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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Friedrich,<br>
<br>
What are you trying to do? <br>
Rajeev and Vijay have experience running / building nek5000 with moab.<br>
<br>
Iulian<br>
<div style="font-family: Times New Roman; color: #000000; font-size: 16px">
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<div style="direction: ltr;" id="divRpF943484"><font size="2" color="#000000" face="Tahoma"><b>From:</b> Grabner, Friedrich [F.M.Grabner@warwick.ac.uk]<br>
<b>Sent:</b> Monday, October 27, 2014 12:17 PM<br>
<b>To:</b> Grindeanu, Iulian R.<br>
<b>Subject:</b> Re: Parallel Test Failure<br>
</font><br>
</div>
<div></div>
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<p>Hi Iulian,</p>
<p><br>
</p>
<p>I have managed to install it although I believe there is some issue when installing on hpc.</p>
<p><br>
</p>
<p>However now when I try to run my moab enabled nek5000 I can only do so if I secure my resources on the system and then manually start my job.
</p>
<p><br>
</p>
<p><em>nekmpi [casename] [np]</em><br>
</p>
<p><br>
</p>
<p>When I submit a job to the queue I receive the following error:</p>
<p><em></em><br>
<em>-bash: BASH_FUNC_module(): line 0: syntax error near unexpected token `)'</em><br>
<em>-bash: BASH_FUNC_module(): line 0: `BASH_FUNC_module() () { eval $($LMOD_CMD bash "$@");'</em><br>
<em>-bash: error importing function definition for `BASH_FUNC_module'</em><br>
<em>/home/eng/esumgy/.bashrc: line 29: module: command not found</em><br>
<em>mv: cannot stat `pipe.log.8': No such file or directory</em><br>
<em>mv: cannot stat `pipe.sch': No such file or directory</em><br>
<em>node6.1259Error re-mmapping shared memory: Cannot allocate memory (err=9)</em><br>
<em>node6.1259Error re-mmapping shared memory: Cannot allocate memory</em><br>
<em>[node6:01259] Open MPI detected an unexpected PSM error in opening an endpoint: Error re-mmapping shared memory: Cannot allocate memory</em><br>
<em>--------------------------------------------------------------------------</em><br>
<em>mpiexec has exited due to process rank 5 with PID 1259 on</em><br>
<em>node node6 exiting without calling "finalize". This may</em><br>
<em>have caused other processes in the application to be</em><br>
<em>terminated by signals sent by mpiexec (as reported here).</em><br>
<em>--------------------------------------------------------------------------</em></p>
<p><br>
</p>
<p>Could this be as I haven't correctly installed moab or any of it's prerequisites?</p>
<p><br>
</p>
<p>Regards Friedrich<br>
</p>
<p><br>
</p>
<p><br>
</p>
<p><br>
</p>
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<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b> Grindeanu, Iulian R. <iulian@mcs.anl.gov><br>
<b>Sent:</b> 27 October 2014 16:54<br>
<b>To:</b> Grabner, Friedrich<br>
<b>Cc:</b> MOAB dev<br>
<b>Subject:</b> RE: Parallel Test Failure</font>
<div> </div>
</div>
<div>
<div style="direction:ltr; font-family:Tahoma; color:#000000; font-size:10pt">Hi Friedrich,<br>
Thanks for your report.<br>
I could not reproduce your error, so I don't know what is going on.<br>
Are these the only errors you see in your make check? <br>
Can you try a newer version of moab, or hdf5?<br>
<br>
We have several nightly builds on our systems that resemble you configuration, for example this one:<br>
<a href="http://gnep.mcs.anl.gov:8010/builders/moab-par" target="_blank">http://gnep.mcs.anl.gov:8010/builders/moab-par</a><br>
<br>
more configurations are here:<br>
<br>
http://gnep.mcs.anl.gov:8010/waterfall?category=moab<br>
<br>
thanks,<br>
Iulian<br>
<br>
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<div id="divRpF805639" style="direction:ltr"><font size="2" color="#000000" face="Tahoma"><b>From:</b> Grabner, Friedrich [F.M.Grabner@warwick.ac.uk]<br>
<b>Sent:</b> Friday, October 24, 2014 8:03 AM<br>
<b>To:</b> Grindeanu, Iulian R.<br>
<b>Subject:</b> Re: Parallel Test Failure<br>
</font><br>
</div>
<div></div>
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<p>Hi Iulian,</p>
<p><br>
</p>
<p>See attached!</p>
<p><br>
</p>
<p>Friedrich<br>
</p>
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<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b> Grindeanu, Iulian R. <iulian@mcs.anl.gov><br>
<b>Sent:</b> 24 October 2014 13:14<br>
<b>To:</b> Grabner, Friedrich; moab-announce@mcs.anl.gov<br>
<b>Subject:</b> RE: Parallel Test Failure</font>
<div> </div>
</div>
<div>
<div style="direction:ltr; font-family:Tahoma; color:#000000; font-size:10pt">can you send your config.log file?<br>
Thanks,<br>
Iulian<br>
<br>
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<div id="divRpF384362" style="direction:ltr"><font size="2" color="#000000" face="Tahoma"><b>From:</b> moab-announce-bounces@mcs.anl.gov [moab-announce-bounces@mcs.anl.gov] on behalf of Grabner, Friedrich [F.M.Grabner@warwick.ac.uk]<br>
<b>Sent:</b> Friday, October 24, 2014 4:22 AM<br>
<b>To:</b> moab-announce@mcs.anl.gov<br>
<b>Subject:</b> [MOAB-announce] Parallel Test Failure<br>
</font><br>
</div>
<div></div>
<div>
<p>Hi All,</p>
<p><br>
</p>
<p>I am trying to install moab-4.6.3 on my HPC system following the instructions on following webpage:</p>
<p><br>
</p>
<p><a id="lnk948719" href="http://trac.mcs.anl.gov/projects/ITAPS/wiki/BuildingAndUsingMOAB" target="_blank">http://trac.mcs.anl.gov/projects/ITAPS/wiki/BuildingAndUsingMOAB</a></p>
<p><br>
</p>
<p>I have run everything exactly as specified on my desktop and successfully installed it however on hpc I receive error:</p>
<p><br>
</p>
<p><em>PASS: pcomm_unit </em><br>
<em>FAIL: parallel_unit_tests </em><br>
<em>PASS: uber_parallel_test </em><br>
<em>FAIL: scdtest </em><br>
<em>PASS: pcomm_serial </em><br>
<em>PASS: par_spatial_locator_test </em><br>
<em>FAIL: parallel_hdf5_test </em><br>
<em>PASS: mhdf_parallel </em><br>
<em>PASS: parallel_write_test </em><br>
<em>================================ </em><br>
<em>3 of 9 tests failed </em><br>
<em>See test/parallel/test-suite.log </em><br>
<em>================================ </em><br>
<em>make[4]: *** [test-suite.log] Error 1 </em><br>
<em>make[4]: Leaving directory `/gpfs/home/eng/esumgy/moab-4.6.3/test/parallel' </em><br>
<em>make[3]: *** [check-TESTS] Error 2 </em><br>
<em>make[3]: Leaving directory `/gpfs/home/eng/esumgy/moab-4.6.3/test/parallel' </em><br>
<em>make[2]: *** [check-am] Error 2 </em><br>
<em>make[2]: Leaving directory `/gpfs/home/eng/esumgy/moab-4.6.3/test/parallel' </em><br>
<em>make[1]: *** [check-recursive] Error 1 </em><br>
<em>make[1]: Leaving directory `/gpfs/home/eng/esumgy/moab-4.6.3/test</em></p>
<p><br>
</p>
<p>I have attached my <em>test-suite.log </em>file.</p>
<p><br>
</p>
<p>Thanks in advance, Friedrich<br>
</p>
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