Configuring MPICH2 version 1.0.3 with --prefix=/nfs1/bin/mpich2-install --enable-romio --with-file-system=ufs+nfs+pvfs2 sourcing /home/penggu/mpich2-1.0.3/src/pm/mpd/setup_pm checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for type of weak symbol support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking for multiple weak symbol support... yes checking for g77... g77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking how to get verbose linking output from g77... -v checking for Fortran libraries of g77... -L/home/penggu/pvfs2/lib -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3 -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3/../../.. -lpvfs2 -lpthread -lfrtbegin -lg2c -lm -lgcc_s checking whether C can link with -L/home/penggu/pvfs2/lib -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3 -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3/../../.. -lpvfs2 -lpthread -lfrtbegin -lg2c -lm -lgcc_s... yes checking for linker for Fortran main programs... Use Fortran to link programs checking for Fortran 77 name mangling... lower doubleunderscore checking that f works as the extension for Fortran 90 program... yes checking whether we are using the GNU Fortran 90 compiler... yes checking whether /usr/bin/gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (/usr/bin/gfortran -g -O2 -L/home/penggu/pvfs2/lib) works... yes checking whether the Fortran 90 compiler (/usr/bin/gfortran -g -O2 -L/home/penggu/pvfs2/lib) is a cross-compiler... no checking whether Fortran 90 works with Fortran 77... yes checking whether Fortran accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking for which Fortran libraries are needed to link C with Fortran... none checking whether using gcc and g77 together... yes checking whether Fortran compiler processes .F files with C preprocessor... yes checking that f works as the extension for Fortran 90 program... yes checking whether we are using the GNU Fortran 90 compiler... (cached) yes checking whether /usr/bin/gfortran accepts -g... (cached) yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (/usr/bin/gfortran -g -O2 -L/home/penggu/pvfs2/lib) works... yes checking whether the Fortran 90 compiler (/usr/bin/gfortran -g -O2 -L/home/penggu/pvfs2/lib) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking whether Fortran 90 accepts f90 suffix... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for etags... etags checking for etags argument to specify language... --language=c checking whether global variables handled properly... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking whether install breaks libraries... no checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for perl... /usr/bin/perl checking for doctext... false checking for location of doctext style files... unavailable checking for an ANSI C-conforming const... yes checking for volatile... yes checking for restrict... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether C compiler allows unaligned doubles... yes Using gcc to determine dependencies checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... four checking for max C struct floating point alignment... four checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking for alignment restrictions on pointers... int or better checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for char... yes checking size of char... 1 checking for short... yes checking size of short... 2 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long long... yes checking size of long long... 8 checking for float... yes checking size of float... 4 checking for double... yes checking size of double... 8 checking for long double... yes checking size of long double... 12 checking for wchar_t... yes checking size of wchar_t... 4 checking for void *... yes checking size of void *... 4 checking for size of float int... 8 checking for size of double int... 12 checking for size of long int... 8 checking for size of short int... 6 checking for size of 2 int... 8 checking for size of long double int... 16 checking for sys/bitypes.h... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... no checking for C type matching Fortran integer... int checking for size of MPI_Status... 20 checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 4-byte integers... 4 checking for Fortran 90 integer kind for 8-byte integers... 8 checking if char * pointers use byte addresses... yes checking for size of MPI_BSEND_OVERHEAD... 59 checking for gcc __asm__ and pentium cmpxchgl instruction... yes checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no checking for gcc __asm__ and IA64 xchg4 instruction... no checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for stddef.h... yes checking for errno.h... yes checking for sys/socket.h... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for endian.h... yes checking for sys/uio.h... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for va_copy... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for gettimeofday... yes sourcing /home/penggu/mpich2-1.0.3/src/mpid/ch3/setup_device RUNNING SETUP_DEVICE FOR THE CH3 DEVICE sourcing /home/penggu/mpich2-1.0.3/src/mpid/ch3/channels/sock/setup_channel RUNNING SETUP_CHANNEL FOR THE SOCK CHANNEL sourcing /home/penggu/mpich2-1.0.3/src/mpid/common/sock/setup RUNNING SETUP FOR THE SOCK INTERFACE checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes RUNNING CONFIGURE FOR CH3 DEVICE checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for assert.h... yes checking for limits.h... yes checking for string.h... yes checking for sys/types.h... yes checking for sys/uio.h... yes checking for uuid/uuid.h... yes checking for time.h... yes checking for ctype.h... yes checking for unistd.h... yes checking for arpa/inet.h... yes checking for sys/socket.h... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for library containing uuid_generate... -luuid checking whether CPP accepts variable length argument lists... yes checking for etags... etags configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating util/sock/Makefile config.status: creating util/shm/Makefile config.status: creating channels/Makefile config.status: creating localdefs config.status: creating include/mpidi_ch3_conf.h config.status: include/mpidi_ch3_conf.h is unchanged config.status: executing default-1 commands configure: configuring in channels/sock configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpid/ch3/channels/sock/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpid/ch3/channels/sock RUNNING CONFIGURE FOR THE SOCK CHANNEL checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for net/if.h... yes checking how to run the C preprocessor... gcc -E checking for netdb.h... yes checking for sys/ioctl.h... yes checking for sys/socket.h... yes checking for sys/sockio.h... no checking for sys/types.h... yes checking for errno.h... yes checking for netinet/in.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating localdefs config.status: creating include/mpidi_ch3i_sock_conf.h config.status: include/mpidi_ch3i_sock_conf.h is unchanged RUNNING CONFIGURE FOR THE SOCK INTERFACE checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpidu_sock_conf.h config.status: mpidu_sock_conf.h is unchanged configure: configuring in poll configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpid/common/sock/poll/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpid/common/sock/poll RUNNING CONFIGURE FOR THE POLL IMPLEMENTATION OF SOCK checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for inline... inline checking for poll... yes checking how to run the C preprocessor... gcc -E checking for assert.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for limits.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for netinet/tcp.h... yes checking for poll.h... yes checking for stdlib.h... yes checking for sys/param.h... yes checking for sys/poll.h... yes checking for sys/types.h... yes checking for sys/uio.h... yes checking for unistd.h... yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking whether socklen_t is defined... yes checking for etags... etags configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpidu_socki_conf.h config.status: mpidu_socki_conf.h is unchanged Configuring with args --prefix=/nfs1/bin/mpich2-install --enable-romio --with-file-system=ufs+nfs+pvfs2 CFLAGS= -I/home/penggu/pvfs2/include CPPFLAGS= -I/home/penggu/pvfs2/include F90=/usr/bin/gfortran LDFLAGS= -L/home/penggu/pvfs2/lib checking for architecture... LINUX ROMIO home directory is /home/penggu/mpich2-1.0.3/src/mpi/romio checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking how to run the C preprocessor... gcc -E checking for memalign... yes checking Fortran external names Fortran externals are lower case and have two trailing underscores checking for inline... inline checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for int... yes checking size of int... 4 checking for void*... yes checking size of void*... 4 checking for int large enough for pointers... yes checking for long long... yes checking size of long long... 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 Overriding Array test for MPICH2 checking for weak symbol support... pragma weak checking that weak symbols are visible to other files... yes checking whether struct flock compatible with MPI_Offset... yes checking configured file systems... testfs ufs nfs pvfs2 configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking pvfs2.h usability... yes checking pvfs2.h presence... yes checking for pvfs2.h... yes checking for library containing pthread_create... -lpthread checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for restrict... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes setting CC to gcc setting F77 to g77 setting TEST_CC to /home/penggu/mpich2-1.0.3/bin/mpicc setting TEST_F77 to /home/penggu/mpich2-1.0.3/bin/mpif77 setting CFLAGS to -I/home/penggu/pvfs2/include -I/home/penggu/pvfs2/include -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi-io/Makefile config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating adio/common/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating mpi-io/fortran/Makefile config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating mpi-io/glue/mpich2/Makefile config.status: creating mpi-io/glue/mpich1/Makefile config.status: creating mpi-io/glue/default/Makefile config.status: creating adio/include/romioconf.h config.status: executing default-1 commands RUNNING CONFIGURE FOR THE SIMPLE PMI checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for unistd.h... yes checking for string.h... yes checking for stdlib.h... yes checking for sys/socket.h... yes checking for strings.h... yes checking for snprintf... yes checking whether snprintf needs a declaration... no checking for sys/types.h... yes checking for sys/param.h... yes checking for sys/socket.h... (cached) yes checking for netinet/in.h... yes checking for netinet/tcp.h... yes checking for sys/un.h... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined... yes checking whether struct hostent contains h_addr_list... yes configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating pmiconf.h config.status: pmiconf.h is unchanged Configuring with args --prefix=/nfs1/bin/mpich2-install --enable-romio --with-file-system=ufs+nfs+pvfs2 CFLAGS= -I/home/penggu/pvfs2/include CPPFLAGS= -I/home/penggu/pvfs2/include F90=/usr/bin/gfortran LDFLAGS= -L/home/penggu/pvfs2/lib checking for totalview... no checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking whether make sets $(MAKE)... yes checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install /usr/bin/install -c works... yes Using INSTALL=/usr/bin/install -c checking for python2.5... no checking for python2.4... python2.4 checking for python2.3... no checking for python2.2... no checking for python2... python2 checking for python... python checking that python2.4 is a valid python version... yes checking that the cPickle module is available for python2.4... yes checking for library containing socket... none required checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for strings.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for putenv... yes checking for socket... yes configure: creating ./config.status config.status: creating Makefile config.status: creating mpdconf.h Configuring MPE Profiling Libraries with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH This MPE build is part of the MPICH2 build checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking whether to add strict compiler check flags to CFLAGS ... checking whether MPI_CC has been set ... /home/penggu/mpich2-1.0.3/bin/mpicc checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking whether MPI_F77 has been set ... /home/penggu/mpich2-1.0.3/bin/mpif77 checking how to get verbose linking output from g77... -v checking for Fortran libraries of g77... -L/home/penggu/pvfs2/lib -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3 -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3/../../.. -lpvfs2 -lpthread -lrt -lfrtbegin -lg2c -lm -lgcc_s checking whether C can link with -L/home/penggu/pvfs2/lib -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3 -L/usr/lib/gcc-lib/i386-redhat-linux/3.2.3/../../.. -lpvfs2 -lpthread -lrt -lfrtbegin -lg2c -lm -lgcc_s... yes checking for Fortran 77 name mangling... lower doubleunderscore checking for Fortran 77 flag for library directories... -L checking for include directory flag for Fortran... -I checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking for leftover Makefiles in subpackages ... "src/misc" "src/logging" "src/wrappers" "src/graphics" "src/collchk" "src/slog2sdk" cleaned configure: creating ./config.status config.status: creating Makefile config.status: creating sbin/mpeinstall config.status: creating sbin/mpeinstallcheck config.status: creating etc/mpe_help.conf config.status: creating etc/mpe_f77env.conf config.status: creating mpe_conf.h config.status: executing default-1 commands configure: configuring in src/misc configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/misc/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/misc Configuring MPE Miscellaneous Library with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/misc' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for dbx... no checking for gdb... /usr/bin/gdb checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sysinfo... yes checking for uname... yes checking for gethostbyname... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/systeminfo.h usability... no checking sys/systeminfo.h presence... no checking for sys/systeminfo.h... no checking for sighandler_t... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dbxerr.c config.status: creating mpe_misc_conf.h configure: configuring in src/logging configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/logging/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/logging Configuring MPE Logging Library with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/logging' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for srand48... yes checking whether srand48 needs a declaration... no checking for lrand48... yes checking whether lrand48 needs a declaration... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for large file support in 32-bit OS ... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for O_BINARY for open() ... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating etc/mpe_log.conf config.status: creating etc/mpe_nolog.conf config.status: creating mpe_logging_conf.h configure: configuring in src/wrappers configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/wrappers/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/wrappers Configuring MPE wrapper Library For MPI with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/wrappers' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for working alloca.h... yes checking for alloca... yes checking for stdarg is correct... yes checking if compiler accepts prototypes ... yes checking for the value of MPI_STATUS_SIZE ... 5 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_f77env.conf config.status: creating etc/mpe_mpilog.conf config.status: creating etc/mpe_mpitrace.conf config.status: creating mpe_wrappers_conf.h configure: configuring in src/graphics configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/graphics/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/graphics Configuring MPE X Graphics Library with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/graphics' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for X... libraries , headers in standard search path checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for long pointers... no checking for system... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating contrib/life/Makefile config.status: creating contrib/mandel/Makefile config.status: creating contrib/mastermind/Makefile config.status: creating contrib/test/Makefile config.status: creating etc/mpe_mpianim.conf config.status: creating etc/mpe_graphics.conf config.status: creating mpe_graphics_conf.h configure: configuring in src/collchk configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/collchk/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/collchk Configuring MPE Collective and Datatype Checking Library with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/collchk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for working alloca.h... yes checking for alloca... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_mpicheck.conf config.status: creating mpe_collchk_conf.h configure: configuring in src/slog2sdk configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk Configuring SLOG2SDK with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking if CLASSPATH is set... no, good to go checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for java in user's PATH... found /usr/bin/java checking if /usr/bin/java works... yes checking if /usr/bin/java runs simple jar file... yes checking if /usr/bin/java runs simple Swing class... yes checking if /usr/bin/java runs simple Swing jar file... yes checking for Java version... java full version "gcj-1.4.2", i.e. Java 2 SDK checking for cygpath... no checking for leftover Makefiles in subpackages ... none configure: creating ./config.status config.status: creating Makefile config.status: creating sbin/install-package config.status: creating bin/slog2print config.status: creating bin/slog2navigator config.status: creating bin/slog2filter config.status: creating bin/slog2updater config.status: creating bin/logconvertor config.status: creating bin/jumpshot config.status: creating bin/clogprint config.status: creating bin/clogTOslog2 config.status: creating bin/clog2print config.status: creating bin/clog2TOslog2 configure: configuring in trace_sample configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk/trace_sample/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk/trace_sample Configuring TRACE_SAMPLE implementation with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk/trace_sample' 'CXXFLAGS=' 'CXX=c++' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking for void*... yes checking size of void*... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long long... yes checking size of long long... 8 checking for __int64... no checking size of __int64... 0 checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for sed... sed checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc static flag works... yes checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC checking if c++ PIC flag -fPIC works... yes checking if c++ supports -c -o file.o... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for g77 option to produce PIC... -fPIC checking if g77 PIC flag -fPIC works... yes checking if g77 supports -c -o file.o... yes checking whether the g77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for malloc in -lefence... yes checking for strstr... yes checking target system type... i686-pc-linux-gnu checking for javah in user's PATH... found /usr/bin/javah checking if /usr/bin/javah works... unknown! checking if /usr exists... yes checking for include flag... no checking for working javah in user's PATH... not found checking for javah in known locations... not found configure: WARNING: Invalid JNI include dir, exit! configure: configuring in trace_rlog configure: running /bin/sh '/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk/trace_rlog/configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk' --cache-file=/dev/null --srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk/trace_rlog Configuring TRACE_RLOG implementation with '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' 'CC=gcc' 'F77=g77' 'FFLAGS=' 'MPI_CC=/home/penggu/mpich2-1.0.3/bin/mpicc' 'MPI_F77=/home/penggu/mpich2-1.0.3/bin/mpif77' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk' '--cache-file=/dev/null' '--srcdir=/home/penggu/mpich2-1.0.3/src/mpe2/src/slog2sdk/trace_rlog' 'CXXFLAGS=' 'CXX=c++' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for string.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking for void*... yes checking size of void*... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long long... yes checking size of long long... 8 checking for __int64... no checking size of __int64... 0 checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for sed... sed checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc static flag works... yes checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC checking if c++ PIC flag -fPIC works... yes checking if c++ supports -c -o file.o... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for g77 option to produce PIC... -fPIC checking if g77 PIC flag -fPIC works... yes checking if g77 supports -c -o file.o... yes checking whether the g77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for malloc in -lefence... yes checking for strstr... yes checking target system type... i686-pc-linux-gnu checking for javah in user's PATH... found /usr/bin/javah checking if /usr/bin/javah works... unknown! checking if /usr exists... yes checking for include flag... no checking for working javah in user's PATH... not found checking for javah in known locations... not found configure: WARNING: Invalid JNI include dir, exit! configure: WARNING: SLOG2SDK: No sub-package has been configured MPE2: "src/misc" "src/logging" "src/wrappers" "src/graphics" "src/collchk" "src/slog2sdk" have been configured checking the sizeof MPI_Offset... 8 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/include/Makefile config.status: creating src/include/mpichtimer.h config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f90/Makefile config.status: creating src/env/mpicc config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicxx config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpif77 config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif90 config.status: creating src/env/mpif90.conf config.status: creating src/env/mpich2version config.status: creating src/env/Makefile config.status: creating src/util/createshlib config.status: creating src/mpi/Makefile config.status: creating src/mpi/attr/Makefile config.status: creating src/mpi/coll/Makefile config.status: creating src/mpi/comm/Makefile config.status: creating src/mpi/datatype/Makefile config.status: creating src/mpi/debugger/Makefile config.status: creating src/mpi/errhan/Makefile config.status: creating src/mpi/group/Makefile config.status: creating src/mpi/init/Makefile config.status: creating src/mpi/io/Makefile config.status: creating src/mpi/misc/Makefile config.status: creating src/mpi/pt2pt/Makefile config.status: creating src/mpi/rma/Makefile config.status: creating src/mpi/spawn/Makefile config.status: creating src/mpi/timer/Makefile config.status: creating src/mpi/topo/Makefile config.status: creating src/mpid/Makefile config.status: creating src/mpid/common/Makefile config.status: creating src/mpid/common/datatype/Makefile config.status: creating src/mpid/common/locks/Makefile config.status: creating src/pm/Makefile config.status: creating src/pmi/Makefile config.status: creating src/nameserv/Makefile config.status: creating src/nameserv/file/Makefile config.status: creating src/nameserv/mpd/Makefile config.status: creating src/nameserv/pmi/Makefile config.status: creating src/nameserv/test/Makefile config.status: creating src/util/Makefile config.status: creating src/util/info/Makefile config.status: creating src/util/instrm/Makefile config.status: creating src/util/thread/Makefile config.status: creating src/util/thread/mpe_thread.h config.status: creating src/util/mem/Makefile config.status: creating src/util/msgs/Makefile config.status: creating src/util/param/Makefile config.status: creating src/util/dbg/Makefile config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/basic/Makefile config.status: creating test/commands/cmdtests config.status: creating test/mpid/Makefile config.status: creating test/mpid/ch3/Makefile config.status: creating examples/Makefile config.status: creating examples/f77/Makefile config.status: creating examples/f90/Makefile config.status: creating examples/cxx/Makefile config.status: creating examples/mpiexec/Makefile config.status: creating src/util/logging/Makefile config.status: creating src/util/logging/common/Makefile config.status: creating src/util/timing/Makefile config.status: creating doc/Makefile config.status: creating doc/mansrc/Makefile config.status: creating doc/mansrc/createhtmlindex config.status: creating doc/refman/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/design/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/windev/Makefile config.status: creating src/include/mpichconf.h config.status: src/include/mpichconf.h is unchanged config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands copying ./src/util/thread/mpe_thread_none.c to src/util/thread/mpe_thread.c moving mpe_thread.h to src/include config.status: executing default-5 commands config.status: executing default-6 commands config.status: executing default-7 commands config.status: executing default-8 commands config.status: executing default-9 commands config.status: executing default-10 commands config.status: executing default-11 commands config.status: executing default-12 commands config.status: executing default-13 commands config.status: executing default-14 commands configure: configuring in test/mpi configure: running /bin/sh './configure' --prefix=/nfs1/bin/mpich2-install '--prefix=/nfs1/bin/mpich2-install' '--enable-romio' '--with-file-system=ufs+nfs+pvfs2' 'CFLAGS= -I/home/penggu/pvfs2/include' 'CPPFLAGS= -I/home/penggu/pvfs2/include' 'F90=/usr/bin/gfortran' 'LDFLAGS= -L/home/penggu/pvfs2/lib' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking whether long double is supported... yes checking whether long long available... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... yes checking for stdarg.h... yes checking for string.h... yes checking for stdio.h... yes checking for stdlib.h... yes checking for memory.h... yes Configuring tests for MPICH2 checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking for Fortran 77 name mangling... lower doubleunderscore checking for Fortran libraries needed for getarg... none needed checking whether Fortran has pointer declaration... no checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking for perl... /usr/bin/perl checking for etags... etags configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/io/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating errors/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating include/mpitestconf.h config.status: include/mpitestconf.h is unchanged config.status: executing default-1 commands config.status: executing default-2 commands Configuration completed.