This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MOAB configure 4.6.3, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3 --disable-fortran ## --------- ## ## Platform. ## ## --------- ## hostname = dyna6-93.cs.uoregon.edu uname -m = x86_64 uname -r = 13.2.0 uname -s = Darwin uname -v = Darwin Kernel Version 13.2.0: Thu Apr 17 23:03:13 PDT 2014; root:xnu-2422.100.13~1/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 13.2.0: Thu Apr 17 23:03:13 PDT 2014; root:xnu-2422.100.13~1/RELEASE_X86_64 Kernel configured for up to 8 processors. 4 processors are physically available. 8 processors are logically available. Processor type: i486 (Intel 80486) Processors active: 0 1 2 3 4 5 6 7 Primary memory available: 16.00 gigabytes Default processor set: 201 tasks, 925 threads, 8 processors Load average: 1.45, Mach factor: 6.54 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/local/bin PATH: /opt/local/sbin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /usr/local/bin PATH: /usr/texbin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3237: checking build system type configure:3251: result: x86_64-apple-darwin13.2.0 configure:3271: checking host system type configure:3284: result: x86_64-apple-darwin13.2.0 configure:3304: checking target system type configure:3317: result: x86_64-apple-darwin13.2.0 configure:3360: checking for a BSD-compatible install configure:3428: result: /usr/bin/install -c configure:3439: checking whether build environment is sane configure:3489: result: yes configure:3630: checking for a thread-safe mkdir -p configure:3669: result: config/install-sh -c -d configure:3682: checking for gawk configure:3712: result: no configure:3682: checking for mawk configure:3712: result: no configure:3682: checking for nawk configure:3712: result: no configure:3682: checking for awk configure:3698: found /usr/bin/awk configure:3709: result: awk configure:3720: checking whether make sets $(MAKE) configure:3742: result: yes configure:3825: checking for sed configure:3841: found /usr/bin/sed configure:3853: result: sed configure:3889: checking for style of include used by make configure:3917: result: GNU configure:3984: checking for mpixlc configure:4014: result: no configure:3984: checking for mpicc configure:4000: found /usr/local/bin/mpicc configure:4011: result: mpicc configure:4049: checking for mpixlcxx configure:4079: result: no configure:4049: checking for mpiCC configure:4065: found /usr/local/bin/mpiCC configure:4076: result: mpiCC configure:4802: checking for C compiler version configure:4811: mpicc --version >&5 Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.2.0 Thread model: posix Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 configure:4822: $? = 0 configure:4811: mpicc -v >&5 Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.2.0 Thread model: posix configure:4822: $? = 0 configure:4811: mpicc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:4822: $? = 1 configure:4811: mpicc -qversion >&5 clang: error: no input files configure:4822: $? = 1 configure:4842: checking whether the C compiler works configure:4864: mpicc conftest.c >&5 configure:4868: $? = 0 configure:4916: result: yes configure:4919: checking for C compiler default output file name configure:4921: result: a.out configure:4927: checking for suffix of executables configure:4934: mpicc -o conftest conftest.c >&5 configure:4938: $? = 0 configure:4960: result: configure:4982: checking whether we are cross compiling configure:4990: mpicc -o conftest conftest.c >&5 configure:4994: $? = 0 configure:5001: ./conftest configure:5005: $? = 0 configure:5020: result: no configure:5025: checking for suffix of object files configure:5047: mpicc -c conftest.c >&5 configure:5051: $? = 0 configure:5072: result: o configure:5076: checking whether we are using the GNU C compiler configure:5095: mpicc -c conftest.c >&5 configure:5095: $? = 0 configure:5104: result: yes configure:5113: checking whether mpicc accepts -g configure:5133: mpicc -c -g conftest.c >&5 configure:5133: $? = 0 configure:5174: result: yes configure:5191: checking for mpicc option to accept ISO C89 configure:5255: mpicc -c -g -O2 conftest.c >&5 configure:5255: $? = 0 configure:5268: result: none needed configure:5290: checking dependency style of mpicc configure:5401: result: gcc3 configure:5422: checking how to run the C preprocessor configure:5453: mpicc -E conftest.c configure:5453: $? = 0 configure:5467: mpicc -E conftest.c conftest.c:11:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:5467: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | /* end confdefs.h. */ | #include configure:5492: result: mpicc -E configure:5512: mpicc -E conftest.c configure:5512: $? = 0 configure:5526: mpicc -E conftest.c conftest.c:11:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:5526: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | /* end confdefs.h. */ | #include configure:5667: checking for C++ compiler version configure:5676: mpiCC --version >&5 Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.2.0 Thread model: posix Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 configure:5687: $? = 0 configure:5676: mpiCC -v >&5 Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.2.0 Thread model: posix configure:5687: $? = 0 configure:5676: mpiCC -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:5687: $? = 1 configure:5676: mpiCC -qversion >&5 clang: error: no input files configure:5687: $? = 1 configure:5691: checking whether we are using the GNU C++ compiler configure:5710: mpiCC -c conftest.cpp >&5 configure:5710: $? = 0 configure:5719: result: yes configure:5728: checking whether mpiCC accepts -g configure:5748: mpiCC -c -g conftest.cpp >&5 configure:5748: $? = 0 configure:5789: result: yes configure:5814: checking dependency style of mpiCC configure:5925: result: gcc3 configure:5945: checking how to run the C++ preprocessor configure:5972: mpiCC -E conftest.cpp configure:5972: $? = 0 configure:5986: mpiCC -E conftest.cpp conftest.cpp:11:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:5986: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | /* end confdefs.h. */ | #include configure:6011: result: mpiCC -E configure:6031: mpiCC -E conftest.cpp configure:6031: $? = 0 configure:6045: mpiCC -E conftest.cpp conftest.cpp:11:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:6045: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | /* end confdefs.h. */ | #include configure:6513: checking whether ln -s works configure:6517: result: yes configure:6524: checking whether make sets $(MAKE) configure:6546: result: yes configure:6632: checking how to print strings configure:6659: result: printf configure:6680: checking for a sed that does not truncate output configure:6744: result: sed configure:6762: checking for grep that handles long lines and -e configure:6820: result: /usr/bin/grep configure:6825: checking for egrep configure:6887: result: /usr/bin/grep -E configure:6892: checking for fgrep configure:6954: result: /usr/bin/grep -F configure:6989: checking for ld used by mpicc configure:7056: result: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld configure:7063: checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld configure:7078: result: no configure:7090: checking for BSD- or MS-compatible name lister (nm) configure:7139: result: /opt/local/bin/nm configure:7269: checking the name lister (/opt/local/bin/nm) interface configure:7276: mpicc -c -g -O2 conftest.c >&5 configure:7279: /opt/local/bin/nm "conftest.o" configure:7282: output 0000000000000214 S _some_variable configure:7289: result: BSD nm configure:7293: checking the maximum length of command line arguments configure:7423: result: 196608 configure:7440: checking whether the shell understands some XSI constructs configure:7450: result: yes configure:7454: checking whether the shell understands "+=" configure:7460: result: yes configure:7495: checking how to convert x86_64-apple-darwin13.2.0 file names to x86_64-apple-darwin13.2.0 format configure:7535: result: func_convert_file_noop configure:7542: checking how to convert x86_64-apple-darwin13.2.0 file names to toolchain format configure:7562: result: func_convert_file_noop configure:7569: checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files configure:7576: result: -r configure:7650: checking for objdump configure:7680: result: no configure:7709: checking how to recognize dependent libraries configure:7911: result: pass_all configure:7996: checking for dlltool configure:8026: result: no configure:8056: checking how to associate runtime and link libraries configure:8083: result: printf %s\n configure:8144: checking for ar configure:8160: found /opt/local/bin/ar configure:8171: result: ar configure:8208: checking for archiver @FILE support configure:8225: mpicc -c -g -O2 conftest.c >&5 configure:8225: $? = 0 configure:8228: ar cru libconftest.a @conftest.lst >&5 ar: @conftest.lst: No such file or directory configure:8231: $? = 1 configure:8251: result: no configure:8309: checking for strip configure:8325: found /opt/local/bin/strip configure:8336: result: strip configure:8408: checking for ranlib configure:8424: found /opt/local/bin/ranlib configure:8435: result: ranlib configure:8537: checking command to parse /opt/local/bin/nm output from mpicc object configure:8657: mpicc -c -g -O2 conftest.c >&5 configure:8660: $? = 0 configure:8664: /opt/local/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:8667: $? = 0 cannot find nm_test_var in conftest.nm configure:8657: mpicc -c -g -O2 conftest.c >&5 configure:8660: $? = 0 configure:8664: /opt/local/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:8667: $? = 0 configure:8733: mpicc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:8736: $? = 0 configure:8774: result: ok configure:8811: checking for sysroot configure:8841: result: no configure:9097: checking for mt configure:9127: result: no configure:9147: checking if : is a manifest tool configure:9153: : '-?' configure:9161: result: no configure:9217: checking for dsymutil configure:9233: found /usr/bin/dsymutil configure:9244: result: dsymutil configure:9309: checking for nmedit configure:9325: found /opt/local/bin/nmedit configure:9336: result: nmedit configure:9401: checking for lipo configure:9417: found /opt/local/bin/lipo configure:9428: result: lipo configure:9493: checking for otool configure:9509: found /opt/local/bin/otool configure:9520: result: otool configure:9585: checking for otool64 configure:9615: result: no configure:9660: checking for -single_module linker flag mpicc -g -O2 -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c configure:9693: result: yes configure:9696: checking for -exported_symbols_list linker flag configure:9716: mpicc -o conftest -g -O2 -Wl,-exported_symbols_list,conftest.sym conftest.c -lm >&5 configure:9716: $? = 0 configure:9726: result: yes configure:9729: checking for -force_load linker flag mpicc -g -O2 -c -o conftest.o conftest.c ar cru libconftest.a conftest.o ranlib libconftest.a mpicc -g -O2 -o conftest conftest.c -Wl,-force_load,./libconftest.a configure:9761: result: yes configure:9799: checking for ANSI C header files configure:9819: mpicc -c -g -O2 conftest.c >&5 configure:9819: $? = 0 configure:9892: mpicc -o conftest -g -O2 conftest.c -lm >&5 configure:9892: $? = 0 configure:9892: ./conftest configure:9892: $? = 0 configure:9903: result: yes configure:9916: checking for sys/types.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for sys/stat.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for stdlib.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for string.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for memory.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for strings.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for inttypes.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for stdint.