Configuring MPICH2 version 1.3.1 with '-prefix=/home/Jim/mpich2-install' Running on system: CYGWIN_NT-6.1-WOW64 HP-PC 1.7.7(0.230/5/3) 2010-08-31 09:58 i686 Cygwin checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for grep that handles long lines and -e... /usr/bin/grep checking for fgrep... /usr/bin/grep -F Executing mpich2prereq in /home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3 with Executing mpich2prereq in /home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis configure: ===== configuring src/mpl ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/mpl/configure '-prefix=/home/Jim/mpich2-install' --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for variable argument list macro functionality... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: ===== done with src/mpl configure ===== configure: ===== configuring src/openpa ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/openpa/configure --with-atomic-primitives=auto_allow_emulation '-prefix=/home/Jim/mpich2-install' --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... no checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sched_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 4 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines configure: ===== done with src/openpa configure ===== sourcing /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/mpich2prereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak does not work outside of a file no checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for ifort... no checking for pgf77... no checking for af77... no checking for xlf... no checking for frt... no checking for cf77... no checking for fort77... no checking for fl32... no checking for fort... no checking for ifc... no checking for efc... no checking for ftn... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgfortranbegin -lgfortran -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether C can link with -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lgfortranbegin -lgfortran -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32... yes checking for linker for Fortran main programs... Use Fortran to link programs checking whether Fortran 77 and C objects are compatible... yes checking for Fortran 77 name mangling... lower underscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking whether Fortran init will work with C... yes checking for ifort... no checking for pgf90... no checking for pathf90... no checking for pathf95... no checking for xlf90... no checking for xlf95... no checking for f90... no checking for epcf90... no checking for f95... no checking for fort... no checking for lf95... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran ) works... yes checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking whether Fortran accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking for which Fortran libraries are needed to link C with Fortran... none checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether we are using the GNU Fortran compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking whether the Fortran 90 compiler (gfortran ) works... yes checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking for Fortran 90 compiler vendor... gnu checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking whether the C++ compiler c++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 3 checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... killall checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking whether install breaks libraries... no checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /usr/bin/bash checking whether /usr/bin/bash supports arrays... yes checking for doctext... false checking for location of doctext style files... unavailable checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes Using gcc to determine dependencies checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... four checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... four configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types. checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 4 checking size of unsigned long... 4 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 12 checking size of void *... 4 checking for ANSI C header files... no checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 2 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 8 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 16 checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking inttypes.h usability... yes checking inttypes.h presence... yes checking for inttypes.h... yes checking stdint.h usability... yes checking stdint.h presence... yes checking for stdint.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 24 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... no checking for C type matching Fortran integer... int checking for size of MPI_Status... 20 checking for values of Fortran logicals... True is 1 and False is 0 checking for BSD/POSIX style global symbol lister... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 4 checking the minimum alignment of Fortran common block of 5 integers... 4, too small! reset to 32 checking for Fortran 90 integer kind for 4-byte integers... 4 checking for Fortran 90 integer kind for 8-byte integers... 