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<body class='hmmessage'><div dir='ltr'><br>Hi Vegendla,<div><br></div><div>Thank you for your help, I installed hdf5 but when I try installing moab I get some errors</div><div><br></div><div>here is the output of running <span style="color: rgb(31, 73, 125); font-size: 15px;">./configure --with-mpi --with-hdf5=/home/user/install/hdf5 --prefix=/home/user/install/moab/bld</span></div><div><br></div><div>
<p class="p1">checking how to get verbose linking output from mpif90... configure: WARNING: compilation failed</p>
<p class="p2"><br></p>
<p class="p1">checking for Fortran libraries of mpif90... </p>
<p class="p1">checking for dummy main to link with Fortran libraries... none</p>
<p class="p1">checking for Fortran name-mangling scheme... configure: error: in `/Users/robabinyahib/Documents/Code/moab-4.6.3':</p>
<p class="p1">configure: error: cannot compile a simple Fortran program</p>
<p class="p1">See `config.log' for more details</p><p class="p1"><br></p><p class="p1">any thoughts of what is going wrong? </p><p class="p1"><br></p><p class="p1">thank you.</p><div><hr id="stopSpelling">From: svegendla@anl.gov<br>To: the.1.lily@hotmail.com; moab-dev@mcs.anl.gov<br>Subject: RE: [MOAB-dev] make check returns error when installing moab<br>Date: Mon, 21 Jul 2014 13:53:13 +0000<br><br>
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<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">Lily,</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;"> </span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">You have to install HDF5. The following steps may help you.
</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;"> </span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">#hdf5 install procedure##</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> mkdir /home/user/install/hdf5</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> cd hdf5</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> tar xzf ~/hdf5-1.8.12.tar.gz</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> ln -s hdf5-1.8.12 src</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> cd bld</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> CC=/software/mvapich2-intel-psm-1.9.5/bin/mpicc ../src/configure --enable-shared --prefix=/home/user/install/hdf5</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> make</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">> make install</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;"> </span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;"> </span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;"> </span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">#MOAB##</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">>git clone https://bitbucket.org/fathomteam/moab</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">>cd moab</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">>autoreconf -fi</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">>./configure --with-mpi --with-hdf5=/home/user/install/hdf5 --prefix=/home/user/install/moab/bld</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">>make
</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">>make install</span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;"> </span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;"> </span></p>
<p class="ecxMsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D;">Prasad</span></p>
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<p class="ecxMsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";"> moab-dev-bounces@mcs.anl.gov [mailto:moab-dev-bounces@mcs.anl.gov]
<b>On Behalf Of </b>the lily<br>
<b>Sent:</b> Monday, July 21, 2014 3:07 AM<br>
<b>To:</b> moab-dev@mcs.anl.gov<br>
<b>Subject:</b> [MOAB-dev] make check returns error when installing moab</span></p>
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<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Hi everyone,</span></p>
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<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> </span></p>
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<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">I keep getting an error when I try to install moab, here are the steps I did and the output for each step,</span></p>
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<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> </span></p>
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<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Step1: ./configure</span></p>
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<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">output: </span></p>
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<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">configure: WARNING:</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">*************************************************************************</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">* MOAB has been configured w/out the HDF5 library.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">* Support for native file format is disabled!</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">*************************************************************************</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">configure: WARNING:</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">*************************************************************************</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">* MOAB has been configured w/out the NetCDF library.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">* Support for ExodusII/Genesis and other file formats is disabled!</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">*************************************************************************</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> </span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Step2: make</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">output:</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[3]: Nothing to be done for `all-am'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in io</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[3]: Nothing to be done for `all'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in dual</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[3]: Nothing to be done for `all'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in obb</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[3]: Nothing to be done for `all'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in perf</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in point_location</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[4]: Nothing to be done for `all'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[4]: Nothing to be done for `all-am'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in dagmc</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[3]: Nothing to be done for `all'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in oldinc</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[3]: Nothing to be done for `all'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Making all in doc</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[2]: Nothing to be done for `all'.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">./config.status --version | \</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> tr "'" "\n" | \</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> sed -e '/^ *$/d' > moab.config</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> </span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">Step3: make check</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">output:</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">libtool: link: unrecognized option `-O2'</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">libtool: link: Try `libtool --help' for more information.</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[4]: *** [ScdMeshF90] Error 1</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[3]: *** [check-am] Error 2</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[2]: *** [check] Error 2</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make[1]: *** [check-recursive] Error 1</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">make: *** [check-recursive] Error 1</span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> </span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";"> </span></p>
<p class="ecxMsoNormal"><span style="font-family:"Calibri","sans-serif";">I do not know what exactly went wrong, do I need to install any libraries before installing moab?<br>
<br>
Thank you.</span></p>
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