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9916: checking for unistd.h configure:9916: mpicc -c -g -O2 conftest.c >&5 configure:9916: $? = 0 configure:9916: result: yes configure:9930: checking for dlfcn.h configure:9930: mpicc -c -g -O2 conftest.c >&5 configure:9930: $? = 0 configure:9930: result: yes configure:10119: checking for objdir configure:10134: result: .libs configure:10405: checking if mpicc supports -fno-rtti -fno-exceptions configure:10423: mpicc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 configure:10427: $? = 0 configure:10440: result: yes configure:10767: checking for mpicc option to produce PIC configure:10774: result: -fno-common -DPIC configure:10782: checking if mpicc PIC flag -fno-common -DPIC works configure:10800: mpicc -c -g -O2 -fno-common -DPIC -DPIC conftest.c >&5 configure:10804: $? = 0 configure:10817: result: yes configure:10846: checking if mpicc static flag -static works configure:10874: result: no configure:10889: checking if mpicc supports -c -o file.o configure:10910: mpicc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:10914: $? = 0 configure:10936: result: yes configure:10944: checking if mpicc supports -c -o file.o configure:10991: result: yes configure:11024: checking whether the mpicc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries configure:12181: result: yes configure:12421: checking dynamic linker characteristics configure:13166: result: darwin13.2.0 dyld configure:13273: checking how to hardcode library paths into programs configure:13298: result: immediate configure:13838: checking whether stripping libraries is possible configure:13852: result: yes configure:13878: checking if libtool supports shared libraries configure:13880: result: yes configure:13883: checking whether to build shared libraries configure:13904: result: no configure:13907: checking whether to build static libraries configure:13911: result: yes configure:13934: checking how to run the C++ preprocessor configure:14000: result: mpiCC -E configure:14020: mpiCC -E conftest.cpp configure:14020: $? = 0 configure:14034: mpiCC -E conftest.cpp conftest.cpp:23:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:14034: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:14203: checking for ld used by mpiCC configure:14270: result: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld configure:14277: checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld configure:14292: result: no configure:14347: checking whether the mpiCC linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries configure:15352: result: yes configure:15388: mpiCC -c -g -O2 conftest.cpp >&5 configure:15391: $? = 0 configure:15911: checking for mpiCC option to produce PIC configure:15918: result: -fno-common -DPIC configure:15926: checking if mpiCC PIC flag -fno-common -DPIC works configure:15944: mpiCC -c -g -O2 -fno-common -DPIC -DPIC conftest.cpp >&5 configure:15948: $? = 0 configure:15961: result: yes configure:15984: checking if mpiCC static flag -static works configure:16012: result: no configure:16024: checking if mpiCC supports -c -o file.o configure:16045: mpiCC -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:16049: $? = 0 configure:16071: result: yes configure:16076: checking if mpiCC supports -c -o file.o configure:16123: result: yes configure:16153: checking whether the mpiCC linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries configure:16192: result: yes configure:16333: checking dynamic linker characteristics configure:17012: result: darwin13.2.0 dyld configure:17065: checking how to hardcode library paths into programs configure:17090: result: immediate configure:22779: checking for known C compilers configure:22800: mpicc -c -g -O2 conftest.c >&5 conftest.c:25:4: error: unknown type name 'choke' choke me ^ conftest.c:25:12: error: expected ';' after top level declarator choke me ^ ; 2 errors generated. configure:22800: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | #ifndef __INTEL_COMPILER | choke me | #endif | int | main () | { | | ; | return 0; | } configure:23172: result: GNU configure:23180: checking for known compiler/OS combinations configure:23254: result: GNU:x86_64 configure:23268: checking for known c++ compilers configure:23289: mpiCC -c -g -O2 conftest.cpp >&5 conftest.cpp:25:4: error: unknown type name 'choke' choke me ^ conftest.cpp:25:12: error: expected ';' after top level declarator choke me ^ ; 2 errors generated. configure:23289: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | #ifndef __INTEL_COMPILER | choke me | #endif | int | main () | { | | ; | return 0; | } configure:23684: result: GNU configure:23692: checking for known compiler/OS combinations configure:23754: result: GNU:x86_64 configure:23941: checking whether make supports nested variables configure:23958: result: yes configure:23971: checking whether byte ordering is bigendian configure:23986: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 configure:23986: $? = 0 configure:24031: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 configure:24031: $? = 0 configure:24049: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 conftest.c:30:4: error: use of undeclared identifier 'not' not big endian ^ 1 error generated. configure:24049: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:24177: result: no configure:24197: checking if platform is IBM BlueGene configure:24214: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 conftest.c:25:4: error: unknown type name 'choke' choke me ^ conftest.c:25:12: error: expected ';' after top level declarator choke me ^ ; 2 errors generated. configure:24214: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | #ifndef __bg__ | choke me | #endif | int | main () | { | | ; | return 0; | } configure:24219: result: no configure:24227: checking for gunzip configure:24243: found /opt/local/bin/gunzip configure:24254: result: gunzip -c configure:24264: checking for gzip configure:24291: result: gunzip -c configure:24301: checking for zcat configure:24328: result: gunzip -c configure:24351: checking if C++ compiler supports template class specialization configure:24375: mpiCC -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.cpp >&5 configure:24375: $? = 0 configure:24388: result: yes configure:24398: checking if C++ compiler supports template function specialization configure:24423: mpiCC -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.cpp >&5 configure:24423: $? = 0 configure:24436: result: yes configure:24454: checking if mpiCC works configure:24467: mpiCC -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.cpp >&5 conftest.cpp:23:16: warning: private field 'i' is not used [-Wunused-private-field] class Cl { int i; public: Cl(int x) : i(x) {} }; Cl x(5); ^ 1 warning generated. configure:24467: $? = 0 configure:24481: mpiCC -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.cpp >&5 conftest.cpp:28:4: error: unknown type name 'choke' choke me ^ 1 error generated. configure:24481: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | int | main () | { | #ifdef __cplusplus | choke me | #endif | ; | return 0; | } configure:24485: result: yes configure:25295: checking for vsnprintf configure:25295: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c -lm >&5 conftest.c:46:6: warning: incompatible redeclaration of library function 'vsnprintf' [-Wincompatible-library-redeclaration] char vsnprintf (); ^ conftest.c:46:6: note: 'vsnprintf' is a builtin with type 'int (char *, unsigned long, const char *, __va_list_tag *)' 1 warning generated. configure:25295: $? = 0 configure:25295: result: yes configure:25307: checking if std::vector has templatized insert method configure:25342: mpiCC -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.cpp >&5 configure:25342: $? = 0 configure:25355: result: yes configure:25363: checking if std::copy must be old SGI format configure:25394: mpiCC -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.cpp >&5 conftest.cpp:35:9: warning: unused variable 'b' [-Wunused-variable] int* a, b = std::count(a, a, 5); ^ conftest.cpp:35:24: warning: variable 'a' is uninitialized when used here [-Wuninitialized] int* a, b = std::count(a, a, 5); ^ conftest.cpp:35:7: note: initialize the variable 'a' to silence this warning int* a, b = std::count(a, a, 5); ^ = NULL 2 warnings generated. configure:25394: $? = 0 configure:25407: result: no configure:25440: checking for inttypes.h configure:25440: result: yes configure:25448: checking for stdint.h configure:25448: result: yes configure:25456: checking for sys/types.h configure:25456: result: yes configure:25464: checking stddef.h usability configure:25464: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 configure:25464: $? = 0 configure:25464: result: yes configure:25464: checking stddef.h presence configure:25464: mpicc -E conftest.c configure:25464: $? = 0 configure:25464: result: yes configure:25464: checking for stddef.h configure:25464: result: yes configure:25472: checking for stdlib.h configure:25472: result: yes configure:25485: checking size of void * configure:25490: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c -lm >&5 configure:25490: $? = 0 configure:25490: ./conftest configure:25490: $? = 0 configure:25504: result: 8 configure:25550: checking for size_t configure:25550: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 configure:25550: $? = 0 configure:25550: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 conftest.c:73:21: error: expected expression if (sizeof ((size_t))) ^ 1 error generated. configure:25550: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:25550: result: yes configure:25596: checking for ptrdiff_t configure:25596: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 configure:25596: $? = 0 configure:25596: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 conftest.c:74:24: error: expected expression if (sizeof ((ptrdiff_t))) ^ 1 error generated. configure:25596: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:25596: result: yes configure:25744: checking size of EntityHandle configure:25746: result: 8 configure:25761: checking if iMesh support is to be built configure:25763: result: yes configure:25779: checking if iGeom support is to be built configure:25781: result: no configure:25845: creating ./config.lt ## ------------------ ## ## Running config.lt. ## ## ------------------ ## config.lt:790: creating libtool configure:27999: checking ieeefp.h usability configure:27999: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.c >&5 conftest.c:69:10: fatal error: 'ieeefp.h' file not found #include ^ 1 error generated. configure:27999: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:27999: result: no configure:27999: checking ieeefp.h presence configure:27999: mpicc -E conftest.c conftest.c:36:10: fatal error: 'ieeefp.h' file not found #include ^ 1 error generated. configure:27999: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | /* end confdefs.h. */ | #include configure:27999: result: no configure:27999: checking for ieeefp.h configure:27999: result: no configure:28020: checking for C++ unordered_map configure:28051: mpiCC -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG conftest.cpp >&5 configure:28051: $? = 0 configure:28112: result: std configure:28136: checking mpi.h usability configure:28136: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 configure:28136: $? = 0 configure:28136: result: yes configure:28136: checking mpi.h presence configure:28136: mpicc -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c configure:28136: $? = 0 configure:28136: result: yes configure:28136: checking for mpi.h configure:28136: result: yes configure:28151: checking If mpi.h conflicts with C headers in C++ configure:28179: mpiCC -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.cpp configure:28179: $? = 0 configure:28180: result: no configure:28572: checking for mpiexec configure:28588: found /usr/local/bin/mpiexec configure:28599: result: mpiexec configure:28838: checking for deflate in -lz configure:28871: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c -lz -lm >&5 configure:28871: $? = 0 configure:28880: result: yes configure:28916: checking for SZ_Decompress in -lsz configure:28949: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c -lsz -lm >&5 ld: library not found for -lsz clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:28949: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_Decompress (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return SZ_Decompress (); | ; | return 0; | } configure:28958: result: no configure:28994: checking if HDF5 support is enabled configure:29010: result: yes configure:29052: checking hdf5.h usability