8 checking if real*8 is supported in Fortran 90... no checking size of bool... 1 checking how to run the C++ preprocessor... c++ -E checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 24 checking if char * pointers use byte addresses... yes checking for alignment restrictions on ... no checking for alignment restrictions on int32_t... no checking size of MPIR_Bsend_data_t... 56 checking for gcc __asm__ and pentium cmpxchgl instruction... yes checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no checking for gcc __asm__ and IA64 xchg4 instruction... no checking for ANSI C header files... (cached) no checking stdlib.h usability... yes checking stdlib.h presence... yes checking for stdlib.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/types.h usability... yes checking sys/types.h presence... yes checking for sys/types.h... yes checking string.h usability... yes checking string.h presence... yes checking for string.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking unistd.h usability... yes checking unistd.h presence... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... yes checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes sourcing /home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/setup_device RUNNING SETUP_DEVICE FOR THE CH3 DEVICE sourcing /home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/setup_channel RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... no checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking for thread local storage specifier... __thread checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking for getpid... yes checking for sched_setaffinity... no checking for sched_getaffinity... no checking for bindprocessor... no checking for thread_policy_set... no configure: ===== configuring src/mpid/ch3 ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/configure '-prefix=/home/Jim/mpich2-install' --disable-option-checking RUNNING CONFIGURE FOR CH3 DEVICE checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking uuid/uuid.h usability... yes checking uuid/uuid.h presence... yes checking for uuid/uuid.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking whether CPP accepts variable length argument lists... yes checking whether byte ordering is bigendian... no checking whether we can use struct ifconf... yes configure: ===== configuring channels/nemesis ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/configure '-prefix=/home/Jim/mpich2-install' '--disable-option-checking' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' --disable-option-checking RUNNING CONFIGURE FOR THE NEMESIS CHANNEL checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for pid_t... yes checking for net/if.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for unistd.h... (cached) yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking for netinet/in.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for signal... yes checking for mkstemp... yes checking for rand... yes checking for srand... yes checking for OpenPA atomic primitive availability... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking whether struct hostent contains h_addr_list... yes checking whether we can use struct ifconf... yes checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating nemesis/Makefile config.status: creating nemesis/src/Makefile config.status: creating nemesis/utils/Makefile config.status: creating nemesis/utils/replacements/Makefile config.status: creating nemesis/utils/monitor/Makefile config.status: creating nemesis/netmod/Makefile config.status: creating nemesis/netmod/elan/Makefile config.status: creating nemesis/netmod/gm/Makefile config.status: creating nemesis/netmod/mx/Makefile config.status: creating nemesis/netmod/tcp/Makefile config.status: creating nemesis/netmod/psm/Makefile config.status: creating nemesis/netmod/newmad/Makefile config.status: creating nemesis/netmod/none/Makefile config.status: creating localdefs config.status: creating nemesis/include/mpid_nem_net_module_defs.h config.status: creating nemesis/src/mpid_nem_net_array.c config.status: creating include/mpidi_ch3i_nemesis_conf.h configure: ===== done with channels/nemesis configure ===== configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating channels/Makefile config.status: creating util/ftb/Makefile config.status: creating localdefs config.status: creating include/mpid_thread.h config.status: creating include/mpidi_ch3_conf.h config.status: executing default-1 commands copying /home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/../common/thread/mpid_thread_mpe.c to src/mpid_thread.c configure: ===== done with src/mpid/ch3 configure ===== configure: ===== configuring src/mpi/romio ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/mpi/romio/configure '-prefix=/home/Jim/mpich2-install' --disable-option-checking Configuring with args -prefix=/home/Jim/mpich2-install --disable-option-checking checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... i686 configure: WARNING: Unknown architecture ... proceeding anyway ROMIO home directory is /home/Jim/libraries/mpich2-1.3.1/src/mpi/romio checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 4 checking for int large enough for pointers... yes checking size of long long... 8 checking for f90... no checking for xlf90... no checking for pgf90... no checking for ifort... no checking for epcf90... no checking for f95... no checking for fort... no checking for xlf95... no checking for lf95... no checking for pathf90... no checking for g95... no checking for fc... fc checking for extension for Fortran 90 programs... unknown! checking for Fortran 90 KIND parameter for 8-byte integers... unavailable checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH2 checking for weak symbol support... pragma weak checking that weak symbols are visible to other files... no no checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... no checking for library containing pthread_create... none required checking for library containing aio_write... (cached) no checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... no checking if sys/aio.h exists and can be compiled... no checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... no checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... no checking for unistd.h... (cached) yes checking for large file defines... none setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes setting CC to gcc setting F77 to gfortran setting TEST_CC to /tmp/Jim/mpich2-1.3.1/bin/mpicc setting TEST_F77 to /tmp/Jim/mpich2-1.3.1/bin/mpif77 setting CFLAGS to -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi-io/Makefile config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating adio/common/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_bgl/Makefile config.status: creating adio/ad_bglockless/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_lustre/Makefile config.status: creating adio/ad_zoidfs/Makefile config.status: creating mpi-io/fortran/Makefile config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating mpi-io/glue/mpich2/Makefile config.status: creating mpi-io/glue/mpich1/Makefile config.status: creating mpi-io/glue/default/Makefile config.status: creating common/dataloop/Makefile config.status: creating adio/include/romioconf.h config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: ===== configuring src/pmi/simple ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/pmi/simple/configure '-prefix=/home/Jim/mpich2-install' --disable-option-checking RUNNING CONFIGURE FOR THE SIMPLE PMI checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for strings.h... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncasecmp... yes checking for sys/types.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating pmiconf.h configure: ===== done with src/pmi/simple configure ===== configure: ===== configuring src/pm/hydra ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/configure '-prefix=/home/Jim/mpich2-install' --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of unsigned long... 4 checking for size_t... yes checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking for doxygen... /usr/bin/doxygen checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for netdb.h... (cached) yes checking winsock2.h usability... no checking winsock2.h presence... yes configure: WARNING: winsock2.h: present but cannot be compiled configure: WARNING: winsock2.h: check for missing prerequisite headers? configure: WARNING: winsock2.h: see the Autoconf documentation configure: WARNING: winsock2.h: section "Present But Cannot Be Compiled" configure: WARNING: winsock2.h: proceeding with the preprocessor's result configure: WARNING: winsock2.h: in the future, the compiler will take precedence checking for winsock2.h... yes checking windows.h usability... yes checking windows.h presence... yes checking for windows.h... yes checking for socket in -lsocket... no checking for gethostbyname in -lnsl... no checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for getifaddrs... yes checking for fcntl... yes checking for alarm... yes checking for environ in unistd.h... yes checking boot-strap server... ssh,rsh,fork,slurm,ll,lsf,sge,persist checking resource management kernel... none,pbs checking process manager... pmiserv checking user interface... mpich checking desired process binding libraries... hwloc,plpa configure: ===== configuring tools/bind/hwloc/hwloc ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/configure '-prefix=/home/Jim/mpich2-install' '--disable-option-checking' 'CC=gcc' 'CFLAGS= -O2 ' 'LDFLAGS=' 'LDFLAGS= ' 'LIBS=' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' --disable-option-checking ### ### Configuring hwloc distribution tarball ### Startup tests ### checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking target system type... i686-pc-cygwin checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar checking for hwloc version... 1.0.2rc3-1 checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes ### ### Configuring hwloc core ### checking hwloc building mode... standalone configure: hwloc builddir: /tmp/Jim/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc configure: hwloc srcdir: /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc configure: Detected VPATH build checking if want hwloc maintainer support... disabled checking for hwloc directory prefix... (none) checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... -std=gnu99 checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking size of void *... 4 checking which OS support to include... Windows checking which CPU support to include... x86_32 checking whether diff accepts -u... -u checking size of unsigned long... 4 checking size of unsigned int... 4 checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... no checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... no checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... no checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility... no checking enable symbol visibility... no checking for inline compatibility keyword... __inline__ checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for stdint.h... (cached) yes checking for wchar_t... yes checking for putwc... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for setlocale... yes checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking for nl_langinfo... yes checking curses.h usability... no checking curses.h presence... no checking for curses.h... no checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for main in -lgdi32... yes checking windows.h usability... yes checking windows.h presence... yes checking for windows.h... yes checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for sysctl... no checking for sysctlbyname... no checking whether function sched_setaffinity is declared... no checking for working CPU_SET... no checking for working CPU_SET_S... no checking for KERRIGHED... no checking for lib... no checking for bash... /usr/bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... no checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking whether numa_bitmask_alloc is declared... no checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... no checking whether pthread_getaffinity_np is declared... no checking for sched_setaffinity... no checking for sys/cpuset.h... no checking for library containing pthread_getthrds_np... no checking for cpuid... yes checking for X... libraries , headers ### ### Configuring hwloc documentation ### checking if this is a developer build... no (doxygen generation is optional) checking for doxygen... /usr/bin/doxygen checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for fig2dev... /usr/bin/fig2dev checking if can build doxygen docs... yes checking for w3m... /usr/bin/w3m checking for lynx... /usr/bin/lynx checking if can build top-level README... yes checking if will build doxygen docs... no checking if will install doxygen docs... no checking whether to enable "picky" compiler mode... no (default) ### ### Configuring hwloc command line utilities ### checking for CAIRO... yes checking for cairo_fill... yes checking for final CAIRO support... yes checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Xlib.h... yes checking X11/Xutil.h usability... yes checking X11/Xutil.h presence... yes checking for X11/Xutil.h... yes checking for XOpenDisplay in -lX11... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking for XOpenDisplay in -lX11... (cached) yes checking for XML... yes checking for xmlNewDoc... yes checking for final XML support... yes checking for xmllint... xmllint ### ### Configuring hwloc tests ### checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking for as... as checking for dlltool... dlltool checking for objdump... (cached) objdump checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/doxygen-config.cfg config.status: creating utils/Makefile config.status: creating hwloc.pc config.status: creating tests/Makefile config.status: creating tests/linux/Makefile config.status: creating tests/xml/Makefile config.status: creating tests/ports/Makefile config.status: creating tests/linux/gather-topology.sh config.status: creating tests/linux/test-topology.sh config.status: creating tests/xml/test-topology.sh config.status: creating utils/test-hwloc-distrib.sh config.status: creating include/private/config.h config.status: creating include/hwloc/config.h config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology.c to tests/ports/topology.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/traversal.c to tests/ports/traversal.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-synthetic.c to tests/ports/topology-synthetic.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-solaris.c to tests/ports/topology-solaris.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-aix.c to tests/ports/topology-aix.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-osf.c to tests/ports/topology-osf.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-windows.c to tests/ports/topology-windows.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-darwin.c to tests/ports/topology-darwin.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-freebsd.c to tests/ports/topology-freebsd.c config.status: linking /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/hwloc/hwloc/src/topology-hpux.c to tests/ports/topology-hpux.c config.status: executing depfiles commands config.status: executing chmoding-scripts commands config.status: executing libtool commands configure: ===== done with tools/bind/hwloc/hwloc configure ===== configure: ===== configuring tools/bind/plpa/plpa ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/pm/hydra/tools/bind/plpa/plpa/configure '-prefix=/home/Jim/mpich2-install' '--disable-option-checking' 'CC=gcc' 'CFLAGS= -O2 ' 'LDFLAGS=' 'LDFLAGS= ' 'LIBS=' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for PLPA version... 1.3.2 checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking whether to enable "picky" compiler mode... no (default) checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for bison... bison -y checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for syscall... no configure: error: Cannot continue configure: ===== done with tools/bind/plpa/plpa configure ===== checking available process binding libraries... checking checkpointing library... none checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... none checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating tools/bootstrap/include/bsci.h config.status: creating tools/rmk/src/rmki_init.c config.status: creating tools/rmk/include/rmki.h config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== configure: ===== configuring src/mpe2 ===== configure: executing: /home/Jim/libraries/mpich2-1.3.1/src/mpe2/configure '-prefix=/home/Jim/mpich2-install' --disable-option-checking Configuring MPE Profiling System with '-prefix=/home/Jim/mpich2-install' '--disable-option-checking' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH This MPE build is part of the MPICH2 build checking for leftover Makefiles in subpackages ... none checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether MPI_CC has been set ... /tmp/Jim/mpich2-1.3.1/bin/mpicc checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether MPI_F77 has been set ... /tmp/Jim/mpich2-1.3.1/bin/mpif77 checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lpthread -lgfortranbegin -lgfortran -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether C can link with -L/usr/lib/gcc/i686-pc-cygwin/4.3.4 -L/usr/lib/gcc/i686-pc-cygwin/4.3.4/../../.. -lpthread -lgfortranbegin -lgfortran -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32... yes checking for linker for Fortran main programs... Use Fortran to link programs checking whether Fortran 77 and C objects are compatible... yes checking for Fortran 77 name mangling... lower underscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking for Fortran 77 flag for library directories... -L checking for include directory flag for Fortran... -I checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ranlib... ranlib checking whether install breaks libraries... no configure: creating ./config.status config.status: creating Makefile config.status: creating sbin/mpetestlink config.status: creating sbin/mpetestexec config.status: creating sbin/mpetestexeclog config.status: creating sbin/mpeinstall config.status: creating sbin/mpecheckinstall config.status: WARNING: '/home/Jim/libraries/mpich2-1.3.1/src/mpe2/sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting config.status: creating sbin/mpecheckbuild config.status: creating etc/mpe_help.conf config.status: creating etc/mpe_f77env.conf config.status: creating mpe_conf.h config.status: executing default-1 commands === configuring in src/misc (/tmp/Jim/mpich2-1.3.1/src/mpe2/src/misc) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/misc/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/misc Configuring MPE Miscellaneous Library with '--disable-option-checking' '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/misc' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for dbx... no checking for gdb... /usr/bin/gdb checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sysinfo... no checking for uname... yes checking for gethostbyname... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/systeminfo.h usability... no checking sys/systeminfo.h presence... no checking for sys/systeminfo.h... no checking for sys/types.h... (cached) yes checking for sighandler_t... yes checking for kill... yes checking whether kill needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dbxerr.c config.status: creating mpe_misc_conf.h === configuring in src/callstack (/tmp/Jim/mpich2-1.3.1/src/mpe2/src/callstack) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/callstack/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/callstack Configuring MPE CallStack Library with '--disable-option-checking' '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/callstack' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking execinfo.h usability... no checking execinfo.h presence... no checking for execinfo.h... no checking ucontext.h usability... no checking ucontext.h presence... no checking for ucontext.h... no checking for fdopen... yes checking whether fdopen needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/mpe_callstack.h config.status: creating etc/mpe_callstack_ldflags.conf config.status: creating bin/bt2line config.status: creating mpe_callstack_conf.h config.status: executing default-1 commands === configuring in src/logging (/tmp/Jim/mpich2-1.3.1/src/mpe2/src/logging) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/logging/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/logging Configuring MPE Logging Library and Tools with '--disable-option-checking' '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/logging' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking for sys/stat.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for header that defines C99 integer types, intXX_t ... checking for inttypes.h... (cached) yes checking whether defines the PRIdXX macros ... yes checking if can be behind system headers ... yes checking size of void *... 4 checking for address-sized integer ... CLOG_int32_t checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for gethostname... yes checking whether gethostname needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for srand48... yes checking whether srand48 needs a declaration... no checking for lrand48... yes checking whether lrand48 needs a declaration... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for O_LARGEFILE for open() ... no checking for O_BINARY for open() ... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_mutex_lock in -lpthread... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/clog_inttypes.h config.status: creating include/mpi_null.h config.status: creating include/mpe_log_thread.h config.status: creating etc/mpe_log.conf config.status: creating etc/mpe_nolog.conf config.status: creating etc/mpe_log_postlib.conf config.status: creating mpe_logging_conf.h === configuring in src/wrappers (/tmp/Jim/mpich2-1.3.1/src/mpe2/src/wrappers) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/wrappers/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/wrappers Configuring MPE Wrapper Libraries For MPI with '--disable-option-checking' '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/wrappers' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for working alloca.h... yes checking for alloca... yes checking for stdarg is correct... yes checking if compiler accepts prototypes ... yes checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for safe PMPI invocations ... no checking for the value of MPI_STATUS_SIZE ... 5 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_f77env.conf config.status: creating etc/mpe_mpilog.conf config.status: creating etc/mpe_mpitrace.conf config.status: creating mpe_wrappers_conf.h === configuring in src/graphics (/tmp/Jim/mpich2-1.3.1/src/mpe2/src/graphics) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/graphics/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/graphics Configuring MPE X Graphics Library with '--disable-option-checking' '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/graphics' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for X... libraries , headers checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of void *... 4 checking for long pointer... no checking for system... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating contrib/life/Makefile config.status: creating contrib/mandel/Makefile config.status: creating contrib/mastermind/Makefile config.status: creating contrib/test/Makefile config.status: creating etc/mpe_mpianim.conf config.status: creating etc/mpe_graphics.conf config.status: creating mpe_graphics_conf.h === configuring in src/collchk (/tmp/Jim/mpich2-1.3.1/src/mpe2/src/collchk) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/collchk/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/collchk Configuring MPE Collective and Datatype Checking Library with '--disable-option-checking' '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/collchk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for gcc... gcc checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for working alloca.h... yes checking for alloca... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_mpicheck.conf config.status: creating mpe_collchk_conf.h === configuring in src/slog2sdk (/tmp/Jim/mpich2-1.3.1/src/mpe2/src/slog2sdk) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/slog2sdk/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/slog2sdk Configuring SLOG2SDK with '--disable-option-checking' '--prefix=/home/Jim/mpich2-install' 'MPI_CC=/tmp/Jim/mpich2-1.3.1/bin/mpicc' 'MPI_F77=/tmp/Jim/mpich2-1.3.1/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread ' 'CPPFLAGS= -I/tmp/Jim/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpl/include -I/home/Jim/libraries/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/openpa/src -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/datatype -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/datatype -I/tmp/Jim/mpich2-1.3.1/src/mpid/common/locks -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/common/locks -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/Jim/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/Jim/libraries/mpich2-1.3.1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/Jim/mpich2-1.3.1/src/util/wrappers -I/home/Jim/libraries/mpich2-1.3.1/src/util/wrappers' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/Jim/libraries/mpich2-1.3.1/src/mpe2/src/slog2sdk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking if CLASSPATH is set... yes checking if CLASSPATH contains current path... no, prepend . to CLASSPATH checking build system type... i686-pc-cygwin checking host system type... i686-pc-cygwin checking for java in user's PATH... not found checking for java in user's PATH... not found configure: WARNING: No Java Virtual Machine can be found anywhere! MPE2: "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" have been configured configure: ===== done with src/mpe2 configure ===== checking size of OPA_ptr_t... 4 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes Running Configure for Fortran 90 Type routines checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for fgrep... /usr/bin/grep -F checking for an ANSI C-conforming const... yes checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for linker for Fortran main programs... Use Fortran to link programs checking for Fortran 77 name mangling... lower underscore checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, configure: creating ./config.status config.status: creating mpif90model.h configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/include/Makefile config.status: creating src/include/mpich2info.h config.status: creating mpich2-doxygen config.status: creating src/include/mpichtimer.h config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f77/setbot.c config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/packaging/Makefile config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc config.status: creating src/packaging/pkgconfig/Makefile config.status: creating src/packaging/envmods/mpich2.module config.status: WARNING: '/home/Jim/libraries/mpich2-1.3.1/src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting config.status: creating src/packaging/envmods/Makefile config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77 config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90 config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/env/Makefile config.status: creating src/util/createshlib config.status: creating src/mpi/Makefile config.status: creating src/mpi/attr/Makefile config.status: creating src/mpi/coll/Makefile config.status: creating src/mpi/comm/Makefile config.status: creating src/mpi/datatype/Makefile config.status: creating src/mpi/debugger/Makefile config.status: creating src/mpi/errhan/Makefile config.status: creating src/mpi/group/Makefile config.status: creating src/mpi/init/Makefile config.status: creating src/mpi/misc/Makefile config.status: creating src/mpi/pt2pt/Makefile config.status: creating src/mpi/rma/Makefile config.status: creating src/mpi/spawn/Makefile config.status: creating src/mpi/timer/Makefile config.status: creating src/mpi/topo/Makefile config.status: creating src/mpid/Makefile config.status: creating src/mpid/common/Makefile config.status: creating src/mpid/common/datatype/Makefile config.status: creating src/mpid/common/datatype/dataloop/Makefile config.status: creating src/pm/Makefile config.status: creating src/pmi/Makefile config.status: creating src/pmi/simple/Makefile config.status: creating src/nameserv/Makefile config.status: creating src/nameserv/file/Makefile config.status: creating src/nameserv/mpd/Makefile config.status: creating src/nameserv/pmi/Makefile config.status: creating src/nameserv/test/Makefile config.status: creating src/util/Makefile config.status: creating src/util/info/Makefile config.status: creating src/util/instrm/Makefile config.status: creating src/util/thread/Makefile config.status: creating src/util/mem/Makefile config.status: creating src/util/msgs/Makefile config.status: creating src/util/param/Makefile config.status: creating src/util/dbg/Makefile config.status: creating src/util/dbg/getfuncstack config.status: creating src/util/osserv/Makefile config.status: creating src/util/procmap/Makefile config.status: creating src/util/other/Makefile config.status: creating src/include/mpi.h config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/basic/Makefile config.status: creating test/commands/Makefile config.status: creating test/commands/cmdtests config.status: creating test/mpid/Makefile config.status: creating test/mpid/ch3/Makefile config.status: creating test/util/timer/Makefile config.status: creating examples/Makefile config.status: creating examples/f77/Makefile config.status: creating examples/f90/Makefile config.status: creating examples/cxx/Makefile config.status: creating src/util/logging/Makefile config.status: creating src/util/logging/common/Makefile config.status: creating doc/Makefile config.status: creating doc/mansrc/Makefile config.status: creating doc/mansrc/createhtmlindex config.status: creating doc/refman/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/design/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/windev/Makefile config.status: creating src/include/mpichconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands config.status: executing default-6 commands config.status: executing default-7 commands config.status: executing default-8 commands config.status: executing default-9 commands config.status: executing default-10 commands config.status: executing default-11 commands config.status: executing default-12 commands config.status: executing default-13 commands config.status: executing default-14 commands === configuring in test/mpi (/tmp/Jim/mpich2-1.3.1/test/mpi) configure: running /bin/sh /home/Jim/libraries/mpich2-1.3.1/test/mpi/configure --disable-option-checking '--prefix=/home/Jim/mpich2-install' --cache-file=/dev/null --srcdir=/home/Jim/libraries/mpich2-1.3.1/test/mpi RUNNING CONFIGURE FOR MPI TESTS checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for C compiler default output file name... a.exe checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... .exe checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /tmp/Jim/mpich2-1.3.1/bin/mpicc accepts -g... yes checking for /tmp/Jim/mpich2-1.3.1/bin/mpicc option to accept ISO C89... none needed checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking how to run the C preprocessor... /tmp/Jim/mpich2-1.3.1/bin/mpicc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... none required checking for library containing pthread_barrier_init... no checking for pthread_create... yes checking for pthread_yield... no checking for pthread_barrier_init... no checking for pthread_barrier_wait... no checking whether struct hostent contains h_addr_list... no checking for major version of MPI... 2 checking for minor version of MPI... 2 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /tmp/Jim/mpich2-1.3.1/bin/mpif77 accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking for Fortran 77 name mangling... lower underscore checking for Fortran libraries needed for getarg... none needed checking whether Fortran has pointer declaration... no checking whether we are using the GNU Fortran compiler... yes checking whether /tmp/Jim/mpich2-1.3.1/bin/mpif90 accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (/tmp/Jim/mpich2-1.3.1/bin/mpif90 -nativelinking ) works... yes checking whether the Fortran 90 compiler (/tmp/Jim/mpich2-1.3.1/bin/mpif90 -nativelinking ) is a cross-compiler... no checking whether Fortran 90 has Cray-style pointer declaration... no checking for Fortran flag needed to allow free-form source... none checking whether we are using the GNU C++ compiler... yes checking whether /tmp/Jim/mpich2-1.3.1/bin/mpicxx accepts -g... yes checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... 4 checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... int checking for perl... /usr/bin/perl configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/spawn/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f90/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed.