<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi there,<div class=""><br class=""></div><div class="">Thank you for your directions! Here is the results I get after issuing make -k check at directory test/parallel, and I think they look good.</div><div class=""><br class=""></div><div class=""><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">dyn-160-39-10-173:parallel jiewu$ make -k check</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">/Applications/Xcode.app/Contents/Developer/usr/bin/make pcomm_unit scdtest pcomm_serial par_spatial_locator_test parallel_unit_tests scdpart read_nc_par ucdtrvpart mpastrvpart gcrm_par parallel_hdf5_test mhdf_parallel parallel_write_test uber_parallel_test parallel_adj parmerge_test augment_with_ghosts imeshp_test mbparallelcomm_test partcheck structured3 parmerge</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX pcomm_unit.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD pcomm_unit</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX scdtest.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD scdtest</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX pcomm_serial.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD pcomm_serial</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX par_spatial_locator_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD par_spatial_locator_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX parallel_unit_tests.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD parallel_unit_tests</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX scdpart.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD scdpart</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX ../io/read_nc.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD read_nc_par</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX ucdtrvpart.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD ucdtrvpart</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX mpastrvpart.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD mpastrvpart</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX gcrm_par.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD gcrm_par</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX parallel_hdf5_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD parallel_hdf5_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CC mhdf_parallel.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CCLD mhdf_parallel</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX parallel_write_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD parallel_write_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX uber_parallel_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD uber_parallel_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX ../adj_moab_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD parallel_adj</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX parmerge_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD parmerge_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX augment_with_ghosts.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD augment_with_ghosts</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> PPFC imeshp_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> FCLD imeshp_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX mbparallelcomm_test.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD mbparallelcomm_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX partcheck.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD partcheck</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX structured3.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD structured3</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXX parmerge.o</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> CXXLD parmerge</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">/Applications/Xcode.app/Contents/Developer/usr/bin/make check-TESTS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: pcomm_unit</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: scdtest</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: pcomm_serial</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: par_spatial_locator_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: parallel_unit_tests</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: scdpart</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: read_nc_par</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: ucdtrvpart</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: mpastrvpart</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: gcrm_par</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: parallel_hdf5_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: mhdf_parallel</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: parallel_write_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: uber_parallel_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: parallel_adj</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: parmerge_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: augment_with_ghosts</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures; color: #34bd26" class="">PASS</span><span style="font-variant-ligatures: no-common-ligatures" class="">: imeshp_test</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">============================================================================</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Testsuite summary for MOAB 4.9.2pre</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">============================================================================</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(0, 249, 0); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""># TOTAL: 18</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""># PASS: 18</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""># SKIP: 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""># XFAIL: 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""># FAIL: 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""># XPASS: 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""># ERROR: 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">============================================================================</span></div></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Following is an example I run with mpiexec, and I think it also goes well. </span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Thank you very much for your help! Any help deal with the failing tests will be much appreciated.</span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Best,</span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Jie</span></div><div class=""><br class=""></div><div class=""><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class="">dyn-160-39-10-173:mbcoupler jiewu$ mpiexec -np 2 mbcoupler_test -meshes /Users/wujie/SourceCode/moab/MeshFiles/unittest/64bricks_1khex.h5m /Users/wujie/SourceCode/moab/MeshFiles/unittest/64bricks_12ktet.h5m -itag vertex_field -outfile dum.h5m</div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">ReadHDF5: 0.0324039</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> get set meta 0.00103188</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> partial subsets 0.000803947</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> partition time 2.14577e-06</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> get set ids 0.000556946</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> set contents 0.00107098</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> polyhedra 2.5034e-05</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> elements 0.00174189</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> nodes 0.0014832</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> node adjacency 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> side elements 0.000672817</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> update connectivity 0.000102043</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> adjacency 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> delete non_adj 0.00338697</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> recursive sets 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> find contain_sets 0.000369072</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> read sets 0.00147104</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> read tags 0.01667</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> store file ids 0.00191593</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> read qa records 0.000133038</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">Parallel Read times: </span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.0473361 PARALLEL READ PART</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.0138111 PARALLEL RESOLVE_SHARED_ENTS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.0113361 PARALLEL EXCHANGE_GHOSTS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.00113177 PARALLEL RESOLVE_SHARED_SETS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.00648403 PARALLEL_AUGMENT_SETS_WITH_GHOSTS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.079994 PARALLEL TOTAL</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">ReadHDF5: 0.0714378</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> get set meta 0.000261784</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> partial subsets 0.000660181</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> partition time 9.53674e-07</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> get set ids 0.00101304</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> set contents 0.000728846</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> polyhedra 0.000128031</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> elements 0.0155201</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> nodes 0.00354886</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> node adjacency 6.19888e-06</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> side elements 0.00422001</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> update connectivity 0.00184798</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> adjacency 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> delete non_adj 0.0100739</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> recursive sets 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> find contain_sets 0.00218511</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> read sets 0.00258899</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> read tags 0.0235598</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> store file ids 0.0044961</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> read qa records 9.5129e-05</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">Parallel Read times: </span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.0779119 PARALLEL READ PART</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.0667319 PARALLEL RESOLVE_SHARED_ENTS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.0397439 PARALLEL EXCHANGE_GHOSTS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.00435901 PARALLEL RESOLVE_SHARED_SETS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.0243261 PARALLEL_AUGMENT_SETS_WITH_GHOSTS</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0.209468 PARALLEL TOTAL</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">Proc 1 iface entities: </span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 446 0d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 1080 1d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> Proc 0636 2d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0 3d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> iface entities: </span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 446 0d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 108 (446 verts adj to other iface ents)</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">0 1d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 636 2d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> 0 3d iface entities.</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> (446 verts adj to other iface ents)</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">rank 0 points of interest: 6155</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">rank 1 points of interest: 6155</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0); min-height: 16px;" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""></span><br class=""></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">Max time : 0.101124 0.0461781 0.00104499 (inst loc interp -- 2 procs)</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">WriteHDF5: 0.0779669</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> gather mesh: 0.00237203</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> create file: 0.0655501</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> create nodes: 0.00201201</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> negotiate types: 2.19345e-05</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> create elem: 0.000785828</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> file id exch: 0.0234561</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> create adj: 0.000414848</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> create set: 0.019654</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> shared ids: 6.19888e-05</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> shared data: 0.014715</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> set offsets: 0.00447798</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> create tags: 0.0160849</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> coordinates: 0.00199103</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> connectivity: 0.00162005</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> sets: 0.0010829</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> set descrip: 0.00019598</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> set content: 0.000527859</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> set parent: 0.000226021</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> set child: 0.000128984</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> adjacencies: 5.96046e-06</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> tags: 0.00700402</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> dense data: 0.00127792</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> sparse data: 0.00569224</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""> var-len data: 0</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">Wrote dum.h5m</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(254, 253, 201); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">mbcoupler_test complete.</span></div></div><div class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""><br class=""></span></div><div class=""><br class="">
<br class=""><div><blockquote type="cite" class=""><div class="">On May 13, 2016, at 2:58 PM, Grindeanu, Iulian R. <<a href="mailto:iulian@mcs.anl.gov" class="">iulian@mcs.anl.gov</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">yes, can you try make -k check ?<br class="">It will not stop at the first failed test, it will try to test everything<br class="">________________________________________<br class="">From: Vijay S. Mahadevan [<a href="mailto:vijay.m@gmail.com" class="">vijay.m@gmail.com</a>]<br class="">Sent: Friday, May 13, 2016 1:53 PM<br class="">To: Jie Wu<br class="">Cc: Grindeanu, Iulian R.; <a href="mailto:moab-dev@mcs.anl.gov" class="">moab-dev@mcs.anl.gov</a><br class="">Subject: Re: [MOAB-dev] Error message when compiling the mbcoupler_test.cpp<br class=""><br class="">Jie,<br class=""><br class="">We are looking into the failing tests and will update in case there is<br class="">a bug in the code. Our nightly tests are running cleanly and so I'm<br class="">curious to see if other tests are failing. Can you go to test/parallel<br class="">and run "make check" there to verify if the parallel job launch is<br class="">working correctly ? Also, can you verify if you can run MPI programs<br class="">with mpiexec ?<br class=""><br class="">Vijay<br class=""><br class=""><br class=""><br class="">Vijay<br class=""><br class="">On Fri, May 13, 2016 at 1:31 PM, Jie Wu <<a href="mailto:jie.voo@gmail.com" class="">jie.voo@gmail.com</a>> wrote:<br class=""><blockquote type="cite" class="">Hi Vijay,<br class=""><br class="">Deleting the auto-installed packages under sandbox before issue new<br class="">configurations works good! No error message emerged until I input the<br class="">command make check, which is as following.<br class=""><br class="">Do you have any idea for this problem?<br class=""><br class="">Best,<br class="">Jie<br class=""><br class="">PASS: reorder_test<br class="">FAIL: test_prog_opt<br class="">PASS: coords_connect_iterate<br class="">PASS: elem_eval_test<br class="">PASS: spatial_locator_test<br class="">PASS: test_boundbox<br class="">PASS: adj_moab_test<br class="">PASS: uref_mesh_test<br class="">PASS: verdict_test<br class="">PASS: test_Matrix3<br class="">PASS: mbfacet_test<br class="">PASS: gttool_test<br class="">PASS: cropvol_test<br class="">FAIL: mergemesh_test<br class="">PASS: mbground_test<br class="">PASS: lloyd_smoother_test<br class="">============================================================================<br class="">Testsuite summary for MOAB 4.9.2pre<br class="">============================================================================<br class=""># TOTAL: 36<br class=""># PASS: 34<br class=""># SKIP: 0<br class=""># XFAIL: 0<br class=""># FAIL: 2<br class=""># XPASS: 0<br class=""># ERROR: 0<br class="">============================================================================<br class="">See test/test-suite.log<br class="">Please report to <a href="mailto:moab-dev@mcs.anl.gov" class="">moab-dev@mcs.anl.gov</a><br class="">============================================================================<br class="">make[4]: *** [test-suite.log] Error 1<br class="">make[3]: *** [check-TESTS] Error 2<br class="">make[2]: *** [check-am] Error 2<br class="">make[1]: *** [check-recursive] Error 1<br class="">make: *** [check-recursive] Error 1<br class=""><br class=""><br class=""><br class=""><br class="">On May 13, 2016, at 1:08 PM, Vijay S. Mahadevan <<a href="mailto:vijay.m@gmail.com" class="">vijay.m@gmail.com</a>> wrote:<br class=""><br class="">Jie, since you now changed the compilers used to configure the stack,<br class="">I would advise deleting the auto-installed packages under sandbox<br class="">directory and then re-configuring. This will force the rebuild of<br class="">HDF5/NetCDF packages with the parallel MPI compilers and you should<br class="">get the HDF5-parallel support enabled after that. Makes sense ?<br class=""><br class="">Vijay<br class=""><br class="">On Fri, May 13, 2016 at 11:27 AM, Jie Wu <<a href="mailto:jie.voo@gmail.com" class="">jie.voo@gmail.com</a>> wrote:<br class=""><br class="">Hi Vijay,<br class=""><br class="">Thank you for your reply. The new configuration do works. Here shows the<br class="">command I inputed and the message while I input: make check.<br class=""><br class="">dyn-160-39-10-173:moab jiewu$ ./configure --with-mpi=/usr/local<br class="">CC=/usr/local/bin/mpicc CXX=/usr/local/bin/mpic++ FC=/usr/local/bin/mpif90<br class="">F77=/usr/local/bin/mpif77 --download-metis --download-hdf5 --download-netcdf<br class="">--enable-docs --with-doxygen=/Applications/Doxygen.app/Contents/Resources/<br class=""><br class="">The results are<br class=""><br class="">configure: WARNING:<br class="">*************************************************************************<br class="">* MOAB has been configured with parallel and HDF5 support<br class="">* but the configured HDF5 library does not support parallel IO.<br class="">* Some parallel IO capabilities will be disabled.<br class="">*************************************************************************<br class=""><br class="">After that, I inputted the command, make -j4, and then command make check.<br class="">Here are the results it shows<br class=""><br class="">/Applications/Xcode.app/Contents/Developer/usr/bin/make check-TESTS<br class="">PASS: elem_util_test<br class="">PASS: element_test<br class="">FAIL: datacoupler_test<br class="">FAIL: mbcoupler_test<br class="">FAIL: parcoupler_test<br class="">============================================================================<br class="">Testsuite summary for MOAB 4.9.2pre<br class="">============================================================================<br class=""># TOTAL: 5<br class=""># PASS: 2<br class=""># SKIP: 0<br class=""># XFAIL: 0<br class=""># FAIL: 3<br class=""># XPASS: 0<br class=""># ERROR: 0<br class="">============================================================================<br class="">See tools/mbcoupler/test-suite.log<br class="">Please report to <a href="mailto:moab-dev@mcs.anl.gov" class="">moab-dev@mcs.anl.gov</a><br class="">============================================================================<br class="">make[4]: *** [test-suite.log] Error 1<br class="">make[3]: *** [check-TESTS] Error 2<br class="">make[2]: *** [check-am] Error 2<br class="">make[1]: *** [check-recursive] Error 1<br class="">make: *** [check-recursive] Error 1<br class=""><br class="">Then I was trying to run the mbcouple_test with command<br class="">dyn-160-39-10-173:mbcoupler jiewu$ mpiexec -np 2 mbcoupler_test -meshes<br class="">/Users/wujie/SourceCode/moab/MeshFiles/unittest/64bricks_1khex.h5m<br class="">/Users/wujie/SourceCode/moab/MeshFiles/unittest/64bricks_12ktet.h5m -itag<br class="">vertex_field -outfile dum.h5m<br class="">Now the results look like,<br class=""><br class="">[0]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[0]MOAB ERROR: MOAB not configured with parallel HDF5 support!<br class="">[0]MOAB ERROR: set_up_read() line 355 in src/io/ReadHDF5.cpp<br class="">[0]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[0]MOAB ERROR: NULL file handle.!<br class="">[0]MOAB ERROR: is_error() line 133 in src/io/ReadHDF5.hpp<br class="">[1]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[1]MOAB ERROR: MOAB not configured with parallel HDF5 support!<br class="">[1]MOAB ERROR: set_up_read() line 355 in src/io/ReadHDF5.cpp<br class="">[1]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[1]MOAB ERROR: NULL file handle.!<br class="">[1]MOAB ERROR: is_error() line 133 in src/io/ReadHDF5.hpp<br class="">[0]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[0]MOAB ERROR: Failed to load file after trying all possible readers!<br class="">[0]MOAB ERROR: serial_load_file() line 635 in src/Core.cpp<br class="">[0]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[0]MOAB ERROR: Failed in step PARALLEL READ PART!<br class="">[0]MOAB ERROR: load_file() line 553 in src/parallel/ReadParallel.cpp<br class="">[0]MOAB ERROR: load_file() line 252 in src/parallel/ReadParallel.cpp<br class="">[0]MOAB ERROR: load_file() line 515 in src/Core.cpp<br class="">[1]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[1]MOAB ERROR: Failed to load file after trying all possible readers!<br class="">[1]MOAB ERROR: serial_load_file() line 635 in src/Core.cpp<br class="">[1]MOAB ERROR: --------------------- Error Message<br class="">------------------------------------<br class="">[1]MOAB ERROR: Failed in step PARALLEL READ PART!<br class="">[1]MOAB ERROR: load_file() line 553 in src/parallel/ReadParallel.cpp<br class="">[0]MOAB ERROR: main() line 172 in mbcoupler_test.cpp<br class="">[1]MOAB ERROR: load_file() line 252 in src/parallel/ReadParallel.cpp<br class="">[1]MOAB ERROR: load_file() line 515 in src/Core.cpp<br class="">[1]MOAB ERROR: main() line 172 in mbcoupler_test.cpp<br class="">--------------------------------------------------------------------------<br class="">MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD<br class="">with errorcode 16.<br class=""><br class="">NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.<br class="">You may or may not see output from other processes, depending on<br class="">exactly when Open MPI kills them.<br class="">--------------------------------------------------------------------------<br class="">[<a href="http://dyn-160-39-11-172.dyn.columbia.edu" class="">dyn-160-39-11-172.dyn.columbia.edu</a>:26361] 1 more process has sent help<br class="">message help-mpi-api.txt / mpi-abort<br class="">[<a href="http://dyn-160-39-11-172.dyn.columbia.edu" class="">dyn-160-39-11-172.dyn.columbia.edu</a>:26361] Set MCA parameter<br class="">"orte_base_help_aggregate" to 0 to see all help / error messages<br class="">The other excitable file in mbcoupler folder, like ./element_test now can<br class="">run successfully.<br class=""><br class="">Any direction for this was deeply appreciated!<br class=""><br class="">Best,<br class="">Jie<br class=""><br class=""><br class="">On May 13, 2016, at 11:54 AM, Vijay S. Mahadevan <<a href="mailto:vijay.m@gmail.com" class="">vijay.m@gmail.com</a>> wrote:<br class=""><br class="">I also forgot to mention that you can be more explicit in the<br class="">specification of compilers during configuration, if you really want.<br class="">This would avoid headaches since the user specified wrappers will<br class="">directly be used. For example:<br class=""><br class="">./configure --with-mpi=/usr/local CC=/usr/local/bin/mpicc<br class="">CXX=/usr/local/bin/mpic++ FC=/usr/local/bin/mpif90<br class="">F77=/usr/local/bin/mpif77 <OTHER_CONFIGURE_OPTIONS><br class=""><br class="">Vijay<br class=""><br class="">On Fri, May 13, 2016 at 10:52 AM, Vijay S. Mahadevan <<a href="mailto:vijay.m@gmail.com" class="">vijay.m@gmail.com</a>><br class="">wrote:<br class=""><br class="">Please use --with-mpi=/usr/local as the configure option. If you have<br class="">MPI pre-installed, either through PETSc or natively in your system,<br class="">always try to re-use that to maintain consistency. This will help<br class="">avoid mix-up of MPI implementations when you try to launch a parallel<br class="">job later.<br class=""><br class="">Let us know if the new configuration works.<br class=""><br class="">Vijay<br class=""><br class="">On Thu, May 12, 2016 at 6:32 PM, Jie Wu <<a href="mailto:jie.voo@gmail.com" class="">jie.voo@gmail.com</a>> wrote:<br class=""><br class="">Thank you very much for your reply. I search in my src/moab/MOABConfig.h<br class="">file, and I did not find the MOAB_HAVE_MPI. So I think the MOAB on my laptop<br class="">cannot run in parallel yet.<br class=""><br class="">I have this from my terminal.<br class=""><br class="">dyn-160-39-10-173:moab jiewu$ which mpic++<br class="">/usr/local/bin/mpic++<br class=""><br class="">But I cannot get anything by inputing which mpi. So I don’t know where the<br class="">mpi is in my laptop.<br class=""><br class="">dyn-160-39-10-173:moab jiewu$ which mpi<br class=""><br class="">I have petsc installed which has mpich, and linking that directory to the<br class="">MOAB configure option also did not work.<br class=""><br class="">Should I install mpi solely? I am afraid it might conflict with the one<br class="">installed in petsc.<br class=""><br class="">Is there any method that the mpi could be installed with MOAB automatically,<br class="">or maybe other proper manner? Thanks a lot!<br class=""><br class="">Best,<br class="">Jie<br class=""><br class=""><br class="">On May 12, 2016, at 6:11 PM, Vijay S. Mahadevan <<a href="mailto:vijay.m@gmail.com" class="">vijay.m@gmail.com</a>> wrote:<br class=""><br class="">Can you send the config.log. Looks like MPI is not getting enabled<br class="">(possibly), even with --dowload-mpich. Or you can check<br class="">src/moab/MOABConfig.h in your build directory and grep for<br class="">MOAB_HAVE_MPI.<br class=""><br class="">Vijay<br class=""><br class="">On Thu, May 12, 2016 at 4:46 PM, Jie Wu <<a href="mailto:jie.voo@gmail.com" class="">jie.voo@gmail.com</a>> wrote:<br class=""><br class="">Hi Iulian,<br class=""><br class="">Thanks for your reply. I think my configure is with mpi. Here is my<br class="">configure command<br class=""><br class="">dyn-160-39-10-173:moab jiewu$ ./configure --download-metis<br class="">--download-hdf5 --download-netcdf --download-mpich --enable-docs<br class="">--with-doxygen=/Applications/Doxygen.app/Contents/Resources/<br class=""><br class="">Best,<br class="">Jie<br class=""><br class="">On May 12, 2016, at 5:43 PM, Grindeanu, Iulian R. <<a href="mailto:iulian@mcs.anl.gov" class="">iulian@mcs.anl.gov</a>><br class="">wrote:<br class=""><br class="">Hi Jie,<br class="">Did you configure with mpi? What is your configure command?<br class=""><br class="">Iulian<br class="">________________________________<br class="">From: <a href="mailto:moab-dev-bounces@mcs.anl.gov" class="">moab-dev-bounces@mcs.anl.gov</a> [<a href="mailto:moab-dev-bounces@mcs.anl.gov" class="">moab-dev-bounces@mcs.anl.gov</a>] on behalf<br class="">of Jie Wu [<a href="mailto:jie.voo@gmail.com" class="">jie.voo@gmail.com</a>]<br class="">Sent: Thursday, May 12, 2016 4:23 PM<br class="">To: <a href="mailto:moab-dev@mcs.anl.gov" class="">moab-dev@mcs.anl.gov</a><br class="">Subject: [MOAB-dev] Error message when compiling the mbcoupler_test.cpp<br class=""><br class="">Hi all,<br class=""><br class="">My name is Jie and I am part of computational mechanics group at civil<br class="">engineering dept. of Columbia university.<br class=""><br class="">I am working on large deformation problems which may lead mesh distortions<br class="">and a re-meshing become necessary.<br class=""><br class="">I would like to compile mbcoupler_test.cpp to learn how it transfer the<br class="">variables from old to the new mesh.<br class=""><br class="">Now I can successfully compile the codes in build/examples and they works<br class="">good! But I cannot compile the codes in folder build/tools/mbcoupler by<br class="">following the instructions in build/tools/readme.tools, which shows error<br class="">message like following.<br class=""><br class="">Do you have any idea for this problem? Thanks a lot!<br class=""><br class="">Best,<br class="">Jie<br class=""><br class="">DataCoupler.cpp:136:25: error: member access into incomplete<br class=""> type 'moab::ParallelComm'<br class="">if (myPcomm && myPcomm->size() > 1) {<br class=""> ^<br class="">./DataCoupler.hpp:34:7: note: forward declaration of<br class=""> 'moab::ParallelComm'<br class="">class ParallelComm;<br class=""> ^<br class="">DataCoupler.cpp:161:12: error: member access into incomplete<br class=""> type 'moab::ParallelComm'<br class=""> myPcomm->proc_config().crystal_router()->gs_tran...<br class=""> ^<br class="">./DataCoupler.hpp:34:7: note: forward declaration of<br class=""> 'moab::ParallelComm'<br class="">class ParallelComm;<br class=""> ^<br class="">DataCoupler.cpp:187:12: error: member access into incomplete<br class=""> type 'moab::ParallelComm'<br class=""> myPcomm->proc_config().crystal_router()->gs_tran...<br class=""> ^<br class="">./DataCoupler.hpp:34:7: note: forward declaration of<br class=""> 'moab::ParallelComm'<br class="">class ParallelComm;<br class=""> ^<br class="">3 errors generated.<br class="">make[2]: *** [DataCoupler.lo] Error 1<br class="">make[2]: *** Waiting for unfinished jobs....<br class="">Coupler.cpp:344:45: error: no member named 'gs_transfer' in<br class=""> 'moab::gs_data::crystal_data'<br class=""> (myPc->proc_config().crystal_router())->gs_trans...<br class=""> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^<br class="">Coupler.cpp:388:45: error: no member named 'gs_transfer' in<br class=""> 'moab::gs_data::crystal_data'<br class=""> (myPc->proc_config().crystal_router())->gs_trans...<br class=""> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^<br class="">Coupler.cpp:611:45: error: no member named 'gs_transfer' in<br class=""> 'moab::gs_data::crystal_data'<br class=""> (myPc->proc_config().crystal_router())->gs_trans...<br class=""> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^<br class="">Coupler.cpp:638:43: error: no member named 'gs_transfer' in<br class=""> 'moab::gs_data::crystal_data'<br class=""> myPc->proc_config().crystal_router()->gs_transfe...<br class=""> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^<br class="">4 errors generated.<br class="">make[2]: *** [Coupler.lo] Error 1<br class="">make[1]: *** [all-recursive] Error 1<br class="">make: *** [all-recursive] Error 1<br class=""><br class=""><br class=""><br class=""><br class=""><br class=""><br class=""><br class=""><br class=""></blockquote></div></div></blockquote></div><br class=""></div></body></html>