configure:29052: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -I/usr/local/hdf5/include -isystem /usr/local/hdf5/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 configure:29052: $? = 0 configure:29052: result: yes configure:29052: checking hdf5.h presence configure:29052: mpicc -E -I/usr/local/hdf5/include -isystem /usr/local/hdf5/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c configure:29052: $? = 0 configure:29052: result: yes configure:29052: checking for hdf5.h configure:29052: result: yes configure:29072: checking for gpfs_stat in -lgpfs configure:29105: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -I/usr/local/hdf5/include -isystem /usr/local/hdf5/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib conftest.c -lgpfs -lm >&5 ld: library not found for -lgpfs clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:29105: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gpfs_stat (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return gpfs_stat (); | ; | return 0; | } configure:29114: result: no configure:29130: checking for H5Fopen in -lhdf5 configure:29163: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -I/usr/local/hdf5/include -isystem /usr/local/hdf5/include -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib conftest.c -lhdf5 -lm >&5 configure:29163: $? = 0 configure:29173: result: yes configure:29631: checking for H5Pset_fapl_mpio in -lhdf5 configure:29665: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib conftest.c -lhdf5 -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_H5Pset_fapl_mpio", referenced from: _main in conftest-EL8MWT.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:29665: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Pset_fapl_mpio (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return H5Pset_fapl_mpio (); | ; | return 0; | } configure:29674: result: no configure:29679: WARNING: "libhdf5 library does not include parallel support. Parallel HDF5 I/O disabled" configure:29742: checking if CCMIO support is enabled configure:29756: result: yes configure:29764: checking if CCMIO support available configure:29766: result: configure:29798: checking ccmio.h usability configure:29798: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 conftest.c:70:10: fatal error: 'ccmio.h' file not found #include ^ 1 error generated. configure:29798: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:29798: result: no configure:29798: checking ccmio.h presence configure:29798: mpicc -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c conftest.c:37:10: fatal error: 'ccmio.h' file not found #include ^ 1 error generated. configure:29798: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:29798: result: no configure:29798: checking for ccmio.h configure:29798: result: no configure:29812: checking ccmioutility.h usability configure:29812: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 conftest.c:70:10: fatal error: 'ccmioutility.h' file not found #include ^ 1 error generated. configure:29812: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:29812: result: no configure:29812: checking ccmioutility.h presence configure:29812: mpicc -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c conftest.c:37:10: fatal error: 'ccmioutility.h' file not found #include ^ 1 error generated. configure:29812: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:29812: result: no configure:29812: checking for ccmioutility.h configure:29812: result: no configure:29826: checking ccmiocore.h usability configure:29826: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 conftest.c:70:10: fatal error: 'ccmiocore.h' file not found #include ^ 1 error generated. configure:29826: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:29826: result: no configure:29826: checking ccmiocore.h presence configure:29826: mpicc -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c conftest.c:37:10: fatal error: 'ccmiocore.h' file not found #include ^ 1 error generated. configure:29826: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:29826: result: no configure:29826: checking for ccmiocore.h configure:29826: result: no configure:29845: checking unsuccessful, Ccmio support disabled configure:29847: result: configure:29883: checking if DAMSEL support is enabled configure:29900: result: no configure:29905: checking if DAMSEL support available configure:29907: result: configure:30005: checking if NetCDF support is enabled configure:30019: result: yes configure:30051: checking for nc-config configure:30082: result: no configure:30099: WARNING: "NetCDF configuration utility not found" configure:30117: checking netcdf.h usability configure:30117: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 conftest.c:70:10: fatal error: 'netcdf.h' file not found #include ^ 1 error generated. configure:30117: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30117: result: no configure:30117: checking netcdf.h presence configure:30117: mpicc -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c conftest.c:37:10: fatal error: 'netcdf.h' file not found #include ^ 1 error generated. configure:30117: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30117: result: no configure:30117: checking for netcdf.h configure:30117: result: no configure:30191: WARNING: NetCDF header not found. configure:30200: checking for nc_create in -lnetcdf configure:30233: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib conftest.c -lnetcdf -lm >&5 ld: library not found for -lnetcdf clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:30233: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_create (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return nc_create (); | ; | return 0; | } configure:30242: result: no configure:30769: checking for nc_create in -lnetcdf configure:30802: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 ld: library not found for -lnetcdf clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:30802: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_create (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return nc_create (); | ; | return 0; | } configure:30811: result: no