavailable checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc-4 supports __func__... yes Using gcc to determine dependencies checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... four checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... four configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types. checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 4 checking size of unsigned long... 4 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 12 checking size of void *... 4 checking for ANSI C header files... no checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 2 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 8 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 16 checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking inttypes.h usability... yes checking inttypes.h presence... yes checking for inttypes.h... yes checking stdint.h usability... yes checking stdint.h presence... yes checking for stdint.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 24 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... no checking for C type matching Fortran integer... int checking for size of MPI_Status... 20 checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 4-byte integers... 4 checking for Fortran 90 integer kind for 8-byte integers... 8 checking whether real*8 is supported in Fortran 90... yes checking size of bool... 1 checking how to run the C++ preprocessor... cpp-4 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 24 checking if char * pointers use byte addresses... yes checking for alignment restrictions on ... no checking for alignment restrictions on int32_t... no checking size of MPIR_Bsend_data_t... 56 checking for gcc __asm__ and pentium cmpxchgl instruction... yes checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no checking for gcc __asm__ and IA64 xchg4 instruction... no checking for ANSI C header files... (cached) no checking stdlib.h usability... yes checking stdlib.h presence... yes checking for stdlib.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/types.h usability... yes checking sys/types.h presence... yes checking for sys/types.h... yes checking string.h usability... yes checking string.h presence... yes checking for string.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking unistd.h usability... yes checking unistd.h presence... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for va_copy... yes checking for variable argument list macro functionality... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for gettimeofday... yes sourcing /usr/local/bin/mpich2-1.2.1/src/mpid/ch3/setup_device RUNNING SETUP_DEVICE FOR THE CH3 DEVICE sourcing /usr/local/bin/mpich2-1.2.1/src/mpid/ch3/channels/nemesis/setup_channel RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL sourcing /usr/local/bin/mpich2-1.2.1/src/mpid/common/locks/setup RUNNING SETUP FOR THE PROCESS LOCKS MODULE SPARC V9 inline spin locks supported...no SPARC V8 inline spin locks supported...no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for fgrep... /usr/bin/fgrep checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking for getpid... yes checking for sched_setaffinity... no checking for sched_getaffinity... no checking for bindprocessor... no checking for thread_policy_set... no configure: configuring subsystem in src/openpa configure: WARNING: unrecognized options: --enable-timer-type checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc-4... gcc3 checking for ranlib... ranlib checking whether to enable assertions... yes checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 4 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 bit primitives... yes checking for support for gcc x86 bit primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines config.status: executing depfiles commands configure: WARNING: unrecognized options: --enable-timer-type configure: configuring subsystem in src/mpid/ch3 RUNNING CONFIGURE FOR CH3 DEVICE checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes 16 checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking whether CPP accepts variable length argument lists... yes checking whether byte ordering is bigendian... no checking whether we can use struct ifconf... yes checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of void *... 4 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating util/shm/Makefile config.status: creating util/shmbase/Makefile config.status: creating channels/Makefile config.status: creating util/ftb/Makefile config.status: creating localdefs config.status: creating include/mpid_thread.h config.status: creating include/mpidi_ch3_conf.h config.status: executing default-1 commands copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c === configuring in channels/nemesis (/usr/local/bin/mpich2-1.2.1/src/mpid/ch3/channels/nemesis) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'CFLAGS= -O2' 'LIBS= -lpthread' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR THE NEMESIS CHANNEL checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for inline... inline checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for pid_t... yes checking for net/if.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for unistd.h... (cached) yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking for netinet/in.h... yes checking for mkstemp... yes checking for rand... yes checking for srand... yes checking for OpenPA atomic primitive availability... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking whether struct hostent contains h_addr_list... yes checking whether we can use struct ifconf... yes checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating nemesis/Makefile config.status: creating nemesis/src/Makefile config.status: creating nemesis/utils/Makefile config.status: creating nemesis/utils/replacements/Makefile config.status: creating nemesis/utils/monitor/Makefile config.status: creating nemesis/netmod/Makefile config.status: creating nemesis/netmod/elan/Makefile config.status: creating nemesis/netmod/gm/Makefile config.status: creating nemesis/netmod/mx/Makefile config.status: creating nemesis/netmod/tcp/Makefile config.status: creating nemesis/netmod/ib/Makefile config.status: creating nemesis/netmod/psm/Makefile config.status: creating nemesis/netmod/newmad/Makefile config.status: creating nemesis/netmod/none/Makefile config.status: creating localdefs config.status: creating nemesis/include/mpid_nem_net_module_defs.h config.status: creating nemesis/src/mpid_nem_net_array.c config.status: creating include/mpidi_ch3i_nemesis_conf.h configure: configuring subsystem in src/mpid/common/locks configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives RUNNING CONFIGURE FOR LOCKS checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for ar... ar checking for ranlib... ranlib checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for yield... no checking for sched_yield... yes checking for usleep... yes checking for sleep... yes checking for select... yes checking for mutex_init... no checking for compare_and_swap... no checking for pthread_mutexattr_init... yes checking for pthread_mutexattr_setpshared... yes checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for inline... inline checking for working volatile... yes checking for an ANSI C-conforming const... yes configure: creating ./config.status config.status: creating Makefile config.status: creating mpid_locksconf.h configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives configure: configuring subsystem in src/mpid/common/locks configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives RUNNING CONFIGURE FOR LOCKS checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for ar... ar checking for ranlib... ranlib checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for yield... no checking for sched_yield... yes checking for usleep... yes checking for sleep... yes checking for select... yes checking for mutex_init... no checking for compare_and_swap... no checking for pthread_mutexattr_init... yes checking for pthread_mutexattr_setpshared... yes checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for inline... inline checking for working volatile... yes checking for an ANSI C-conforming const... yes configure: creating ./config.status config.status: creating Makefile config.status: creating mpid_locksconf.h config.status: mpid_locksconf.h is unchanged configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives configure: configuring subsystem in src/mpi/romio configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives Configuring with args --prefix=/home/user/mpich2-install --enable-timer-type=gettimeofday CC=gcc-4 CPP=cpp-4 CXX=g++-4 CXXCPP=cpp-4 --with-atomic-primitives=auto_allow_emulation checking for architecture... i686 configure: WARNING: Unknown architecture ... proceeding anyway ROMIO home directory is /usr/local/bin/mpich2-1.2.1/src/mpi/romio checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking for memalign... yes checking Fortran external names Fortran externals are lower case and have two trailing underscores checking for inline... inline checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 4 checking for int large enough for pointers... yes checking size of long long... 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH2 checking for weak symbol support... pragma weak checking that weak symbols are visible to other files... no no checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... no checking for library containing pthread_create... none required checking for library containing aio_write... (cached) no checking whether aio routines can be used... no checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... no checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... no checking for aio_sigevent member of aiocb structure... no checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... no checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... no checking for unistd.h... (cached) yes checking for large file defines... none setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes setting CC to gcc-4 setting F77 to g77 setting TEST_CC to /usr/local/bin/mpich2-1.2.1/bin/mpicc setting TEST_F77 to /usr/local/bin/mpich2-1.2.1/bin/mpif77 setting CFLAGS to -O2 -DFORTRANDOUBLEUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi-io/Makefile config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating adio/common/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_bgl/Makefile config.status: creating adio/ad_bglockless/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_lustre/Makefile config.status: creating adio/ad_zoidfs/Makefile config.status: creating mpi-io/fortran/Makefile config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating mpi-io/glue/mpich2/Makefile config.status: creating mpi-io/glue/mpich1/Makefile config.status: creating mpi-io/glue/default/Makefile config.status: creating common/dataloop/Makefile config.status: creating adio/include/romioconf.h config.status: executing default-1 commands configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives configure: configuring subsystem in src/pmi/simple configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives RUNNING CONFIGURE FOR THE SIMPLE PMI checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for strings.h... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncasecmp... yes checking for sys/types.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating pmiconf.h configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives configure: configuring subsystem in src/pm/mpd configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives Configuring with args --prefix=/home/user/mpich2-install --enable-timer-type=gettimeofday CC=gcc-4 CPP=cpp-4 CXX=g++-4 CXXCPP=cpp-4 --with-atomic-primitives=auto_allow_emulation checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking whether make sets $(MAKE)... yes checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install /usr/bin/install -c works... yes Using INSTALL=/usr/bin/install -c checking for totalview... no checking for python2.6... python2.6 checking for python2.5... no checking for python2.4... no checking for python2.3... no checking for python2.2... no checking for python2... no checking for python... python checking that python2.6 is a valid python version... yes checking that the cPickle module is available for python2.6... yes checking that rebaseall is ok on this cygwin system... checking for library containing socket... none required checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for strings.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for putenv... yes checking for socket... yes checking for snprintf... yes checking whether snprintf needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating mpdconf.h configure: WARNING: unrecognized options: --enable-timer-type, --with-atomic-primitives configure: configuring subsystem in src/pm/hydra checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc-4... gcc3 checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc-4... /usr/i686-pc-cygwin/bin/ld.exe checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc-4 object... ok checking for dlfcn.h... yes checking for objdir... .libs checking if gcc-4 supports -fno-rtti -fno-exceptions... no checking for gcc-4 option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc-4 PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc-4 static flag -static works... yes checking if gcc-4 supports -c -o file.o... yes checking if gcc-4 supports -c -o file.o... (cached) yes checking whether the gcc-4 linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking for doxygen... /usr/bin/doxygen checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for pthread_key_create in -lpthread... yes checking for socket in -lsocket... no checking for gethostbyname in -lnsl... no checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for putenv... yes checking for stat... yes checking for putenv... (cached) yes checking whether putenv needs a declaration... no checking for environ in unistd.h... yes checking boot-strap server... ssh,rsh,fork,slurm checking communication subsystem... none checking resource management kernel... dummy,pbs checking process manager... pmiserv checking user interface... mpiexec checking communication subsystem... none checking debugging support... no checking warnings... no checking process binding library... plpa checking if plpa works correctly... no checking checkpointing library... none checking whether the compiler allows __VA_ARGS__... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating tools/bootstrap/include/bsci.h config.status: creating rmk/src/rmki_init.c config.status: creating rmk/include/rmki.h config.status: creating css/src/cssi_init.c config.status: creating css/include/cssi.h config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in ../../mpl (/usr/local/bin/mpich2-1.2.1/src/pm/hydra/../../mpl) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc-4... gcc3 checking for ranlib... ranlib checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes configure: creating ./config.status config.status: creating Makefile config.status: creating include/config.h config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines config.status: executing depfiles commands configure: configuring subsystem in src/pm/gforker RUNNING CONFIGURE FOR THE GFORKER PM checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strdup... yes checking whether strdup needs a declaration... no checking for setsid... yes checking for isatty... yes checking for getsid... yes checking for library containing socketpair... none required checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for sys/types.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking sys/ptrace.h usability... no checking sys/ptrace.h presence... no checking for sys/ptrace.h... no checking for strsignal... yes checking for sigaction... yes checking for signal... yes checking for sigset... yes checking for struct sigaction... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking wait.h usability... yes checking wait.h presence... yes checking for wait.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating forkerconf.h === configuring in ../util (/usr/local/bin/mpich2-1.2.1/src/pm/gforker/../util) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR THE PM UTILITIES checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for ar... ar checking for ranlib... ranlib checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for strtol... yes checking for time... yes checking for gettimeofday... yes checking whether struct hostent contains h_addr_list... yes checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for pid_t... yes checking for setsid... yes checking for isatty... yes checking for getsid... yes checking whether getsid is prototyped in unistd.h... yes checking for unsetenv... yes checking for cygwin1.dll in /bin... yes checking for environ in unistd.h... yes checking for library containing socketpair... none required checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking sys/ptrace.h usability... no checking sys/ptrace.h presence... no checking for sys/ptrace.h... no checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for unistd.h... (cached) yes checking whether struct iovec is defined in sys/uio.h... yes checking for strsignal... yes checking whether strsignal needs a declaration... no checking for snprintf... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking whether snprintf needs a declaration... no checking whether strdup needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for gethostname... yes checking whether gethostname needs a declaration... no checking for select... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking whether FD_ZERO works... yes checking for sched_setaffinity... no checking for sched_getaffinity... no checking for bindprocessor... no checking for thread_policy_set... no checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for stdlib.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking wait.h usability... yes checking wait.h presence... yes checking for wait.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes configure: creating ./config.status config.status: creating Makefile config.status: creating test/Makefile config.status: creating pmutilconf.h configure: configuring subsystem in src/mpe2 Configuring MPE Profiling System with '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2 checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH This MPE build is part of the MPICH2 build checking for leftover Makefiles in subpackages ... none checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking whether MPI_CC has been set ... /usr/local/bin/mpich2-1.2.1/bin/mpicc checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking whether MPI_F77 has been set ... /usr/local/bin/mpich2-1.2.1/bin/mpif77 checking how to get verbose linking output from g77... -v checking for Fortran 77 libraries of g77... -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpthread -lfrtbegin -lg2c -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 checking whether g77 accepts the FLIBS found by autoconf... yes checking whether C can link with -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lpthread -lfrtbegin -lg2c -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32... yes checking for linker for Fortran main programs... Use Fortran to link programs checking whether Fortran 77 and C objects are compatible... yes checking for Fortran 77 name mangling... lower doubleunderscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking for Fortran 77 flag for library directories... -L checking for include directory flag for Fortran... -I checking how to run the C preprocessor... cpp-4 checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ranlib... ranlib checking whether install breaks libraries... no configure: creating ./config.status config.status: creating Makefile config.status: creating sbin/mpetestlink config.status: creating sbin/mpetestexec config.status: creating sbin/mpetestexeclog config.status: creating sbin/mpeinstall config.status: creating sbin/mpecheckinstall config.status: WARNING: 'sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting config.status: creating sbin/mpecheckbuild config.status: creating etc/mpe_help.conf config.status: creating etc/mpe_f77env.conf config.status: creating mpe_conf.h config.status: executing default-1 commands === configuring in src/misc (/usr/local/bin/mpich2-1.2.1/src/mpe2/src/misc) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. Configuring MPE Miscellaneous Library with '--disable-option-checking' '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2/src/misc checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc-4 and cc understand -c and -o together... yes checking how to run the C preprocessor... cpp-4 checking for dbx... no checking for gdb... /usr/bin/gdb checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sysinfo... yes checking for uname... yes checking for gethostbyname... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/systeminfo.h usability... no checking sys/systeminfo.h presence... no checking for sys/systeminfo.h... no checking for sys/types.h... (cached) yes checking for sighandler_t... yes checking for kill... yes checking whether kill needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dbxerr.c config.status: creating mpe_misc_conf.h === configuring in src/callstack (/usr/local/bin/mpich2-1.2.1/src/mpe2/src/callstack) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. Configuring MPE CallStack Library with '--disable-option-checking' '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2/src/callstack checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc-4 and cc understand -c and -o together... yes checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking execinfo.h usability... no checking execinfo.h presence... no checking for execinfo.h... no checking ucontext.h usability... no checking ucontext.h presence... no checking for ucontext.h... no checking for fdopen... yes checking whether fdopen needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/mpe_callstack.h config.status: creating etc/mpe_callstack_ldflags.conf config.status: creating mpe_callstack_conf.h === configuring in src/logging (/usr/local/bin/mpich2-1.2.1/src/mpe2/src/logging) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. Configuring MPE Logging Library and Tools with '--disable-option-checking' '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2/src/logging checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc-4 and cc understand -c and -o together... yes checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking for sys/stat.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for header that defines C99 integer types, intXX_t ... checking for inttypes.h... (cached) yes checking whether defines the PRIdXX macros ... yes checking if can be behind system headers ... yes checking size of void *... 4 checking for address-sized integer ... CLOG_int32_t checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for gethostname... yes checking whether gethostname needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for srand48... yes checking whether srand48 needs a declaration... no checking for lrand48... yes checking whether lrand48 needs a declaration... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for O_LARGEFILE for open() ... no checking for O_BINARY for open() ... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_mutex_lock in -lpthread... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/clog_inttypes.h config.status: creating include/mpi_null.h config.status: creating include/mpe_log_thread.h config.status: creating etc/mpe_log.conf config.status: creating etc/mpe_nolog.conf config.status: creating etc/mpe_log_postlib.conf config.status: creating mpe_logging_conf.h === configuring in src/wrappers (/usr/local/bin/mpich2-1.2.1/src/mpe2/src/wrappers) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. Configuring MPE Wrapper Libraries For MPI with '--disable-option-checking' '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2/src/wrappers checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for working alloca.h... yes checking for alloca... yes checking for stdarg is correct... yes checking if compiler accepts prototypes ... yes checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for safe PMPI invocations ... no checking for the value of MPI_STATUS_SIZE ... 5 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_f77env.conf config.status: creating etc/mpe_mpilog.conf config.status: creating etc/mpe_mpitrace.conf config.status: creating mpe_wrappers_conf.h === configuring in src/graphics (/usr/local/bin/mpich2-1.2.1/src/mpe2/src/graphics) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. Configuring MPE X Graphics Library with '--disable-option-checking' '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2/src/graphics checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc-4 and cc understand -c and -o together... yes checking how to run the C preprocessor... cpp-4 checking for X... libraries , headers checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of void *... 4 checking for long pointer... no checking for system... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating contrib/life/Makefile config.status: creating contrib/mandel/Makefile config.status: creating contrib/mastermind/Makefile config.status: creating contrib/test/Makefile config.status: creating etc/mpe_mpianim.conf config.status: creating etc/mpe_graphics.conf config.status: creating mpe_graphics_conf.h === configuring in src/collchk (/usr/local/bin/mpich2-1.2.1/src/mpe2/src/collchk) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. Configuring MPE Collective and Datatype Checking Library with '--disable-option-checking' '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2/src/collchk checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for working alloca.h... yes checking for alloca... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_mpicheck.conf config.status: creating mpe_collchk_conf.h === configuring in src/slog2sdk (/usr/local/bin/mpich2-1.2.1/src/mpe2/src/slog2sdk) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. checking for current directory name... /usr/local/bin/mpich2-1.2.1/src/mpe2/src/slog2sdk Configuring SLOG2SDK with '--disable-option-checking' '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/usr/local/bin/mpich2-1.2.1/bin/mpicc' 'MPI_F77=/usr/local/bin/mpich2-1.2.1/bin/mpif77' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS= -lpthread ' 'CPPFLAGS= -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -I/usr/local/bin/mpich2-1.2.1/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking if CLASSPATH is set... yes checking if CLASSPATH contains current path... no, prepend . to CLASSPATH checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for java in user's PATH... found /cygdrive/c/Windows/system32/java checking if /cygdrive/c/Windows/system32/java runs simple java class... no checking for java in user's PATH... not found configure: WARNING: No Java Virtual Machine can be found anywhere! MPE2: "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" have been configured checking size of OPA_ptr_t... 4 checking the sizeof MPI_Offset... 8 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/include/Makefile config.status: creating src/include/mpich2info.h config.status: creating mpich2-doxygen config.status: creating src/include/mpichtimer.h config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/packaging/Makefile config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc config.status: creating src/packaging/pkgconfig/Makefile config.status: creating src/packaging/envmods/mpich2.module config.status: WARNING: 'src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting config.status: creating src/packaging/envmods/Makefile config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77 config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90 config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/env/Makefile config.status: creating src/util/createshlib config.status: creating src/mpi/Makefile config.status: creating src/mpi/attr/Makefile config.status: creating src/mpi/coll/Makefile config.status: creating src/mpi/comm/Makefile config.status: creating src/mpi/datatype/Makefile config.status: creating src/mpi/debugger/Makefile config.status: creating src/mpi/errhan/Makefile config.status: creating src/mpi/group/Makefile config.status: creating src/mpi/init/Makefile config.status: creating src/mpi/misc/Makefile config.status: creating src/mpi/pt2pt/Makefile config.status: creating src/mpi/rma/Makefile config.status: creating src/mpi/spawn/Makefile config.status: creating src/mpi/timer/Makefile config.status: creating src/mpi/topo/Makefile config.status: creating src/mpid/Makefile config.status: creating src/mpid/common/Makefile config.status: creating src/mpid/common/datatype/Makefile config.status: creating src/mpid/common/datatype/dataloop/Makefile config.status: creating src/pm/Makefile config.status: creating src/pmi/Makefile config.status: creating src/pmi/simple/Makefile config.status: creating src/nameserv/Makefile config.status: creating src/nameserv/file/Makefile config.status: creating src/nameserv/mpd/Makefile config.status: creating src/nameserv/pmi/Makefile config.status: creating src/nameserv/test/Makefile config.status: creating src/util/Makefile config.status: creating src/util/info/Makefile config.status: creating src/util/instrm/Makefile config.status: creating src/util/thread/Makefile config.status: creating src/util/mem/Makefile config.status: creating src/util/msgs/Makefile config.status: creating src/util/param/Makefile config.status: creating src/util/dbg/Makefile config.status: creating src/util/dbg/getfuncstack config.status: creating src/util/osserv/Makefile config.status: creating src/util/procmap/Makefile config.status: creating src/util/other/Makefile config.status: creating src/include/mpi.h config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/basic/Makefile config.status: creating test/commands/Makefile config.status: creating test/commands/cmdtests config.status: creating test/mpid/Makefile config.status: creating test/mpid/ch3/Makefile config.status: creating test/util/timer/Makefile config.status: creating examples/Makefile config.status: creating examples/f77/Makefile config.status: creating examples/f90/Makefile config.status: creating examples/cxx/Makefile config.status: creating src/util/logging/Makefile config.status: creating src/util/logging/common/Makefile config.status: creating doc/Makefile config.status: creating doc/mansrc/Makefile config.status: creating doc/mansrc/createhtmlindex config.status: creating doc/refman/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/design/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/windev/Makefile config.status: creating src/include/mpichconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands config.status: executing default-6 commands config.status: executing default-7 commands config.status: executing default-8 commands Updating dependency directories .deps FIND: Parameter format not correct config.status: executing default-9 commands config.status: executing default-10 commands config.status: executing default-11 commands config.status: executing default-12 commands config.status: executing default-13 commands === configuring in test/mpi (/usr/local/bin/mpich2-1.2.1/test/mpi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/user/mpich2-install' '--enable-timer-type=gettimeofday' 'CC=gcc-4' 'CPP=cpp-4' 'CXX=g++-4' 'CXXCPP=cpp-4' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc-4 checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4 accepts -g... yes checking for gcc-4 option to accept ISO C89... none needed checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++-4 accepts -g... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking how to run the C preprocessor... cpp-4 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for memory.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... no checking for pthread_barrier_wait... no Configuring tests for MPICH2 checking whether struct hostent contains h_addr_list... no checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking for Fortran 77 name mangling... lower doubleunderscore checking for Fortran libraries needed for getarg... none needed checking whether Fortran has pointer declaration... no checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking size of void *... 4 checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... int checking for perl... /usr/bin/perl configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/spawn/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f90/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed.