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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">It works. Thank you.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Yiqi<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> jain@mcs.anl.gov [mailto:jain@mcs.anl.gov]
<br>
<b>Sent:</b> Tuesday, March 14, 2017 6:22 PM<br>
<b>To:</b> Yu, Yiqi; Shemon, Emily R.<br>
<b>Cc:</b> Vijay S. Mahadevan; MOAB Dev<br>
<b>Subject:</b> Re: Mbconvert<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14419">
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">One alternative is to save a .cub file and work with file formats other than exodus.
<br>
<br>
<o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14739">
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">What is your application, Is it Nek5000?<br>
<br>
<o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14740">
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">There are no other alternatives for reading this exodus file.
<br>
<br>
<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">This is a netCDF limitation.
<br>
<br>
<o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14609">
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><br>
<br>
<o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14799">
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">For you: Here: /homes/jain/MOAB-Jun16/tools/mbconvert
<br>
<br>
<o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14610">
<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">This one has mbconvert working on your model, it is based on a netCDF that can handle 2048 variables.<br>
<br>
<o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14413">
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<p class="MsoNormal" style="background:white"><span class="s1"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">--</span></span><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14417">
<p class="MsoNormal" style="background:white"><span class="s1"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">Rajeev Jain</span></span><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14554">
<p class="MsoNormal" style="background:white"><span class="s1"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">Mathematics and Computer Science </span></span><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span class="s1"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">Argonne National Laboratory</span></span><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span class="s1"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">1134, Bldg 240, Chicago IL USA 60439</span></span><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14503">
<p class="MsoNormal" style="background:white"><span class="s1"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black">O: 630-252-3176 </span></span><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><a href="mailto:jain@mcs.anl.gov">jain@mcs.anl.gov</a><o:p></o:p></span></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt;background:white"><span style="font-size:10.0pt;font-family:"Verdana","sans-serif";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">From:</span></b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"> "Yu, Yiqi" <<a href="mailto:yyu@anl.gov">yyu@anl.gov</a>><br>
<b>To:</b> "Shemon, Emily R." <<a href="mailto:eshemon@anl.gov">eshemon@anl.gov</a>>; "Jain, Rajeev" <<a href="mailto:jain@mcs.anl.gov">jain@mcs.anl.gov</a>>
<br>
<b>Cc:</b> Vijay S. Mahadevan <<a href="mailto:vijay.m@gmail.com">vijay.m@gmail.com</a>>; MOAB Dev <<a href="mailto:moab-dev@mcs.anl.gov">moab-dev@mcs.anl.gov</a>><br>
<b>Sent:</b> Tuesday, March 14, 2017 9:55 AM<br>
<b>Subject:</b> RE: Mbconvert</span><span style="font-family:"Helvetica","sans-serif";color:black"><o:p></o:p></span></p>
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<div id="yui_3_16_0_ym19_1_1489528362963_14829">
<p class="MsoNormal" style="margin-bottom:12.0pt;background:white"><span style="font-family:"Helvetica","sans-serif";color:black"><br>
Rajeev,<br>
Because this mesh has 540 blocks. I do not know how NC_MAX_DIMS is counted in netCDF. As long as I decrease the number of the block number, It works well. I put the mesh on MCS /nfs2/yiqi/mesh/7pins.Could you take a look? I think you can load it into cubit.
Let me know if there is other alternatives for assigning blocks regions without increasing the variable - NC_MAX_DIMS.<br>
Thank you<br>
Yiqi<br>
-----Original Message-----<br>
From: Shemon, Emily R. <br>
Sent: Tuesday, March 14, 2017 6:41 AM<br>
To: Jain, Rajeev<br>
Cc: Yu, Yiqi; Vijay S. Mahadevan; MOAB Dev<br>
Subject: Re: Mbconvert<br>
<br>
Does this have anything to do with the number of blocks in the problem? I don't think so, but want to make sure.<br>
<br>
Sent from my iPhone<br>
<br>
> On Mar 14, 2017, at 2:47 AM, "<a href="mailto:jain@mcs.anl.gov">jain@mcs.anl.gov</a>" <<a href="mailto:jain@mcs.anl.gov">jain@mcs.anl.gov</a>> wrote:<br>
> <br>
> Yiqi,<br>
> <br>
> The variable - NC_MAX_DIMS:<br>
> is the maximum number of dimensions that can be used to specify the shape of a single variable.<br>
> <br>
> Why do you have that many datasets? <br>
> Recompiling netCDF with increased NC_MAX_DIMS might solve your problem.If you point us to the file on MCS network, we can take a look.<br>
> <br>
> --<br>
> Rajeev Jain<br>
> Mathematics and Computer Science<br>
> Argonne National Laboratory<br>
> 1134, Bldg 240, Chicago IL USA 60439<br>
> O: 630-252-3176 <a href="mailto:jain@mcs.anl.gov">jain@mcs.anl.gov</a><br>
> <br>
> <br>
> <br>
> ________________________________<br>
> From: "Yu, Yiqi" <<a href="mailto:yyu@anl.gov">yyu@anl.gov</a>><br>
> To: Vijay S. Mahadevan <<a href="mailto:vijay.m@gmail.com">vijay.m@gmail.com</a>>; "Jain, Rajeev"
<br>
> <<a href="mailto:jain@mcs.anl.gov">jain@mcs.anl.gov</a>><br>
> Cc: "Shemon, Emily R." <<a href="mailto:eshemon@anl.gov">eshemon@anl.gov</a>><br>
> Sent: Friday, March 10, 2017 12:11 PM<br>
> Subject: Mbconvert<br>
> <br>
> <br>
> <br>
> <br>
> Hi Vijay and Rajeev,<br>
> I tried to convert a .exo file to h5m file with mbconvert. It give me the following error.Do you have any idea?<br>
> <br>
> [<a href="mailto:yyu@blogin1">yyu@blogin1</a> test]$ <br>
> /blues/gpfs/home/yyu/SHARP7ass/build/libraries/moab/moab-4.9.1/build/t<br>
> ools/mbconvert hex8_NBC.exo a.h5m [0]MOAB ERROR: --------------------- <br>
> Error Message ------------------------------------<br>
> [0]MOAB ERROR: ReadNCDF: File contains 1090 dims but NetCDF library supports only 1024!<br>
> [0]MOAB ERROR: read_exodus_header() line 375 in src/io/ReadNCDF.cpp <br>
> [0]MOAB ERROR: --------------------- Error Message <br>
> ------------------------------------<br>
> [0]MOAB ERROR: Failed to load file after trying all possible readers!<br>
> [0]MOAB ERROR: serial_load_file() line 635 in src/Core.cpp [0]MOAB <br>
> ERROR: load_file() line 526 in src/Core.cpp Failed to load <br>
> "hex8_NBC.exo".<br>
> Error code: MB_FAILURE (16)<br>
> Error message: Failed to load file after trying all possible readers <br>
> Best Yiqi Yu, PhD Nuclear Engineering Division Argonne National <br>
> Laboratory<br>
> 9700 S Cass Ave Bldg 208<br>
> Argonne, IL 60439-4842<br>
> <a href="http://www.anl.gov">www.anl.gov</a><br>
> Office: +1-630-252-1604<br>
> <a href="mailto:yyu@anl.gov">yyu@anl.gov</a><o:p></o:p></span></p>
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