configure:30820: checking for nc_create in -lnetcdf configure:30853: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lcurl -lm >&5 ld: library not found for -lnetcdf clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:30853: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_create (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return nc_create (); | ; | return 0; | } configure:30862: result: no configure:30888: WARNING: "NetCDF support disabled" configure:30938: checking if Pnetcdf support is enabled configure:30941: result: yes configure:30985: checking pnetcdf.h usability configure:30985: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 conftest.c:70:10: fatal error: 'pnetcdf.h' file not found #include ^ 1 error generated. configure:30985: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:30985: result: no configure:30985: checking pnetcdf.h presence configure:30985: mpicc -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c conftest.c:37:10: fatal error: 'pnetcdf.h' file not found #include ^ 1 error generated. configure:30985: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:30985: result: no configure:30985: checking for pnetcdf.h configure:30985: result: no configure:31065: checking for ncmpi_create in -lpnetcdf configure:31098: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib conftest.c -lpnetcdf -lm >&5 ld: library not found for -lpnetcdf clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:31098: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char ncmpi_create (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return ncmpi_create (); | ; | return 0; | } configure:31107: result: no configure:31159: checking if CGNS support is enabled configure:31173: result: yes configure:31216: checking cgnslib.h usability configure:31216: mpicc -c -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c >&5 conftest.c:70:10: fatal error: 'cgnslib.h' file not found #include ^ 1 error generated. configure:31216: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:31216: result: no configure:31216: checking cgnslib.h presence configure:31216: mpicc -E -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set conftest.c conftest.c:37:10: fatal error: 'cgnslib.h' file not found #include ^ 1 error generated. configure:31216: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | #include configure:31216: result: no configure:31216: checking for cgnslib.h configure:31216: result: no configure:31220: WARNING: CGNS header not found. configure:31227: checking for cg_open in -lcgns configure:31260: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib conftest.c -lcgns -lm >&5 ld: library not found for -lcgns clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:31260: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cg_open (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return cg_open (); | ; | return 0; | } configure:31269: result: no configure:31796: checking for cg_open in -lcgns configure:31829: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib conftest.c -lcgns -lhdf5_hl -lhdf5 -lm >&5 ld: library not found for -lcgns clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:31829: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cg_open (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return cg_open (); | ; | return 0; | } configure:31838: result: no configure:31847: checking for cg_open in -lcgns configure:31880: mpicc -o conftest -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib conftest.c -lcgns -lhdf5_hl -lhdf5 -lcurl -lm >&5 ld: library not found for -lcgns clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:31880: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MOAB" | #define PACKAGE_TARNAME "moab" | #define PACKAGE_VERSION "4.6.3" | #define PACKAGE_STRING "MOAB 4.6.3" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define PACKAGE "moab" | #define VERSION "4.6.3" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define MOAB_HAVE_INTTYPES_H /**/ | #define MOAB_HAVE_STDINT_H /**/ | #define MOAB_HAVE_SYS_TYPES_H /**/ | #define MOAB_HAVE_STDDEF_H /**/ | #define MOAB_HAVE_STDLIB_H /**/ | #define SIZEOF_VOID_P 8 | #define MOAB_HAVE_SIZE_T /**/ | #define MOAB_HAVE_PTRDIFF_T /**/ | #define MB_VERSION "4.6.3" | #define MB_VERSION_MAJOR 4 | #define MB_VERSION_MINOR 6 | #define MB_VERSION_PATCH 3 | #define MB_VERSION_STRING "MOAB 4.6.3" | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cg_open (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return cg_open (); | ; | return 0; | } configure:31889: result: no configure:31915: WARNING: "CGNS support disabled" configure:32012: checking for doxygen configure:32045: result: no configure:32253: checking if mbconvert is to be built configure:32255: result: yes configure:32280: checking if hexmodops is to be built configure:32282: result: yes configure:32307: checking if qvdual is to be built configure:32309: result: no configure:32334: checking if vtkMOABReader is to be built configure:32336: result: no configure:32361: checking if vtkMOABReaderNew is to be built configure:32363: result: no configure:32388: checking if mbsize is to be built configure:32390: result: yes configure:32415: checking if mbskin is to be built configure:32417: result: yes configure:32442: checking if mbtagprop is to be built configure:32444: result: yes configure:32469: checking if mbmem is to be built configure:32471: result: yes configure:32496: checking if mcnpmit is to be built configure:32498: result: no configure:32523: checking if mbcoupler is to be built configure:32525: result: no configure:32550: checking if spheredecomp is to be built configure:32552: result: yes configure:32577: checking if mbsurfplot is to be built configure:32579: result: yes configure:32604: checking if mbzoltan is to be built configure:32606: result: no configure:32631: checking if dagmc is to be built configure:32633: result: yes configure:32658: checking if gsets is to be built configure:32660: result: yes configure:32685: checking if mbdepth is to be built configure:32687: result: yes configure:32712: checking if refiner is to be built configure:32714: result: no configure:32739: checking if h5mtools is to be built configure:32741: result: yes configure:32766: checking if mbcslam is to be built configure:32768: result: no configure:36617: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by MOAB config.status 4.6.3, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on dyna6-93.cs.uoregon.edu config.status:1453: creating Makefile config.status:1453: creating moab.make config.status:1453: creating MOABConfig.cmake config.status:1453: creating src/Makefile config.status:1453: creating src/io/Makefile config.status:1453: creating src/io/mhdf/Makefile config.status:1453: creating src/LocalDiscretization/Makefile config.status:1453: creating src/parallel/Makefile config.status:1453: creating src/oldinc/Makefile config.status:1453: creating test/Makefile config.status:1453: creating test/dagmc/Makefile config.status:1453: creating test/h5file/Makefile config.status:1453: creating test/dual/Makefile config.status:1453: creating test/obb/Makefile config.status:1453: creating test/perf/Makefile config.status:1453: creating test/perf/point_location/Makefile config.status:1453: creating test/io/Makefile config.status:1453: creating test/parallel/Makefile config.status:1453: creating test/oldinc/Makefile config.status:1453: creating itaps/iBase_f.h config.status:1453: creating itaps/Makefile config.status:1453: creating itaps/imesh/Makefile config.status:1453: creating itaps/imesh/iMesh-Defs.inc config.status:1453: creating itaps/igeom/Makefile config.status:1453: creating itaps/igeom/FBiGeom-Defs.inc config.status:1453: creating tools/Makefile config.status:1453: creating tools/refiner/Makefile config.status:1453: creating tools/mbcoupler/Makefile config.status:1453: creating tools/mbcslam/Makefile config.status:1453: creating tools/mbzoltan/Config.moab config.status:1453: creating tools/mbzoltan/Makefile config.status:1453: creating tools/mcnpmit/Makefile config.status:1453: creating tools/qvdual/Makefile config.status:1453: creating tools/dagmc/Makefile config.status:1453: creating tools/vtkMOABReader/CMakeLists.txt config.status:1453: creating tools/vtkMOABReaderNew/CMakeLists.txt config.status:1453: creating doc/Makefile config.status:1453: creating doc/user.dox config.status:1453: creating doc/config.tex config.status:1453: creating MeshFiles/Makefile config.status:1453: creating MeshFiles/unittest/Makefile config.status:1453: creating MeshFiles/unittest/io/Makefile config.status:1453: creating MeshFiles/unittest/iGeom/Makefile config.status:1453: creating MeshFiles/unittest/dagmc/Makefile config.status:1453: creating config.h config.status:1634: config.h is unchanged config.status:1453: creating src/moab/Version.h config.status:1634: src/moab/Version.h is unchanged config.status:1453: creating src/moab/EntityHandle.hpp config.status:1634: src/moab/EntityHandle.hpp is unchanged config.status:1453: creating src/parallel/moab_mpi_config.h config.status:1634: src/parallel/moab_mpi_config.h is unchanged config.status:1453: creating src/FCDefs.h config.status:1634: src/FCDefs.h is unchanged config.status:1682: executing depfiles commands config.status:1682: executing libtool commands config.status:1682: executing src/MOAB_FCDefs.h commands configure:39649: result: C: mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set configure:39651: result: C++: mpiCC -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set configure:39680: WARNING: ************************************************************************* * MOAB has been configured w/out the NetCDF library. * Support for ExodusII/Genesis and other file formats is disabled! ************************************************************************* configure:39713: WARNING: ************************************************************************* * MOAB has been configured with parallel and HDF5 support * but the configured HDF5 library does not support parallel IO. * Some parallel IO capabilities will be disabled. ************************************************************************* ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-apple-darwin13.2.0 ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPIEXEC_NP_set= ac_cv_env_MPIEXEC_NP_value= ac_cv_env_MPIEXEC_set= ac_cv_env_MPIEXEC_value= ac_cv_env_NP_set= ac_cv_env_NP_value= ac_cv_env_QTDIR_set= ac_cv_env_QTDIR_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_vsnprintf=yes ac_cv_header_ccmio_h=no ac_cv_header_ccmiocore_h=no ac_cv_header_ccmioutility_h=no ac_cv_header_cgnslib_h=no ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_ieeefp_h=no ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_mpi_h=yes ac_cv_header_netcdf_h=no ac_cv_header_pnetcdf_h=no ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-apple-darwin13.2.0 ac_cv_lib_cgns_cg_open=no ac_cv_lib_gpfs_gpfs_stat=no ac_cv_lib_hdf5_H5Pset_fapl_mpio=no ac_cv_lib_hdf5___H5Fopen=yes ac_cv_lib_netcdf_nc_create=no ac_cv_lib_pnetcdf_ncmpi_create=no ac_cv_lib_sz_SZ_Decompress=no ac_cv_lib_z_deflate=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_NC_CONFIG=no ac_cv_path_SED=sed ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_CC=mpicc ac_cv_prog_CPP='mpicc -E' ac_cv_prog_CXX=mpiCC ac_cv_prog_CXXCPP='mpiCC -E' ac_cv_prog_MPIEXEC=mpiexec ac_cv_prog_SED=sed ac_cv_prog_ZCAT='gunzip -c' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_DSYMUTIL=dsymutil ac_cv_prog_ac_ct_LIPO=lipo ac_cv_prog_ac_ct_NMEDIT=nmedit ac_cv_prog_ac_ct_OTOOL=otool ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_sizeof_void_p=8 ac_cv_target=x86_64-apple-darwin13.2.0 ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes fathom_cv_std_count_old_sgi=no fathom_cv_std_vector_templatized_insert=yes lt_cv_apple_cc_single_mod=yes lt_cv_ar_at_file=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_exported_symbols_list=yes lt_cv_ld_force_load=yes lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld lt_cv_path_LDCXX=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld lt_cv_path_NM=/opt/local/bin/nm lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fno-common -DPIC' lt_cv_prog_compiler_pic_CXX='-fno-common -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=196608 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop mk_cv_cxx_unordered_map=std snl_cv_template_func_specialization=yes snl_cv_template_specialization=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /Users/lab/Documents/Code/moab-4.6.3/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CFLAGS='' AM_CPPFLAGS=' -I/usr/local/hdf5/include -isystem /usr/local/hdf5/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE' AM_CXXFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_FCFLAGS='' AM_FFLAGS='' AM_LDFLAGS=' -L/usr/local/hdf5/lib' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /Users/lab/Documents/Code/moab-4.6.3/config/missing --run autoconf' AUTOHEADER='${SHELL} /Users/lab/Documents/Code/moab-4.6.3/config/missing --run autoheader' AUTOMAKE='${SHELL} /Users/lab/Documents/Code/moab-4.6.3/config/missing --run automake-1.11' AWK='awk' CC='mpicc' CCDEPMODE='depmode=gcc3' CCMIO_FILE_FALSE='' CCMIO_FILE_TRUE='#' CCMIO_LIBS='' CFLAGS=' -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG' CGM_CPPFLAGS='' CGM_DIR='' CGM_LDFLAGS='' CGM_LIBS='' CGM_LTFLAGS='' CGNS_FILE_FALSE='' CGNS_FILE_TRUE='#' CGNS_LIBS='' CPP='mpicc -E' CPPFLAGS=' -DUNORDERED_MAP_NS=std -DHAVE_UNORDERED_MAP=unordered_map -DHAVE_UNORDERED_SET=unordered_set' CXX='mpiCC' CXXCPP='mpiCC -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG' CYGPATH_W='echo' DAMSEL_FILE_FALSE='' DAMSEL_FILE_TRUE='#' DAMSEL_LIBS='' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DISTCHECK_CONFIGURE_FLAGS=' --with-mpi="yes" --with-hdf5="/usr/local/hdf5"' DLLTOOL='false' DOXYGEN='no' DSYMUTIL='dsymutil' DUMPBIN='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_DOCS_FALSE='' ENABLE_DOCS_TRUE='#' ENABLE_FORTRAN_FALSE='' ENABLE_FORTRAN_TRUE='#' ENABLE_dagmc_FALSE='#' ENABLE_dagmc_TRUE='' ENABLE_gsets_FALSE='#' ENABLE_gsets_TRUE='' ENABLE_h5mtools_FALSE='#' ENABLE_h5mtools_TRUE='' ENABLE_hexmodops_FALSE='#' ENABLE_hexmodops_TRUE='' ENABLE_igeom_FALSE='' ENABLE_igeom_TRUE='#' ENABLE_imesh_FALSE='#' ENABLE_imesh_TRUE='' ENABLE_mbconvert_FALSE='#' ENABLE_mbconvert_TRUE='' ENABLE_mbcoupler_FALSE='' ENABLE_mbcoupler_TRUE='#' ENABLE_mbcslam_FALSE='' ENABLE_mbcslam_TRUE='#' ENABLE_mbdepth_FALSE='#' ENABLE_mbdepth_TRUE='' ENABLE_mbmem_FALSE='#' ENABLE_mbmem_TRUE='' ENABLE_mbsize_FALSE='#' ENABLE_mbsize_TRUE='' ENABLE_mbskin_FALSE='#' ENABLE_mbskin_TRUE='' ENABLE_mbsurfplot_FALSE='#' ENABLE_mbsurfplot_TRUE='' ENABLE_mbtagprop_FALSE='#' ENABLE_mbtagprop_TRUE='' ENABLE_mbzoltan_FALSE='' ENABLE_mbzoltan_TRUE='#' ENABLE_mcnpmit_FALSE='' ENABLE_mcnpmit_TRUE='#' ENABLE_qvdual_FALSE='' ENABLE_qvdual_TRUE='#' ENABLE_refiner_FALSE='' ENABLE_refiner_TRUE='#' ENABLE_spheredecomp_FALSE='#' ENABLE_spheredecomp_TRUE='' ENABLE_vtkMOABReaderNew_FALSE='' ENABLE_vtkMOABReaderNew_TRUE='#' ENABLE_vtkMOABReader_FALSE='' ENABLE_vtkMOABReader_TRUE='#' EXEEXT='' EXPORT_LDFLAGS=' -L/usr/local/hdf5/lib' EXPORT_LTFLAGS='' F77='' FC='' FCFLAGS=' -O2' FCLIBS='' FFLAGS=' -O2' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' HAVE_CGM_FALSE='' HAVE_CGM_TRUE='#' HAVE_ZCAT_FALSE='' HAVE_ZCAT_TRUE='#' HDF5_FILE_FALSE='#' HDF5_FILE_TRUE='' HDF5_LIBS='-lhdf5 ' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld' LDFLAGS=' -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib -L/usr/local/hdf5/lib' LIBOBJS='' LIBS=' -lm' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='lipo' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /Users/lab/Documents/Code/moab-4.6.3/config/missing --run makeinfo' MANIFEST_TOOL=':' MKDIR_P='config/install-sh -c -d' MOAB_CGM_DEFINES='' MOAB_CXX_LIBS='' MOAB_CXX_LINKFLAGS='' MOC='' MPE_LIBS='' MPIEXEC='mpiexec' MPIEXEC_NP='-np' NC_CONFIG='no' NETCDF_CPPFLAGS='' NETCDF_FILE_FALSE='' NETCDF_FILE_TRUE='#' NETCDF_LDFLAGS='' NETCDF_LIBS='' NETCDF_VERSION='' NM='/opt/local/bin/nm' NMEDIT='nmedit' NP='2' OBJDUMP='false' OBJEXT='o' OLD_HEADERS_FALSE='#' OLD_HEADERS_TRUE='' OTOOL64=':' OTOOL='otool' PACKAGE='moab' PACKAGE_BUGREPORT='' PACKAGE_NAME='MOAB' PACKAGE_STRING='MOAB 4.6.3' PACKAGE_TARNAME='moab' PACKAGE_URL='' PACKAGE_VERSION='4.6.3' PARALLEL_FALSE='#' PARALLEL_HDF5_FALSE='' PARALLEL_HDF5_TRUE='#' PARALLEL_TRUE='' PATH_SEPARATOR=':' PNETCDF_FILE_FALSE='' PNETCDF_FILE_TRUE='#' PNETCDF_LIBS='' QTDIR='' QVDUAL_INCLUDES='' QVDUAL_LIBS='' RANLIB='ranlib' SED='sed' SET_MAKE='' SHELL='/bin/sh' SIZEOF_VOID_P='8' STRIP='strip' UIC='' USE_MPIEXEC_FALSE='#' USE_MPIEXEC_TRUE='' USE_MPI_FALSE='#' USE_MPI_TRUE='' VERSION='4.6.3' VTK_INCLUDES='' VTK_INC_DIR='' VTK_LIBS='' VTK_LIB_DIR='' WITH_MPE='no' XMKMF='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' ZCAT='gunzip -c' ZOLTAN_INC_FLAGS='' ZOLTAN_LIBS='' ZOLTAN_LIB_FLAGS='' ac_ct_AR='ar' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-apple-darwin13.2.0' build_alias='' build_cpu='x86_64' build_os='darwin13.2.0' build_vendor='apple' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-apple-darwin13.2.0' host_alias='' host_cpu='x86_64' host_os='darwin13.2.0' host_vendor='apple' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/lab/Documents/Code/moab-4.6.3/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(top_builddir)/config/install-sh -c -d' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Users/lab/Documents/Code/moab-4.6.3' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-apple-darwin13.2.0' target_alias='' target_cpu='x86_64' target_os='darwin13.2.0' target_vendor='apple' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "MOAB" #define PACKAGE_TARNAME "moab" #define PACKAGE_VERSION "4.6.3" #define PACKAGE_STRING "MOAB 4.6.3" #define PACKAGE_BUGREPORT "" #define PACKAGE_URL "" #define PACKAGE "moab" #define VERSION "4.6.3" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define MOAB_HAVE_INTTYPES_H /**/ #define MOAB_HAVE_STDINT_H /**/ #define MOAB_HAVE_SYS_TYPES_H /**/ #define MOAB_HAVE_STDDEF_H /**/ #define MOAB_HAVE_STDLIB_H /**/ #define SIZEOF_VOID_P 8 #define MOAB_HAVE_SIZE_T /**/ #define MOAB_HAVE_PTRDIFF_T /**/ #define MB_VERSION "4.6.3" #define MB_VERSION_MAJOR 4 #define MB_VERSION_MINOR 6 #define MB_VERSION_PATCH 3 #define MB_VERSION_STRING "MOAB 4.6.3" #define HAVE_HDF5_H 1 configure: exit 0