<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"><html><head><meta content="text/html; charset=utf-8" http-equiv="Content-Type"></head><body>Am using mipch2-1.2.7 version.<div>Sent from my BlackBerry® on Reliance Mobile, India's No. 1 Network. Go for it!</div><hr/><div><b>From: </b> aiswarya pawar <aiswarya.pawar@gmail.com>
</div><div><b>Date: </b>Wed, 14 Dec 2011 19:13:17 +0530</div><div><b>To: </b><mpich-discuss@mcs.anl.gov></div><div><b>Subject: </b>submission error on IBM cluster</div><div><br/></div>Hi users,<br><div class="gmail_quote"><br>I have a submission script for gromacs software to be used on IBM cluster, but i get an error while running it. the script goes like this=<br><br>#!/bin/sh<br># @ error = job1.$(Host).$(Cluster).$(Process).err<br>
# @ output = job1.$(Host).$(Cluster).$(Process).out<br># @ class = ptask32<br># @ job_type = parallel<br># @ node = 1<br># @ tasks_per_node = 4<br># @ queue<br><br>echo "_____________________________________"<br>
echo "LOADL_STEP_ID=$LOADL_STEP_ID"<br>echo "_____________________________________"<br><br>machine_file="/tmp/machinelist.$LOADL_STEP_ID"<br>rm -f $machine_file<br>for node in $LOADL_PROCESSOR_LIST<br>
do<br>echo $node >> $machine_file<br>done<br>machine_count=`cat /tmp/machinelist.$LOADL_STEP_ID|wc -l`<br>echo $machine_count<br>echo MachineList:<br>cat /tmp/machinelist.$LOADL_STEP_ID<br>echo "_____________________________________"<br>
unset LOADLBATCH<br>env |grep LOADLBATCH<br>cd /home/staff/1adf/<br>/usr/bin/poe /home/gromacs-4.5.5/bin/mdrun -deffnm /home/staff/1adf/md -procs $machine_count -hostfile /tmp/machinelist.$LOADL_STEP_ID<br>rm /tmp/machinelist.$LOADL_STEP_ID<br>
<br><br>i get an out file as=<br>_____________________________________<br>LOADL_STEP_ID=cnode39.97541.0<br>_____________________________________<br>4<br>MachineList:<br>cnode62<br>cnode7<br>cnode4<br>cnode8<br>_____________________________________<br>
p0_25108: p4_error: interrupt SIGx: 4<br>p0_2890: p4_error: interrupt SIGx: 4<br>p0_2901: p4_error: interrupt SIGx: 15<br>p0_22760: p4_error: interrupt SIGx: 15<br><br><br>an error file =<br><br>Reading file /home/staff/1adf/md.tpr, VERSION 4.5.4 (single precision)<br>
Sorry couldn't backup /home/staff/1adf/md.log to /home/staff/1adf/#md.log.14#<br><br>Back Off! I just backed up /home/staff/1adf/md.log to /home/staff/1adf/#md.log.14#<br>ERROR: 0031-300 Forcing all remote tasks to exit due to exit code 1 in task 0<br>
<br>Please anyone can help with this error.<br><br>Thanks<br><br><br>
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