<html><body><div style="color:#000; background-color:#fff; font-family:lucida console, sans-serif;font-size:10pt"><div><span>Just to complete the thread: we've resolved the issue.</span></div><div style="color: rgb(0, 0, 0); font-size: 13.3333px; font-family: lucida console,sans-serif; background-color: transparent; font-style: normal;"><span>MOAB was built using mpi option, but serial hdf5 was used, using parallel hdf5 fixes the problems while running Nek5000 in parallel.</span></div><div style="color: rgb(0, 0, 0); font-size: 13.3333px; font-family: lucida console,sans-serif; background-color: transparent; font-style: normal;"><br><span></span></div><div style="color: rgb(0, 0, 0); font-size: 13.3333px; font-family: lucida console,sans-serif; background-color: transparent; font-style: normal;"><span>Rajeev<br></span></div><div><br></div> <div style="font-family: lucida console, sans-serif; font-size: 10pt;"> <div style="font-family: HelveticaNeue,
Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 12pt;"> <div dir="ltr"> <hr size="1"> <font face="Arial" size="2"> <b><span style="font-weight:bold;">From:</span></b> "Jain, Rajeev" <jain@mcs.anl.gov><br> <b><span style="font-weight: bold;">To:</span></b> "Grindeanu, Iulian R." <iulian@mcs.anl.gov>; "Vegendla, Surya Narayana Prasad" <svegendla@anl.gov> <br><b><span style="font-weight: bold;">Cc:</span></b> MOAB Dev <moab-dev@mcs.anl.gov> <br> <b><span style="font-weight: bold;">Sent:</span></b> Wednesday, July 16, 2014 10:01 AM<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: [MOAB-dev] how to install mbpart in moab installation??<br> </font> </div> <div class="y_msg_container"><br><div id="yiv4021343890"><div>
<div style="color:#000;background-color:#fff;font-family:lucida console, sans-serif;font-size:10pt;">
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="">The mesh files are already partitioned for the Nek examples you're trying to run.
<br clear="none">
</span></div>
<div class="yiv4021343890" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:lucida console, sans-serif;background-color:transparent;font-style:normal;">
<span class="yiv4021343890" style="">Let's try to see if it fails loading on multiple processors:</span></div>
<div class="yiv4021343890" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:lucida console, sans-serif;background-color:transparent;font-style:normal;">
<span class="yiv4021343890" style="">/homes/jain/nek5_svn/examples/moab
<br class="yiv4021343890" style="" clear="none">
==> mpiexec -n 2 mbconvert -O PARALLEL=READ_PART -O PARTITION=PARALLEL_PARTITION -O PARALLEL_RESOLVE_SHARED_ENTS -O PARTITION_DISTRIBUTE -o PARALLEL=WRITE_PART pipe00.h5m t.h5m</span></div>
<div class="yiv4021343890" style=""><br clear="none">
<span class="yiv4021343890" style=""></span></div>
<div class="yiv4021343890" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:lucida console, sans-serif;background-color:transparent;font-style:normal;">
If this fails then your moab installation has problems.<br clear="none">
<span class="yiv4021343890" style=""></span></div>
<div class="yiv4021343890" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:lucida console, sans-serif;background-color:transparent;font-style:normal;">
<span class="yiv4021343890" style=""><br class="yiv4021343890" style="" clear="none">
</span></div>
<div class="yiv4021343890" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:lucida console, sans-serif;background-color:transparent;font-style:normal;">
<span class="yiv4021343890" style="">Rajeev<br class="yiv4021343890" style="" clear="none">
</span></div>
<div class="yiv4021343890" style=""><br class="yiv4021343890" style="" clear="none">
</div>
<div class="qtdSeparateBR"><br><br></div><div class="yiv4021343890yqt0179483095" id="yiv4021343890yqt66028"><div class="yiv4021343890" style="font-family:lucida console, sans-serif;font-size:10pt;">
<div class="yiv4021343890" style="font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:12pt;">
<div class="yiv4021343890" dir="ltr" style="">
<hr class="yiv4021343890" style="" size="1">
<font class="yiv4021343890" style="" face="Arial" size="2"><b class="yiv4021343890" style=""><span class="yiv4021343890" style="font-weight:bold;">From:</span></b> "Grindeanu, Iulian R." <iulian@mcs.anl.gov><br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style=""><span class="yiv4021343890" style="font-weight:bold;">To:</span></b> "Vegendla, Surya Narayana Prasad" <svegendla@anl.gov>; "Jain, Rajeev" <jain@mcs.anl.gov>
<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style=""><span class="yiv4021343890" style="font-weight:bold;">Cc:</span></b> MOAB Dev <moab-dev@mcs.anl.gov>
<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style=""><span class="yiv4021343890" style="font-weight:bold;">Sent:</span></b> Wednesday, July 16, 2014 9:11 AM<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style=""><span class="yiv4021343890" style="font-weight:bold;">Subject:</span></b> RE: how to install mbpart in moab installation??<br class="yiv4021343890" style="" clear="none">
</font></div>
<div class="yiv4021343890" style=""><br class="yiv4021343890" style="" clear="none">
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<div class="yiv4021343890" style="direction:ltr;font-family:Tahoma;color:#000000;font-size:10pt;">
you need zoltan, too<br class="yiv4021343890" style="" clear="none">
<a rel="nofollow" shape="rect" class="yiv4021343890" style="" target="_blank" href="http://sigma.mcs.anl.gov/?p=409">http://sigma.mcs.anl.gov/?p=409</a><br class="yiv4021343890" style="" clear="none">
<br class="yiv4021343890" style="" clear="none">
when you configure with zoltan, mbpart will be compiled, too<br class="yiv4021343890" style="" clear="none">
<br class="yiv4021343890" style="" clear="none">
<div class="yiv4021343890" style="font-family:Times New Roman;color:#000000;font-size:16px;">
<hr class="yiv4021343890" style="" tabindex="-1">
<div class="yiv4021343890" id="yiv4021343890divRpF202522" style="direction:ltr;"><font class="yiv4021343890" style="" color="#000000" face="Tahoma" size="2"><b class="yiv4021343890" style="">From:</b> moab-dev-bounces@mcs.anl.gov [moab-dev-bounces@mcs.anl.gov] on behalf of Vegendla, Surya Narayana
Prasad [svegendla@anl.gov]<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Sent:</b> Wednesday, July 16, 2014 8:59 AM<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">To:</b> Jain, Rajeev<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Cc:</b> MOAB Dev<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Subject:</b> Re: [MOAB-dev] how to install mbpart in moab installation??<br class="yiv4021343890" style="" clear="none">
</font><br class="yiv4021343890" style="" clear="none">
</div>
<div class="yiv4021343890" style=""></div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">Yes Rajeev, I configured with mpi. Did I miss anything in the following commands?</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;"> </span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">#MOAB##</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">git clone https://bitbucket.org/fathomteam/moab</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">cd moab</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">autoreconf -fi</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">./configure --with-mpi --with-hdf5=/home/svegendla/install/hdf5 --prefix=/home/svegendla/install/moab/bld</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">make
</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">make install</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;"> </span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;"> </span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">Thanks,</span></div>
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:11.0pt;color:#1F497D;">Prasad</span></div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in;">
<div class="yiv4021343890" style=""><b class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:10.0pt;">From:</span></b><span class="yiv4021343890" style="font-size:10.0pt;"> Rajeev Jain [mailto:jain@mcs.anl.gov]
<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Sent:</b> Tuesday, July 15, 2014 8:51 PM<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">To:</b> Vegendla, Surya Narayana Prasad<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Cc:</b> MOAB Dev<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Subject:</b> Re: how to install mbpart in moab installation??</span></div>
</div>
</div>
<div class="yiv4021343890" style=""> </div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;">MOAB must be configured with MBZoltan for mbpart tool. </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;">The .h5m file in Nek repo already has two partitions and it should work well with two processors.</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;">The error line you mention is a call to "iMeshP_loadAll" function are you using parallel MOAB?</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;">==> mbsize -t moab_conjht.h5m </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;">File moab_conjht.h5m:</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> Tag Name Vertex Hex EntitySet</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;">------------------ -------- -------- ---------</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> MATERIAL_SET 0 0 3</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> NEUMANN_SET 0 0 6</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> DIRICHLET_SET 0 0 0</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> GEOM_DIMENSION 0 0 0</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> GLOBAL_ID 99 5 11</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> HAS_MID_NODES 0 0 3</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;">PARALLEL_PARTITION 0 0 2</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> distFactor 0 0 6</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> qaRecord 0 0 0</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:10.0pt;color:black;">Rajeev</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="text-align:center;background:white;" align="center"><span class="yiv4021343890" style="color:black;">
</span><hr class="yiv4021343890" style="" align="center" size="1" width="100%">
</div>
<div class="yiv4021343890" style="background:white;"><b class="yiv4021343890" style=""><span class="yiv4021343890" style="font-size:10.0pt;color:black;">From:</span></b><span class="yiv4021343890" style="font-size:10.0pt;color:black;"> "Vegendla, Surya Narayana Prasad" <<a rel="nofollow" shape="rect" class="yiv4021343890" style="" ymailto="mailto:svegendla@anl.gov" target="_blank" href="mailto:svegendla@anl.gov">svegendla@anl.gov</a>><br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">To:</b> "Jain, Rajeev" <<a rel="nofollow" shape="rect" class="yiv4021343890" style="" ymailto="mailto:jain@mcs.anl.gov" target="_blank" href="mailto:jain@mcs.anl.gov">jain@mcs.anl.gov</a>>
<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Sent:</b> Tuesday, July 15, 2014 3:56 PM<br class="yiv4021343890" style="" clear="none">
<b class="yiv4021343890" style="">Subject:</b> how to install mbpart in moab installation??</span><span class="yiv4021343890" style="color:black;"></span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
<div class="yiv4021343890" id="yiv4021343890" style="">
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">Hi Rajeev,</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">How to install mbpart in MOAB bin directory as similar to mbconvert?</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">And also following errors are seen while running on multi processors blues account, here I used the partition grid from MCS account where mbpart installed your directory (it works well
in a single processor).</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">Number of processors: 2</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">REAL wdsize : 8</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">INTEGER wdsize : 4</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> Beginning session:</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> /home/svegendla/nekFiles/moab_conjhtOld/moab_conjht.rea</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">timer accuracy: 9.5367432E-08 sec</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">read .rea file</span></div>
</div>
<div class="yiv4021343890" style="">
<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">ASSERT ERROR: 21 in moab.f line 477</span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">ASSERT ERROR: 21 in moab.f line 477</span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">call exitt: dying ...</span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;"> </span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">Thanks,</span></div>
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<div class="yiv4021343890" style="background:white;"><span class="yiv4021343890" style="color:black;">Prasad</span></div>
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