Configuring MPICH2 version 1.0.5 with 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' Running on system: Linux titan 2.6.17-2-amd64 #1 SMP Wed Sep 13 17:49:33 CEST 2006 x86_64 GNU/Linux Executing mpich2prereq in /var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3 with Executing mpich2prereq in /var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock sourcing /var/root/mpi/mpich2-1.0.5p3/src/pm/mpd/mpich2prereq sourcing /var/root/mpi/mpich2-1.0.5p3/src/pm/mpd/setup_pm checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for type of weak symbol support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking for multiple weak symbol support... yes checking whether we are using the GNU Fortran 77 compiler... no checking whether pgf90 accepts -g... yes checking how to get verbose linking output from pgf90... -v checking for Fortran libraries of pgf90... -L/usr/pgi/linux86-64/6.1/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.1.2/ -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lm checking whether C can link with -L/usr/pgi/linux86-64/6.1/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.1.2/ -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lm... yes checking for linker for Fortran main programs... Use Fortran to link programs checking for Fortran 77 name mangling... lower underscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking that f works as the extension for Fortran 90 program... yes checking whether we are using the GNU Fortran 90 compiler... no checking whether pgf90 accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (pgf90 ) works... yes checking whether the Fortran 90 compiler (pgf90 ) is a cross-compiler... no checking whether Fortran 90 works with Fortran 77... yes checking whether Fortran accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking for which Fortran libraries are needed to link C with Fortran... -L/usr/pgi/linux86-64/6.1/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.1.2/ -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl checking whether Fortran compiler processes .F files with C preprocessor... yes checking that f works as the extension for Fortran 90 program... yes checking whether we are using the GNU Fortran 90 compiler... (cached) no checking whether pgf90 accepts -g... (cached) yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (pgf90 ) works... yes checking whether the Fortran 90 compiler (pgf90 ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking whether Fortran 90 accepts f90 suffix... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking for f90 compiler vendor... pgi checking for c++... pgCC checking whether we are using the GNU C++ compiler... no checking whether pgCC accepts -g... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for etags... no checking for killall... killall checking whether global variables handled properly... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking whether install breaks libraries... no checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no checking for bash... /bin/sh checking whether /bin/sh supports arrays... yes checking for doctext... false checking for location of doctext style files... unavailable checking for an ANSI C-conforming const... yes checking for volatile... yes checking for restrict... __restrict checking for inline... inline checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking for gcc... gcc Using gcc to determine dependencies checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types. checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking how to run the C preprocessor... pgcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for char... yes checking size of char... 1 checking for short... yes checking size of short... 2 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long long... yes checking size of long long... 8 checking for float... yes checking size of float... 4 checking for double... yes checking size of double... 8 checking for long double... yes checking size of long double... 8 checking for wchar_t... yes checking size of wchar_t... 4 checking for void *... yes checking size of void *... 8 checking for size of float int... 8 checking for size of double int... 12 checking for size of long int... 12 checking for size of short int... 6 checking for size of 2 int... 8 checking for size of long double int... 12 checking for sys/bitypes.h... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes checking for C type matching Fortran integer... int checking for size of MPI_Status... 20 checking for values of Fortran logicals... True is -1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for bool... yes checking size of bool... 1 checking how to run the C++ preprocessor... pgCC -E checking for complex... yes checking for Complex... yes checking size of Complex... 8 checking for DoubleComplex... yes checking size of DoubleComplex... 16 checking for LongDoubleComplex... yes checking size of LongDoubleComplex... 16 checking if char * pointers use byte addresses... yes checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for size of MPI_BSEND_OVERHEAD... 95 checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for stddef.h... yes checking for errno.h... yes checking for sys/socket.h... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for endian.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... yes checking for strerror... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for va_copy... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for gettimeofday... yes sourcing /var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/setup_device RUNNING SETUP_DEVICE FOR THE CH3 DEVICE sourcing /var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/setup_channel RUNNING SETUP_CHANNEL FOR THE SOCK CHANNEL sourcing /var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/setup RUNNING SETUP FOR THE SOCK INTERFACE checking for pthread.h... yes checking for pthread_yield... no checking for library containing pthread_key_create... -lpthread checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes RUNNING CONFIGURE FOR CH3 DEVICE checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking how to run the C preprocessor... pgcc -E checking for assert.h... yes checking for limits.h... yes checking for string.h... yes checking for sys/types.h... yes checking for sys/uio.h... yes checking for uuid/uuid.h... no checking for time.h... yes checking for ctype.h... yes checking for unistd.h... yes checking for arpa/inet.h... yes checking for sys/socket.h... yes checking for net/if.h... yes checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... (cached) yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... (cached) yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... (cached) yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for library containing uuid_generate... no checking whether CPP accepts variable length argument lists... yes checking whether byte ordering is bigendian... no checking whether we can use struct ifconf... yes checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long long... yes checking size of long long... 8 checking for void *... yes checking size of void *... 8 checking for etags... true configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating util/sock/Makefile config.status: creating util/shm/Makefile config.status: creating util/shmbase/Makefile config.status: creating channels/Makefile config.status: creating localdefs config.status: creating include/mpid_thread.h config.status: creating include/mpidi_ch3_conf.h config.status: executing default-1 commands copying /var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/../common/thread/mpid_thread_mpe.c to src/mpid_thread.c configure: configuring in channels/sock configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock RUNNING CONFIGURE FOR THE SOCK CHANNEL checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for net/if.h... yes checking how to run the C preprocessor... pgcc -E checking for netdb.h... yes checking for sys/ioctl.h... yes checking for sys/socket.h... yes checking for sys/sockio.h... no checking for sys/types.h... yes checking for errno.h... yes checking for netinet/in.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating localdefs config.status: creating include/mpidi_ch3i_sock_conf.h RUNNING CONFIGURE FOR THE SOCK INTERFACE checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpidu_sock_conf.h configure: configuring in poll configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll RUNNING CONFIGURE FOR THE POLL IMPLEMENTATION OF SOCK checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for inline... inline checking for poll... yes checking how to run the C preprocessor... pgcc -E checking for assert.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for limits.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for netinet/tcp.h... yes checking for poll.h... yes checking for stdlib.h... yes checking for sys/param.h... yes checking for sys/poll.h... yes checking for sys/types.h... yes checking for sys/uio.h... yes checking for unistd.h... yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking whether socklen_t is defined (in sys/socket.h if present)... yes checking for etags... true configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpidu_socki_conf.h Configuring with args --prefix=NONE CC=pgcc CXX=pgCC F77=pgf90 F90=pgf90 checking for architecture... LINUX ROMIO home directory is /var/root/mpi/mpich2-1.0.5p3/src/mpi/romio checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking whether we are using the GNU Fortran 77 compiler... no checking whether pgf90 accepts -g... yes checking how to run the C preprocessor... pgcc -E checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking how to run the C preprocessor... pgcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for int... yes checking size of int... 4 checking for void *... yes checking size of void *... 8 checking for int large enough for pointers... no checking for long long... yes checking size of long long... 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH2 checking for weak symbol support... pragma weak checking that weak symbols are visible to other files... yes checking that the compiler correctly implements weak symbols... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for restrict... __restrict setting CC to pgcc setting F77 to pgf90 setting TEST_CC to /var/root/mpi/mpich2-1.0.5p3/bin/mpicc setting TEST_F77 to /var/root/mpi/mpich2-1.0.5p3/bin/mpif77 setting CFLAGS to -O -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi-io/Makefile config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating adio/common/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating mpi-io/fortran/Makefile config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating mpi-io/glue/mpich2/Makefile config.status: creating mpi-io/glue/mpich1/Makefile config.status: creating mpi-io/glue/default/Makefile config.status: creating adio/include/romioconf.h config.status: executing default-1 commands RUNNING CONFIGURE FOR THE SIMPLE PMI checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking how to run the C preprocessor... pgcc -E checking for unistd.h... yes checking for string.h... yes checking for stdlib.h... yes checking for sys/socket.h... yes checking for strings.h... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for sys/types.h... yes checking for sys/param.h... yes checking for sys/socket.h... (cached) yes checking for netinet/in.h... yes checking for netinet/tcp.h... yes checking for sys/un.h... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating pmiconf.h Configuring with args --prefix=NONE CC=pgcc CXX=pgCC F77=pgf90 F90=pgf90 checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking whether make sets $(MAKE)... yes checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install /usr/bin/install -c works... yes Using INSTALL=/usr/bin/install -c checking for totalview... no checking for python2.5... no checking for python2.4... python2.4 checking for python2.3... python2.3 checking for python2.2... no checking for python2... no checking for python... python checking that python2.4 is a valid python version... yes checking that the cPickle module is available for python2.4... yes checking for library containing socket... none required checking how to run the C preprocessor... pgcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for strings.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for putenv... yes checking for socket... yes configure: creating ./config.status config.status: creating Makefile config.status: creating mpdconf.h Configuring MPE Profiling System with '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH This MPE build is part of the MPICH2 build checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking whether MPI_CC has been set ... /var/root/mpi/mpich2-1.0.5p3/bin/mpicc checking whether we are using the GNU Fortran 77 compiler... no checking whether pgf90 accepts -g... yes checking whether MPI_F77 has been set ... /var/root/mpi/mpich2-1.0.5p3/bin/mpif77 checking how to get verbose linking output from pgf90... -v checking for Fortran libraries of pgf90... -lpthread -lrt' -lrt -L/usr/pgi/linux86-64/6.1/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.1.2/ -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lm checking whether C can link with -lpthread -lrt' -lrt -L/usr/pgi/linux86-64/6.1/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.1.2/ -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lm... no checking which libraries can be used... -lpthread -lrt -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lm checking for Fortran 77 name mangling... lower underscore checking for Fortran 77 flag for library directories... -L checking for include directory flag for Fortran... -I checking how to run the C preprocessor... pgcc -E checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ranlib... ranlib checking whether install breaks libraries... no checking for leftover Makefiles in subpackages ... none configure: creating ./config.status config.status: creating Makefile config.status: creating sbin/mpetestlink config.status: creating sbin/mpetestexec config.status: creating sbin/mpetestexeclog config.status: creating sbin/mpeinstall config.status: creating sbin/mpecheckinstall config.status: creating sbin/mpecheckbuild config.status: creating etc/mpe_help.conf config.status: creating etc/mpe_f77env.conf config.status: creating mpe_conf.h config.status: executing default-1 commands configure: configuring in src/misc configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/misc/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/misc Configuring MPE Miscellaneous Library with '--prefix=/usr/local' '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/misc' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... pgcc -E checking for dbx... no checking for gdb... /usr/bin/gdb checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sysinfo... yes checking for uname... yes checking for gethostbyname... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/systeminfo.h usability... no checking sys/systeminfo.h presence... no checking for sys/systeminfo.h... no checking for sighandler_t... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dbxerr.c config.status: creating mpe_misc_conf.h configure: configuring in src/logging configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/logging/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/logging Configuring MPE Logging Library and Tools with '--prefix=/usr/local' '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/logging' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... pgcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for header that defines C99 integer types, intXX_t ... checking for inttypes.h... (cached) yes checking whether defines the PRIdXX macros ... yes checking if can be behind system headers ... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for snprintf... yes checking whether snprintf needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for srand48... yes checking whether srand48 needs a declaration... no checking for lrand48... yes checking whether lrand48 needs a declaration... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGE_FILES value needed for large files... no checking whether _LARGEFILE64_SOURCE is needed ... no checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for O_BINARY for open() ... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/clog_inttypes.h config.status: creating etc/mpe_log.conf config.status: creating etc/mpe_nolog.conf config.status: creating mpe_logging_conf.h configure: configuring in src/wrappers configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/wrappers/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/wrappers Configuring MPE wrapper Library For MPI with '--prefix=/usr/local' '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/wrappers' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... pgcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for working alloca.h... yes checking for alloca... yes checking for stdarg is correct... yes checking if compiler accepts prototypes ... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for safe PMPI invocations ... no checking for the value of MPI_STATUS_SIZE ... 5 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_f77env.conf config.status: creating etc/mpe_mpilog.conf config.status: creating etc/mpe_mpitrace.conf config.status: creating mpe_wrappers_conf.h configure: configuring in src/graphics configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/graphics/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/graphics Configuring MPE X Graphics Library with '--prefix=/usr/local' '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/graphics' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... pgcc -E checking for X... no configure: WARNING: Could not find appropriate X windows libraries. MPE routines that make use of X11 graphics will NOT be built unless you put X windows libraries in your path and reconfigure! configure: configuring in src/collchk configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/collchk/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/collchk Configuring MPE Collective and Datatype Checking Library with '--prefix=/usr/local' '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/collchk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... pgcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for working alloca.h... yes checking for alloca... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_mpicheck.conf config.status: creating mpe_collchk_conf.h configure: configuring in src/slog2sdk configure: running /bin/sh '/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/slog2sdk/configure' --prefix=/usr/local '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' --cache-file=/dev/null --srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/slog2sdk Configuring SLOG2SDK with '--prefix=/usr/local' '--prefix=NONE' 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' 'CFLAGS=' 'CPPFLAGS= -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/datatype -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/ch3/channels/sock/include -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll -I/var/root/mpi/mpich2-1.0.5p3/src/mpid/common/sock/poll' 'FFLAGS=' 'MPI_CC=/var/root/mpi/mpich2-1.0.5p3/bin/mpicc' 'MPI_F77=/var/root/mpi/mpich2-1.0.5p3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/var/root/mpi/mpich2-1.0.5p3/src/mpe2/src/slog2sdk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking if CLASSPATH is set... no, good to go checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for java in user's PATH... not found checking for java in known locations... not found configure: WARNING: No Java Virtual Machine can be found anywhere! MPE2: "src/misc" "src/logging" "src/wrappers" "src/collchk" have been configured checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran77... yes checking whether the Fortran Offset type works with Fortran90... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/include/Makefile config.status: creating src/include/mpichtimer.h config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/env/mpicc config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77 config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90 config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/mpich2version config.status: creating src/env/parkill config.status: creating src/env/Makefile config.status: creating src/util/createshlib config.status: creating src/mpi/Makefile config.status: creating src/mpi/attr/Makefile config.status: creating src/mpi/coll/Makefile config.status: creating src/mpi/comm/Makefile config.status: creating src/mpi/datatype/Makefile config.status: creating src/mpi/debugger/Makefile config.status: creating src/mpi/errhan/Makefile config.status: creating src/mpi/group/Makefile config.status: creating src/mpi/init/Makefile config.status: creating src/mpi/misc/Makefile config.status: creating src/mpi/pt2pt/Makefile config.status: creating src/mpi/rma/Makefile config.status: creating src/mpi/spawn/Makefile config.status: creating src/mpi/timer/Makefile config.status: creating src/mpi/topo/Makefile config.status: creating src/mpid/Makefile config.status: creating src/mpid/common/Makefile config.status: creating src/mpid/common/datatype/Makefile config.status: creating src/mpid/common/locks/Makefile config.status: creating src/pm/Makefile config.status: creating src/pmi/Makefile config.status: creating src/nameserv/Makefile config.status: creating src/nameserv/file/Makefile config.status: creating src/nameserv/mpd/Makefile config.status: creating src/nameserv/pmi/Makefile config.status: creating src/nameserv/test/Makefile config.status: creating src/util/Makefile config.status: creating src/util/info/Makefile config.status: creating src/util/instrm/Makefile config.status: creating src/util/thread/Makefile config.status: creating src/util/thread/mpe_thread.h config.status: creating src/util/mem/Makefile config.status: creating src/util/msgs/Makefile config.status: creating src/util/param/Makefile config.status: creating src/util/dbg/Makefile config.status: creating src/util/dbg/getfuncstack config.status: creating src/util/osserv/Makefile config.status: creating src/include/mpi.h config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/basic/Makefile config.status: creating test/commands/Makefile config.status: creating test/commands/cmdtests config.status: creating test/mpid/Makefile config.status: creating test/mpid/ch3/Makefile config.status: creating examples/Makefile config.status: creating examples/f77/Makefile config.status: creating examples/f90/Makefile config.status: creating examples/cxx/Makefile config.status: creating src/util/logging/Makefile config.status: creating src/util/logging/common/Makefile config.status: creating doc/Makefile config.status: creating doc/mansrc/Makefile config.status: creating doc/mansrc/createhtmlindex config.status: creating doc/refman/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/design/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/windev/Makefile config.status: creating src/include/mpichconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands copying ./src/util/thread/mpe_thread_posix.c to src/util/thread/mpe_thread.c moving mpe_thread.h to src/include config.status: executing default-5 commands config.status: executing default-6 commands config.status: executing default-7 commands config.status: executing default-8 commands config.status: executing default-9 commands config.status: executing default-10 commands config.status: executing default-11 commands config.status: executing default-12 commands config.status: executing default-13 commands config.status: executing default-14 commands config.status: executing default-15 commands configure: configuring in test/mpi configure: running /bin/sh './configure' --prefix=/usr/local 'CC=pgcc' 'CXX=pgCC' 'F77=pgf90' 'F90=pgf90' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... no checking for gcc... pgcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ANSI C... none needed checking whether we are using the GNU Fortran 77 compiler... no checking whether pgf90 accepts -g... yes checking whether we are using the GNU C++ compiler... no checking whether pgCC accepts -g... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for restrict... __restrict checking how to run the C preprocessor... pgcc -E checking for unistd.h... yes checking for stdarg.h... yes checking for string.h... yes checking for stdlib.h... yes checking for memory.h... yes Configuring tests for MPICH2 checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking for Fortran 77 name mangling... configure: WARNING: Cannot determine Fortran naming scheme checking for Fortran libraries needed for getarg... none needed checking whether Fortran has pointer declaration... yes checking that f works as the extension for Fortran 90 program... yes checking whether we are using the GNU Fortran 90 compiler... no checking whether pgf90 accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (pgf90 ) works... yes checking whether the Fortran 90 compiler (pgf90 ) is a cross-compiler... no checking whether Fortran 90 has Cray-style pointer declaration... yes checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking for perl... /usr/bin/perl checking for etags... true configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating errors/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f90/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed.