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I do not have any experience in LAM-MPI. So, my answer only concerns
OpenMPI.<br>
<br>
To verify that your libmpi.so library contains (or not) ROMIO, just
issue the following command:<br>
nm libmpi.so | grep MPI_File<br>
<br>
Your should see all the ROMIO interface.<br>
<br>
There is no mpio.h file, all is in mpi.h.<br>
<br>
Pascal<br>
<br>
shraddha a écrit :
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<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">Dear
Pascal,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">
I have already
tried with your suggested option, but during MAKE I am getting below
mentioned
error for LAM-MPI-7.1.4 and 7.1.3.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">g++ -O3
-pthread -o impid
client.o comm.o dance.o endian.o flow_control.o host.o host_ack.o
host_long.o
host_queue.o impid.o lamnodes.o local.o local_ack.o local_long.o
local_queue.o
local_req.o procs.o packet_mgmt.o router.o sequence.o yes
../../../share/libmpi/.libs/libmpi.a
../../../share/liblam/.libs/liblam.a -ldl /usr/local/lib/libtorque.so
-lnsl
-lutil<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">g++: yes:
No such file or
directory<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">make[3]:
*** [impid] Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">make[3]:
Leaving directory
`/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb/sys/impid'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">make[2]:
*** [all-recursive]
Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">make[2]:
Leaving directory
`/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb/sys'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">make[1]:
*** [all-recursive]
Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">make[1]:
Leaving directory
`/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">make: ***
[all-recursive] Error
1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">
with OpenMPI-1.5 <o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">./configure
--prefix=/share/apps/OpenMPI/romio-openmpi/gnu/gnu-412 CC=gcc CXX=g++
F77=gfortran FC=gfortran --with-threads
--with-io-romio-flags=-with-file-system=ufs+nfs<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">Make and
make install
successful.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">But not
getting libmpio.a or
mpio.h file.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="color: rgb(31, 73, 125);">openmpi-1.5]$
ls
/share/apps/OpenMPI/romio-openmpi/gnu/gnu-412/lib<o:p></o:p></span></b></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmca_common_sm.la
libmpi.so libotf.so libvt-mpi.so.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmca_common_sm.so
libmpi.so.1 libotf.so.0 libvt-mpi.so.0.0.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmca_common_sm.so.2
libmpi.so.1.0.0 libotf.so.0.0.1 libvt-mt.a<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmca_common_sm.so.2.0.0
libompitrace.la libvt.a libvt-mt.la<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_cxx.la
libompitrace.so libvt-hyb.a libvt-mt.so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_cxx.so
libompitrace.so.0 libvt-hyb.la libvt-mt.so.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_cxx.so.1
libompitrace.so.0.0.0 libvt-hyb.so libvt-mt.so.0.0.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_cxx.so.1.0.0
libopen-pal.la libvt-hyb.so.0 libvt-pomp.a<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f77.la
libopen-pal.so libvt-hyb.so.0.0.0 libvt-pomp.la<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f77.so
libopen-pal.so.1 libvt-java.la libvt.so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f77.so.1
libopen-pal.so.1.0.0 libvt-java.so libvt.so.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f77.so.1.0.0
libopen-rte.la libvt-java.so.0 libvt.so.0.0.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f90.la
libopen-rte.so libvt-java.so.0.0.0 mpi.mod<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f90.so
libopen-rte.so.1 libvt.la openmpi<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f90.so.1
libopen-rte.so.1.0.0 libvt-mpi.a pkgconfig<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi_f90.so.1.0.0
libotf.a
libvt-mpi.la<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">libmpi.la
libotf.la libvt-mpi.so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">Is this
OpenMPI installed
successfully with MPI-IO libraries or not, I am not able to conclude.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">-Shraddha
Desai<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"><o:p> </o:p></span></p>
<div>
<div
style="border-style: solid none none; border-color: rgb(181, 196, 223) -moz-use-text-color -moz-use-text-color; border-width: 1pt medium medium; padding: 3pt 0in 0in;">
<p class="MsoNormal"><b><span
style="font-size: 10pt; font-family: "Tahoma","sans-serif"; color: windowtext;">From:</span></b><span
style="font-size: 10pt; font-family: "Tahoma","sans-serif"; color: windowtext;">
<a class="moz-txt-link-abbreviated" href="mailto:mpich-discuss-bounces@mcs.anl.gov">mpich-discuss-bounces@mcs.anl.gov</a>
[<a class="moz-txt-link-freetext" href="mailto:mpich-discuss-bounces@mcs.anl.gov">mailto:mpich-discuss-bounces@mcs.anl.gov</a>] <b>On Behalf Of </b>Pascal
Deveze<br>
<b>Sent:</b> Tuesday, February 22, 2011 6:32 PM<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:mpich-discuss@mcs.anl.gov">mpich-discuss@mcs.anl.gov</a><br>
<b>Subject:</b> Re: [mpich-discuss] Regarding ROMIO package
installation with MPICH2
and LAM-MPI<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Use the configure command at the root level with
the right
flag: with_io_romio_flags="--with-filesystem=ufs+nfs".<br>
This flag will generate MPI with ROMIO, with the support of UFS and NFS.<br>
<br>
If you want to transmit some other flags to the ROMIO configure, just
add them
: with_io_romio_flags="--with-filesystem=ufs+nfs --flag1=xx
flag2=yyy"<br>
<br>
Pascal<br>
<br>
<br>
shraddha a écrit : <o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">Dear
Pascal,</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">
My simple question is how can I create libmpio.a when MPICH2 or OpenMPI
is
installed with ROMIO support.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">
OR</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">
How can I install ROMIO on top-of MPICH2 , LAM-MPI or OpenMPI??</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">-Shraddha
Desai</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"> </span><o:p></o:p></p>
<div>
<div
style="border-style: solid none none; border-color: -moz-use-text-color; border-width: 1pt medium medium; padding: 3pt 0in 0in;">
<p class="MsoNormal"><b><span
style="font-size: 10pt; font-family: "Tahoma","sans-serif"; color: windowtext;">From:</span></b><span
style="font-size: 10pt; font-family: "Tahoma","sans-serif"; color: windowtext;">
<a moz-do-not-send="true"
href="mailto:mpich-discuss-bounces@mcs.anl.gov">mpich-discuss-bounces@mcs.anl.gov</a>
[<a moz-do-not-send="true"
href="mailto:mpich-discuss-bounces@mcs.anl.gov">mailto:mpich-discuss-bounces@mcs.anl.gov</a>]
<b>On Behalf Of </b>Pascal Deveze<br>
<b>Sent:</b> Tuesday, February 22, 2011 1:30 PM<br>
<b>To:</b> <a moz-do-not-send="true"
href="mailto:mpich-discuss@mcs.anl.gov">mpich-discuss@mcs.anl.gov</a><br>
<b>Subject:</b> Re: [mpich-discuss] Regarding ROMIO package
installation with
MPICH2 and LAM-MPI</span><o:p></o:p></p>
</div>
</div>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">OK. You have already an MPI implementation.<br>
<br>
mpicc and mpif90 are wrappers that make "a bit more" than just
calling gcc and gfortran. That could explain your error.<br>
Do you run "configure" with gfortran and gcc ?<br>
<br>
Pascal<br>
<br>
shraddha a écrit : <o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">Dear
Pascal,</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">
As ROMIO configure is having –mpi (can be lam, mpich2) and
–mpilibdir, -mpibindir, -mpilib options that means I am already having
MPI implementation installed on my cluster, I am installing ROMIO
(MPI-IO
package) with the the use of mpi.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">Can you
please correct me if I
am wrong.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);">-Shraddha
Desai</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color: rgb(31, 73, 125);"> </span><o:p></o:p></p>
<div>
<div
style="border-style: solid none none; border-color: -moz-use-text-color; border-width: 1pt medium medium; padding: 3pt 0in 0in;">
<p class="MsoNormal"><b><span
style="font-size: 10pt; font-family: "Tahoma","sans-serif"; color: windowtext;">From:</span></b><span
style="font-size: 10pt; font-family: "Tahoma","sans-serif"; color: windowtext;">
<a moz-do-not-send="true"
href="mailto:mpich-discuss-bounces@mcs.anl.gov">mpich-discuss-bounces@mcs.anl.gov</a>
[<a moz-do-not-send="true"
href="mailto:mpich-discuss-bounces@mcs.anl.gov">mailto:mpich-discuss-bounces@mcs.anl.gov</a>]
<b>On Behalf Of </b>Pascal Deveze<br>
<b>Sent:</b> Monday, February 21, 2011 8:35 PM<br>
<b>To:</b> <a moz-do-not-send="true"
href="mailto:mpich-discuss@mcs.anl.gov">mpich-discuss@mcs.anl.gov</a><br>
<b>Subject:</b> Re: [mpich-discuss] Regarding ROMIO package
installation with MPICH2
and LAM-MPI</span><o:p></o:p></p>
</div>
</div>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Why do you specify -cc=mpicc -fc=mpif90 ?<br>
I mean you have to specify compilers, not MPI compilers.<br>
<br>
Pascal<br>
<br>
shraddha a écrit : <o:p></o:p></p>
<p class="MsoNormal">Dear Sir,<o:p></o:p></p>
<p class="MsoNormal">
I have tried to install ROMIO with MPICH2 with following configure
command.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal"><b>romio-1.2.5.1]$ ./configure
--prefix=/home/shraddha/MPICH2/gnu/romio-1.2.5.1 -mpi=mpich
-file_system=ufs+nfs -mpiincdir=/share/apps/mpich2/gnu/include
-mpibindir=/share/apps/mpich2/gnu/bin -cc=mpicc -fc=mpif90 2>&1
| tee
LOG-config-3</b><o:p></o:p></p>
<p class="MsoNormal"><b> </b><o:p></o:p></p>
<p class="MsoNormal"><b>Successful configuration, but make giving
error</b><o:p></o:p></p>
<p class="MsoNormal"><b> </b><o:p></o:p></p>
<p class="MsoNormal"><b>Make Error:</b><o:p></o:p></p>
<p class="MsoNormal"><b> </b><o:p></o:p></p>
<p class="MsoNormal">mpicc -O -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H
-I/share/apps/mpich2/gnu/include
-I/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io -I../include
-I/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io/../adio/include
-I../adio/include
-c iread.c<o:p></o:p></p>
<p class="MsoNormal">iread.c: In function 'PMPI_File_iread':<o:p></o:p></p>
<p class="MsoNormal">iread.c:132: warning: passing argument 7 of
'fh->fns->ADIOI_xxx_IreadContig' from incompatible pointer type<o:p></o:p></p>
<p class="MsoNormal">iread.c:138: warning: assignment makes integer
from pointer
without a cast<o:p></o:p></p>
<p class="MsoNormal">iread.c:139: error: invalid type argument of
'->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:140: error: invalid type argument of
'->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:141: error: invalid type argument of
'->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:142: error: invalid type argument of
'->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:143: error: invalid type argument of
'->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:162: warning: passing argument 7 of
'fh->fns->ADIOI_xxx_IreadStrided' from incompatible pointer type<o:p></o:p></p>
<p class="MsoNormal">make[2]: *** [iread.o] Error 1<o:p></o:p></p>
<p class="MsoNormal">make[2]: Leaving directory
`/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io'<o:p></o:p></p>
<p class="MsoNormal">Make failed in directory mpi-io<o:p></o:p></p>
<p class="MsoNormal">make[1]: *** [mpiolib] Error 1<o:p></o:p></p>
<p class="MsoNormal">make[1]: Leaving directory
`/home/kmathur/MPICH2/gnu/romio-1.2.5.1'<o:p></o:p></p>
<p class="MsoNormal">make: *** [mpio] Error 2<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">I am trying to configure ROMIO with lam-mpi but
getting
error at configure stage:<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal"><b>romio-1.2.5.1]$ ./configure</b>
--prefix=/share/apps/ROMIO/LAMMPI/gnu/gnu-412 -mpi=lam_mpi
-file_system=ufs+nfs
-mpiincdir=/share/apps/LAM-MPI/gnu/gnu-412/include
-mpilib=/share/apps/LAM-MPI/gnu/gnu-412/lib/libmpi.a -cc=mpicc
-fc=mpif90<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">checking if a simple MPI program compiles and
links...<o:p></o:p></p>
<p class="MsoNormal">*# Unable to compile a simple MPI program<o:p></o:p></p>
<p class="MsoNormal">*# Use the -mpi, -mpiincdir, and -mpilib options
to
configure to specify the<o:p></o:p></p>
<p class="MsoNormal">*# MPI implementation, the include path for
mpi.h, and the
MPI library to link<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Can you please tell me the proper way to install
ROMIO with
both MPICH2 and LAM-MPI??<o:p></o:p></p>
<p class="MsoNormal">How can I create libmpio.a ?? which will be
useful to
compile MPI-IO programs.<o:p></o:p></p>
<p class="MsoNormal">Your help would be greatly appreciable for me.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Regards,<o:p></o:p></p>
<p class="MsoNormal">Shraddha Desai<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
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